Literature DB >> 31626532

Catalytic M Center of Copper Monooxygenases Probed by Rational Design. Effects of Selenomethionine and Histidine Substitution on Structure and Reactivity.

Katherine B Alwan1, Evan F Welch1, Ninian J Blackburn1.   

Abstract

The M centers of the mononuclear monooxygenases peptidylglycine monooxygenase (PHM) and dopamine β-monooxygenase bind and activate dioxygen en route to substrate hydroxylation. Recently, we reported the rational design of a protein-based model in which the CusF metallochaperone was repurposed via a His to Met mutation to act as a structural and spectroscopic biomimic. The PHM M site exhibits a number of unusual attributes, including a His2Met ligand set, a fluxional Cu(I)-S(Met) bond, tight binding of exogenous ligands CO and N3-, and complete coupling of oxygen reduction to substrate hydroxylation even at extremely low turnover rates. In particular, mutation of the Met ligand to His completely eliminates the catalytic activity despite the propensity of CuI-His3 centers to bind and activate dioxygen in other metalloenzyme systems. Here, we further develop the CusF-based model to explore methionine variants in which Met is replaced by selenomethionine (SeM) and histidine. We examine the effects on coordinate structure and exogenous ligand binding via X-ray absorption spectroscopy and electron paramagnetic resonance and probe the consequences of mutations on redox chemistry via studies of the reduction by ascorbate and oxidation via molecular oxygen. The M-site model is three-coordinate in the Cu(I) state and binds CO to form a four-coordinate carbonyl. In the oxidized forms, the coordination changes to tetragonal five-coordinate with a long axial Met ligand that like the enzymes is undetectable at either the Cu or Se K edges. The EXAFS data at the Se K edge of the SeM variant provide unique information about the nature of the Cu-methionine bond that is likewise weak and fluxional. Kinetic studies document the sluggish reactivity of the Cu(I) complexes with molecular oxygen and rapid rates of reduction of the Cu(II) complexes by ascorbate, indicating a remarkable stability of the Cu(I) state in all three derivatives. The results show little difference between the Met ligand and its SeM and His congeners and suggest that the Met contributes to catalysis in ways that are more complex than simple perturbation of the redox chemistry. Overall, the results stimulate a critical re-examination of the canonical reaction mechanisms of the mononuclear copper monooxygenases.

Entities:  

Year:  2019        PMID: 31626532      PMCID: PMC6905645          DOI: 10.1021/acs.biochem.9b00823

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  71 in total

Review 1.  The copper-enzyme family of dopamine beta-monooxygenase and peptidylglycine alpha-hydroxylating monooxygenase: resolving the chemical pathway for substrate hydroxylation.

Authors:  Judith P Klinman
Journal:  J Biol Chem       Date:  2005-11-21       Impact factor: 5.157

2.  Substrate-mediated electron transfer in peptidylglycine alpha-hydroxylating monooxygenase.

Authors:  S T Prigge; A S Kolhekar; B A Eipper; R E Mains; L M Amzel
Journal:  Nat Struct Biol       Date:  1999-10

Review 3.  The catalytic cycle of nitrous oxide reductase - The enzyme that catalyzes the last step of denitrification.

Authors:  Cíntia Carreira; Sofia R Pauleta; Isabel Moura
Journal:  J Inorg Biochem       Date:  2017-09-11       Impact factor: 4.155

4.  Selenomethionine-substituted Thermus thermophilus cytochrome ba3: characterization of the CuA site by Se and Cu K-EXAFS.

Authors:  N J Blackburn; M Ralle; E Gomez; M G Hill; A Pastuszyn; D Sanders; J A Fee
Journal:  Biochemistry       Date:  1999-06-01       Impact factor: 3.162

5.  Binuclear Cu(A) Formation in Biosynthetic Models of Cu(A) in Azurin Proceeds via a Novel Cu(Cys)2His Mononuclear Copper Intermediate.

Authors:  Saumen Chakraborty; Michael J Polen; Kelly N Chacón; Tiffany D Wilson; Yang Yu; Julian Reed; Mark J Nilges; Ninian J Blackburn; Yi Lu
Journal:  Biochemistry       Date:  2015-10-06       Impact factor: 3.162

Review 6.  Copper-Oxygen Complexes Revisited: Structures, Spectroscopy, and Reactivity.

Authors:  Courtney E Elwell; Nicole L Gagnon; Benjamin D Neisen; Debanjan Dhar; Andrew D Spaeth; Gereon M Yee; William B Tolman
Journal:  Chem Rev       Date:  2017-01-19       Impact factor: 60.622

7.  A copper-methionine interaction controls the pH-dependent activation of peptidylglycine monooxygenase.

Authors:  Andrew T Bauman; Brenda A Broers; Chelsey D Kline; Ninian J Blackburn
Journal:  Biochemistry       Date:  2011-11-22       Impact factor: 3.162

8.  Dioxygen binds end-on to mononuclear copper in a precatalytic enzyme complex.

Authors:  Sean T Prigge; Betty A Eipper; Richard E Mains; L Mario Amzel
Journal:  Science       Date:  2004-05-07       Impact factor: 47.728

9.  O2 activation by binuclear Cu sites: noncoupled versus exchange coupled reaction mechanisms.

Authors:  Peng Chen; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-30       Impact factor: 11.205

10.  Three-dimensional structure of the human copper transporter hCTR1.

Authors:  Christopher J De Feo; Stephen G Aller; Gnana S Siluvai; Ninian J Blackburn; Vinzenz M Unger
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-24       Impact factor: 11.205

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  2 in total

1.  Copper monooxygenase reactivity: Do consensus mechanisms accurately reflect experimental observations?

Authors:  Evan F Welch; Katherine W Rush; Renee J Arias; Ninian J Blackburn
Journal:  J Inorg Biochem       Date:  2022-02-28       Impact factor: 4.336

2.  Pre-Steady-State Reactivity of Peptidylglycine Monooxygenase Implicates Ascorbate in Substrate Triggering of the Active Conformer.

Authors:  Evan F Welch; Katherine W Rush; Renee J Arias; Ninian J Blackburn
Journal:  Biochemistry       Date:  2022-04-05       Impact factor: 3.321

  2 in total

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