Literature DB >> 22941364

Coupling endonucleases with DNA end-processing enzymes to drive gene disruption.

Michael T Certo1, Kamila S Gwiazda, Ryan Kuhar, Blythe Sather, Gabrielle Curinga, Tyler Mandt, Michelle Brault, Abigail R Lambert, Sarah K Baxter, Kyle Jacoby, Byoung Y Ryu, Hans-Peter Kiem, Agnes Gouble, Frederic Paques, David J Rawlings, Andrew M Scharenberg.   

Abstract

Targeted DNA double-strand breaks introduced by rare-cleaving designer endonucleases can be harnessed for gene disruption applications by engaging mutagenic nonhomologous end-joining DNA repair pathways. However, endonuclease-mediated DNA breaks are often subject to precise repair, which limits the efficiency of targeted genome editing. To address this issue, we coupled designer endonucleases to DNA end-processing enzymes to drive mutagenic break resolution, achieving up to 25-fold enhancements in gene disruption rates.

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Year:  2012        PMID: 22941364      PMCID: PMC3602999          DOI: 10.1038/nmeth.2177

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  15 in total

Review 1.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

Review 2.  MMEJ repair of double-strand breaks (director's cut): deleted sequences and alternative endings.

Authors:  Mitch McVey; Sang Eun Lee
Journal:  Trends Genet       Date:  2008-09-21       Impact factor: 11.639

Review 3.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.

Authors:  Michael R Lieber
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 4.  Chemokine receptor 5 knockout strategies.

Authors:  Paula Cannon; Carl June
Journal:  Curr Opin HIV AIDS       Date:  2011-01       Impact factor: 4.283

Review 5.  Regulation of DNA double-strand break repair pathway choice.

Authors:  Meena Shrivastav; Leyma P De Haro; Jac A Nickoloff
Journal:  Cell Res       Date:  2008-01       Impact factor: 25.617

6.  Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays.

Authors:  Morgan L Maeder; Stacey Thibodeau-Beganny; Jeffry D Sander; Daniel F Voytas; J Keith Joung
Journal:  Nat Protoc       Date:  2009-09-17       Impact factor: 13.491

7.  Tracking genome engineering outcome at individual DNA breakpoints.

Authors:  Michael T Certo; Byoung Y Ryu; James E Annis; Mikhail Garibov; Jordan Jarjour; David J Rawlings; Andrew M Scharenberg
Journal:  Nat Methods       Date:  2011-07-10       Impact factor: 28.547

8.  Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection.

Authors:  Vikram Pattanayak; Cherie L Ramirez; J Keith Joung; David R Liu
Journal:  Nat Methods       Date:  2011-08-07       Impact factor: 28.547

9.  A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences.

Authors:  Julianne Smith; Sylvestre Grizot; Sylvain Arnould; Aymeric Duclert; Jean-Charles Epinat; Patrick Chames; Jesús Prieto; Pilar Redondo; Francisco J Blanco; Jerónimo Bravo; Guillermo Montoya; Frédéric Pâques; Philippe Duchateau
Journal:  Nucleic Acids Res       Date:  2006-11-27       Impact factor: 16.971

10.  Limiting the persistence of a chromosome break diminishes its mutagenic potential.

Authors:  Nicole Bennardo; Amanda Gunn; Anita Cheng; Paul Hasty; Jeremy M Stark
Journal:  PLoS Genet       Date:  2009-10-16       Impact factor: 5.917

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  49 in total

Review 1.  Salient Features of Endonuclease Platforms for Therapeutic Genome Editing.

Authors:  Michael T Certo; Richard A Morgan
Journal:  Mol Ther       Date:  2016-01-22       Impact factor: 11.454

Review 2.  Progress and prospects of engineered sequence-specific DNA modulating technologies for the management of liver diseases.

Authors:  Samantha A Nicholson; Buhle Moyo; Patrick B Arbuthnot
Journal:  World J Hepatol       Date:  2015-04-28

3.  Predicting the mutations generated by repair of Cas9-induced double-strand breaks.

Authors:  Felicity Allen; Luca Crepaldi; Clara Alsinet; Alexander J Strong; Vitalii Kleshchevnikov; Pietro De Angeli; Petra Páleníková; Anton Khodak; Vladimir Kiselev; Michael Kosicki; Andrew R Bassett; Heather Harding; Yaron Galanty; Francisco Muñoz-Martínez; Emmanouil Metzakopian; Stephen P Jackson; Leopold Parts
Journal:  Nat Biotechnol       Date:  2018-11-27       Impact factor: 54.908

4.  Redesign of extensive protein-DNA interfaces of meganucleases using iterative cycles of in vitro compartmentalization.

Authors:  Ryo Takeuchi; Michael Choi; Barry L Stoddard
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-03       Impact factor: 11.205

Review 5.  A guide to genome engineering with programmable nucleases.

Authors:  Hyongbum Kim; Jin-Soo Kim
Journal:  Nat Rev Genet       Date:  2014-04-02       Impact factor: 53.242

6.  Biasing genome-editing events toward precise length deletions with an RNA-guided TevCas9 dual nuclease.

Authors:  Jason M Wolfs; Thomas A Hamilton; Jeremy T Lant; Marcon Laforet; Jenny Zhang; Louisa M Salemi; Gregory B Gloor; Caroline Schild-Poulter; David R Edgell
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-12       Impact factor: 11.205

7.  Disruption or Excision of Provirus as an Approach to HIV Cure.

Authors:  Keith R Jerome
Journal:  AIDS Patient Care STDS       Date:  2016-11-17       Impact factor: 5.078

8.  Tuning DNA binding affinity and cleavage specificity of an engineered gene-targeting nuclease via surface display, flow cytometry and cellular analyses.

Authors:  Nixon Niyonzima; Abigail R Lambert; Rachel Werther; Harshana De Silva Feelixge; Pavitra Roychoudhury; Alexander L Greninger; Daniel Stone; Barry L Stoddard; Keith R Jerome
Journal:  Protein Eng Des Sel       Date:  2017-07-01       Impact factor: 1.650

Review 9.  Targeted gene disruption to cure HIV.

Authors:  Daniel Stone; Hans-Peter Kiem; Keith R Jerome
Journal:  Curr Opin HIV AIDS       Date:  2013-05       Impact factor: 4.283

10.  Not All SCID Pigs Are Created Equally: Two Independent Mutations in the Artemis Gene Cause SCID in Pigs.

Authors:  Emily H Waide; Jack C M Dekkers; Jason W Ross; Raymond R R Rowland; Carol R Wyatt; Catherine L Ewen; Alyssa B Evans; Dinesh M Thekkoot; Nicholas J Boddicker; Nick V L Serão; N Matthew Ellinwood; Christopher K Tuggle
Journal:  J Immunol       Date:  2015-08-28       Impact factor: 5.422

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