Literature DB >> 22933756

Insights from the genome sequence of a Salmonella enterica serovar Typhi strain associated with a sporadic case of typhoid fever in Malaysia.

Kien-Pong Yap1, Cindy Shuan Ju Teh, Ramani Baddam, Lay-Ching Chai, Narender Kumar, Tiruvayipati Suma Avasthi, Niyaz Ahmed, Kwai-Lin Thong.   

Abstract

Salmonella enterica serovar Typhi is the causative agent of typhoid fever, which causes nearly 21.7 million illnesses and 217,000 deaths globally. Herein, we describe the whole-genome sequence of the Salmonella Typhi strain ST0208, isolated from a sporadic case of typhoid fever in Kuala Lumpur, Malaysia. The whole-genome sequence and comparative genomics allow an in-depth understanding of the genetic diversity, and its link to pathogenicity and evolutionary dynamics, of this highly clonal pathogen that is endemic to Malaysia.

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Year:  2012        PMID: 22933756      PMCID: PMC3430317          DOI: 10.1128/JB.01062-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  25 in total

Review 1.  The mar regulon: multiple resistance to antibiotics and other toxic chemicals.

Authors:  M N Alekshun; S B Levy
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2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

Review 3.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  DNA sequence analysis of DNA gyrase and DNA topoisomerase IV quinolone resistance-determining regions of Salmonella enterica serovar Typhi and serovar Paratyphi A.

Authors:  Kenji Hirose; Ai Hashimoto; Kazumichi Tamura; Yoshiaki Kawamura; Takayuki Ezaki; Hiroko Sagara; Haruo Watanabe
Journal:  Antimicrob Agents Chemother       Date:  2002-10       Impact factor: 5.191

6.  Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18.

Authors:  Wen Deng; Shian-Ren Liou; Guy Plunkett; George F Mayhew; Debra J Rose; Valerie Burland; Voula Kodoyianni; David C Schwartz; Frederick R Blattner
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

7.  Clonal expansion and microevolution of quinolone-resistant Salmonella enterica serotype typhi in Vietnam from 1996 to 2004.

Authors:  Thi Anh Hong Le; Laëtitia Fabre; Philippe Roumagnac; Patrick A D Grimont; Maurice R Scavizzi; François-Xavier Weill
Journal:  J Clin Microbiol       Date:  2007-08-29       Impact factor: 5.948

8.  Genome size variation among recent human isolates of Salmonella typhi.

Authors:  K L Thong; S D Puthucheary; T Pang
Journal:  Res Microbiol       Date:  1997 Mar-Apr       Impact factor: 3.992

9.  Analysis of Salmonella typhi isolates from Southeast Asia by pulsed-field gel electrophoresis.

Authors:  K L Thong; S Puthucheary; R M Yassin; P Sudarmono; M Padmidewi; E Soewandojo; I Handojo; S Sarasombath; T Pang
Journal:  J Clin Microbiol       Date:  1995-07       Impact factor: 5.948

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

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  5 in total

Review 1.  Utilization of multiple "omics" studies in microbial pathogeny for microbiology insights.

Authors:  Viroj Wiwanitkit
Journal:  Asian Pac J Trop Biomed       Date:  2013-04

2.  Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, Malaysia.

Authors:  Ramani Baddam; Narender Kumar; Sabiha Shaik; Tiruvayipati Suma; Soo Tein Ngoi; Kwai-Lin Thong; Niyaz Ahmed
Journal:  Gut Pathog       Date:  2012-12-13       Impact factor: 4.181

3.  Genome dynamics and evolution of Salmonella Typhi strains from the typhoid-endemic zones.

Authors:  Ramani Baddam; Narender Kumar; Sabiha Shaik; Aditya Kumar Lankapalli; Niyaz Ahmed
Journal:  Sci Rep       Date:  2014-12-12       Impact factor: 4.379

4.  Comparative genomics of closely related Salmonella enterica serovar Typhi strains reveals genome dynamics and the acquisition of novel pathogenic elements.

Authors:  Kien-Pong Yap; Han Ming Gan; Cindy Shuan Ju Teh; Lay Ching Chai; Kwai Lin Thong
Journal:  BMC Genomics       Date:  2014-11-20       Impact factor: 3.969

5.  Global MLST of Salmonella Typhi Revisited in Post-genomic Era: Genetic Conservation, Population Structure, and Comparative Genomics of Rare Sequence Types.

Authors:  Kien-Pong Yap; Wing S Ho; Han M Gan; Lay C Chai; Kwai L Thong
Journal:  Front Microbiol       Date:  2016-03-02       Impact factor: 5.640

  5 in total

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