Literature DB >> 22941607

Replication-coupled DNA interstrand cross-link repair in Xenopus egg extracts.

Puck Knipscheer1, Markus Räschle, Orlando D Schärer, Johannes C Walter.   

Abstract

Interstrand cross-links (ICL) are one of the most hazardous types of DNA damage as they form a roadblock to all processes that involve strand separation. Repair of these lesions involves several different DNA repair pathways, but the molecular mechanism is unclear. Here we describe a system that allows the examination of ICL repair, via a physiological mechanism, in vitro. This system, which uses Xenopus egg extracts in combination with a DNA template that contains a site-specific ICL, represents a unique tool to study the molecular mechanism of ICL repair.

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Year:  2012        PMID： 22941607      PMCID： PMC4100613          DOI： 10.1007/978-1-61779-998-3_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  8 in total

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Authors:  Y M Akkari; R L Bateman; C A Reifsteck; S B Olson; M Grompe
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

2.  Mechanism of replication-coupled DNA interstrand crosslink repair.

Authors:  Markus Räschle; Puck Knipscheer; Puck Knipsheer; Milica Enoiu; Todor Angelov; Jingchuan Sun; Jack D Griffith; Tom E Ellenberger; Orlando D Schärer; Johannes C Walter
Journal:  Cell       Date:  2008-09-19       Impact factor: 41.582

3.  DNA replication in nucleus-free Xenopus egg extracts.

Authors:  Ronald Lebofsky; Tatsuro Takahashi; Johannes C Walter
Journal:  Methods Mol Biol       Date:  2009

4.  Regulated chromosomal DNA replication in the absence of a nucleus.

Authors:  J Walter; L Sun; J Newport
Journal:  Mol Cell       Date:  1998-03       Impact factor: 17.970

Review 5.  Repair of DNA interstrand cross-links during S phase of the mammalian cell cycle.

Authors:  Randy J Legerski
Journal:  Environ Mol Mutagen       Date:  2010-07       Impact factor: 3.216

6.  Fanconi anemia proteins are required to prevent accumulation of replication-associated DNA double-strand breaks.

Authors:  Alexandra Sobeck; Stacie Stone; Vincenzo Costanzo; Bendert de Graaf; Tanja Reuter; Johan de Winter; Michael Wallisch; Yassmine Akkari; Susan Olson; Weidong Wang; Hans Joenje; Jan L Christian; Patrick J Lupardus; Karlene A Cimprich; Jean Gautier; Maureen E Hoatlin
Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

7.  DNA is a co-factor for its own replication in Xenopus egg extracts.

Authors:  Ronald Lebofsky; Antoine M van Oijen; Johannes C Walter
Journal:  Nucleic Acids Res       Date:  2010-09-21       Impact factor: 16.971

8.  The Fanconi anemia pathway promotes replication-dependent DNA interstrand cross-link repair.

Authors:  Puck Knipscheer; Markus Räschle; Agata Smogorzewska; Milica Enoiu; The Vinh Ho; Orlando D Schärer; Stephen J Elledge; Johannes C Walter
Journal:  Science       Date:  2009-11-12       Impact factor: 47.728
  8 in total
  17 in total

1.  Covalent DNA-Protein Cross-Linking by Phosphoramide Mustard and Nornitrogen Mustard in Human Cells.

Authors:  Arnold Groehler; Peter W Villalta; Colin Campbell; Natalia Tretyakova
Journal:  Chem Res Toxicol       Date:  2016-01-20       Impact factor: 3.739

2.  14-3-3 proteins restrain the Exo1 nuclease to prevent overresection.

Authors:  Xiaoqing Chen; In-Kwon Kim; Yuchi Honaker; Sharad C Paudyal; Won Kyun Koh; Melanie Sparks; Shan Li; Helen Piwnica-Worms; Tom Ellenberger; Zhongsheng You
Journal:  J Biol Chem       Date:  2015-04-01       Impact factor: 5.157

3.  Regulation of the Rev1-pol ζ complex during bypass of a DNA interstrand cross-link.

Authors:  Magda Budzowska; Thomas G W Graham; Alexandra Sobeck; Shou Waga; Johannes C Walter
Journal:  EMBO J       Date:  2015-06-12       Impact factor: 11.598

4.  Preparation of Stable Nitrogen Mustard DNA Interstrand Cross-Link Analogs for Biochemical and Cell Biological Studies.

Authors:  Alejandra Castaño; Upasana Roy; Orlando D Schärer
Journal:  Methods Enzymol       Date:  2017-04-14       Impact factor: 1.600

5.  XPF-ERCC1 acts in Unhooking DNA interstrand crosslinks in cooperation with FANCD2 and FANCP/SLX4.

Authors:  Daisy Klein Douwel; Rick A C M Boonen; David T Long; Anna A Szypowska; Markus Räschle; Johannes C Walter; Puck Knipscheer
Journal:  Mol Cell       Date:  2014-04-10       Impact factor: 17.970

6.  Translesion synthesis of the major nitrogen mustard-induced DNA lesion by human DNA polymerase η.

Authors:  Hunmin Jung; Naveen Kumar Rayala; Seongmin Lee
Journal:  Biochem J       Date:  2020-12-11       Impact factor: 3.857

Review 7.  Imaging cellular responses to antigen tagged DNA damage.

Authors:  Marina A Bellani; Jing Huang; Manikandan Paramasivam; Durga Pokharel; Julia Gichimu; Jing Zhang; Michael M Seidman
Journal:  DNA Repair (Amst)       Date:  2018-08-23

8.  Crystal structure of a Fanconi anemia-associated nuclease homolog bound to 5' flap DNA: basis of interstrand cross-link repair by FAN1.

Authors:  Gwang Hyeon Gwon; Youngran Kim; Yaqi Liu; Adam T Watson; Aera Jo; Thomas J Etheridge; Fenghua Yuan; Yanbin Zhang; YoungChang Kim; Anthony M Carr; Yunje Cho
Journal:  Genes Dev       Date:  2014-10-15       Impact factor: 11.361

9.  DNA interstrand cross-link repair requires replication-fork convergence.

Authors:  Jieqiong Zhang; James M Dewar; Magda Budzowska; Anna Motnenko; Martin A Cohn; Johannes C Walter
Journal:  Nat Struct Mol Biol       Date:  2015-02-02       Impact factor: 15.369

10.  Single Molecule Analysis of Laser Localized Interstrand Crosslinks.

Authors:  Jing Huang; Himabindu Gali; Manikandan Paramasivam; Parameswary Muniandy; Julia Gichimu; Marina A Bellani; Michael M Seidman
Journal:  Front Genet       Date:  2016-05-09       Impact factor: 4.599
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