Literature DB >> 19563110

DNA replication in nucleus-free Xenopus egg extracts.

Ronald Lebofsky1, Tatsuro Takahashi, Johannes C Walter.   

Abstract

Extracts derived from Xenopus laevis eggs represent a powerful cell-free system to study eukaryotic DNA replication. A variation of the system allows for DNA replication not only in a cell-free environment, but also in the absence of a nucleus. In this nucleus-free system, DNA templates are licensed with High-Speed Supernatant (HSS) and then replicated with a concentrated NucleoPlasmic Extract (NPE). This method has the advantage of allowing replication of small plasmids with desired modifications and manipulation of the nuclear environment. This chapter describes the protocols needed to prepare HSS and NPE and how these extracts are used to study DNA replication.

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Year:  2009        PMID: 19563110     DOI: 10.1007/978-1-60327-815-7_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  54 in total

1.  Direct role for proliferating cell nuclear antigen in substrate recognition by the E3 ubiquitin ligase CRL4Cdt2.

Authors:  Courtney G Havens; Nadia Shobnam; Estrella Guarino; Richard C Centore; Lee Zou; Stephen E Kearsey; Johannes C Walter
Journal:  J Biol Chem       Date:  2012-02-02       Impact factor: 5.157

2.  ATR phosphorylates SMARCAL1 to prevent replication fork collapse.

Authors:  Frank B Couch; Carol E Bansbach; Robert Driscoll; Jessica W Luzwick; Gloria G Glick; Rémy Bétous; Clinton M Carroll; Sung Yun Jung; Jun Qin; Karlene A Cimprich; David Cortez
Journal:  Genes Dev       Date:  2013-07-15       Impact factor: 11.361

3.  DNA Damage Response in Xenopus laevis Cell-Free Extracts.

Authors:  Tomas Aparicio Casado; Jean Gautier
Journal:  Methods Mol Biol       Date:  2021

Review 4.  Cell-free Xenopus egg extracts for studying DNA damage response pathways.

Authors:  Steven Cupello; Christine Richardson; Shan Yan
Journal:  Int J Dev Biol       Date:  2016       Impact factor: 2.203

5.  Cohesin acetylation and Wapl-Pds5 oppositely regulate translocation of cohesin along DNA.

Authors:  Mai Kanke; Eri Tahara; Pim J Huis In't Veld; Tomoko Nishiyama
Journal:  EMBO J       Date:  2016-11-21       Impact factor: 11.598

6.  Protein phosphatase 2A and Cdc7 kinase regulate the DNA unwinding element-binding protein in replication initiation.

Authors:  Yanzhe Gao; Jianhong Yao; Sumeet Poudel; Eric Romer; Lubna Abu-Niaaj; Michael Leffak
Journal:  J Biol Chem       Date:  2014-09-25       Impact factor: 5.157

7.  BRCA1 promotes unloading of the CMG helicase from a stalled DNA replication fork.

Authors:  David T Long; Vladimir Joukov; Magda Budzowska; Johannes C Walter
Journal:  Mol Cell       Date:  2014-09-11       Impact factor: 17.970

8.  Chromatin Immunoprecipitation (ChIP) of Plasmid-Bound Proteins in Xenopus Egg Extracts.

Authors:  Kelly B Wolfe; David T Long
Journal:  Methods Mol Biol       Date:  2019

9.  Replication-Dependent Unhooking of DNA Interstrand Cross-Links by the NEIL3 Glycosylase.

Authors:  Daniel R Semlow; Jieqiong Zhang; Magda Budzowska; Alexander C Drohat; Johannes C Walter
Journal:  Cell       Date:  2016-09-29       Impact factor: 41.582

10.  A role for the MRN complex in ATR activation via TOPBP1 recruitment.

Authors:  Anja M Duursma; Robert Driscoll; Josh E Elias; Karlene A Cimprich
Journal:  Mol Cell       Date:  2013-04-11       Impact factor: 17.970

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