Literature DB >> 12644504

Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18.

Wen Deng1, Shian-Ren Liou, Guy Plunkett, George F Mayhew, Debra J Rose, Valerie Burland, Voula Kodoyianni, David C Schwartz, Frederick R Blattner.   

Abstract

We present the 4.8-Mb complete genome sequence of Salmonella enterica serovar Typhi strain Ty2, a human-specific pathogen causing typhoid fever. A comparison with the genome sequence of recently isolated S. enterica serovar Typhi strain CT18 showed that 29 of the 4,646 predicted genes in Ty2 are unique to this strain, while 84 genes are unique to CT18. Both genomes contain more than 200 pseudogenes; 9 of these genes in CT18 are intact in Ty2, while 11 intact CT18 genes are pseudogenes in Ty2. A half-genome interreplichore inversion in Ty2 relative to CT18 was confirmed. The two strains exhibit differences in prophages, insertion sequences, and island structures. While CT18 carries two plasmids, one conferring multiple drug resistance, Ty2 has no plasmids and is sensitive to antibiotics.

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Year:  2003        PMID： 12644504      PMCID： PMC151493          DOI： 10.1128/JB.185.7.2330-2337.2003

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  35 in total

1.  The molecular mechanisms of severe typhoid fever.

Authors:  P Everest; J Wain; M Roberts; G Rook; G Dougan
Journal:  Trends Microbiol       Date:  2001-07       Impact factor: 17.079

2.  Involvement of SipA in modulating actin dynamics during Salmonella invasion into cultured epithelial cells.

Authors:  Wendy Higashide; Shipan Dai; Veronica P Hombs; Daoguo Zhou
Journal:  Cell Microbiol       Date:  2002-06       Impact factor: 3.715

3.  Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.

Authors:  N T Perna; G Plunkett; V Burland; B Mau; J D Glasner; D J Rose; G F Mayhew; P S Evans; J Gregor; H A Kirkpatrick; G Pósfai; J Hackett; S Klink; A Boutin; Y Shao; L Miller; E J Grotbeck; N W Davis; A Lim; E T Dimalanta; K D Potamousis; J Apodaca; T S Anantharaman; J Lin; G Yen; D C Schwartz; R A Welch; F R Blattner
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

4.  The alternative sigma factor sigmaE controls antioxidant defences required for Salmonella virulence and stationary-phase survival.

Authors:  Traci L Testerman; Andrés Vazquez-Torres; Yisheng Xu; Jessica Jones-Carson; Stephen J Libby; Ferric C Fang
Journal:  Mol Microbiol       Date:  2002-02       Impact factor: 3.501

5.  Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.

Authors:  M McClelland; K E Sanderson; J Spieth; S W Clifton; P Latreille; L Courtney; S Porwollik; J Ali; M Dante; F Du; S Hou; D Layman; S Leonard; C Nguyen; K Scott; A Holmes; N Grewal; E Mulvaney; E Ryan; H Sun; L Florea; W Miller; T Stoneking; M Nhan; R Waterston; R K Wilson
Journal:  Nature       Date:  2001-10-25       Impact factor: 49.962

6.  Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18.

Authors:  J Parkhill; G Dougan; K D James; N R Thomson; D Pickard; J Wain; C Churcher; K L Mungall; S D Bentley; M T Holden; M Sebaihia; S Baker; D Basham; K Brooks; T Chillingworth; P Connerton; A Cronin; P Davis; R M Davies; L Dowd; N White; J Farrar; T Feltwell; N Hamlin; A Haque; T T Hien; S Holroyd; K Jagels; A Krogh; T S Larsen; S Leather; S Moule; P O'Gaora; C Parry; M Quail; K Rutherford; M Simmonds; J Skelton; K Stevens; S Whitehead; B G Barrell
Journal:  Nature       Date:  2001-10-25       Impact factor: 49.962

Review 7.  Unlocking the genome of the human typhoid bacillus.

Authors:  John Wain; Deborah House; Julian Parkhill; Christopher Parry; Gordon Dougan
Journal:  Lancet Infect Dis       Date:  2002-03       Impact factor: 25.071

8.  Genome sequence of Yersinia pestis, the causative agent of plague.

Authors:  J Parkhill; B W Wren; N R Thomson; R W Titball; M T Holden; M B Prentice; M Sebaihia; K D James; C Churcher; K L Mungall; S Baker; D Basham; S D Bentley; K Brooks; A M Cerdeño-Tárraga; T Chillingworth; A Cronin; R M Davies; P Davis; G Dougan; T Feltwell; N Hamlin; S Holroyd; K Jagels; A V Karlyshev; S Leather; S Moule; P C Oyston; M Quail; K Rutherford; M Simmonds; J Skelton; K Stevens; S Whitehead; B G Barrell
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

9.  Evolution of multi-gene segments in the mutS-rpoS intergenic region of Salmonella enterica serovar Typhimurium LT2.

Authors:  Michael L Kotewicz; Baoguang Li; Dan D Levy; J Eugene LeClerc; Andrew W Shifflet; Thomas A Cebula
Journal:  Microbiology       Date:  2002-08       Impact factor: 2.777

10.  Genome sequence of Yersinia pestis KIM.

Authors:  Wen Deng; Valerie Burland; Guy Plunkett; Adam Boutin; George F Mayhew; Paul Liss; Nicole T Perna; Debra J Rose; Bob Mau; Shiguo Zhou; David C Schwartz; Jaqueline D Fetherston; Luther E Lindler; Robert R Brubaker; Gregory V Plano; Susan C Straley; Kathleen A McDonough; Matthew L Nilles; Jyl S Matson; Frederick R Blattner; Robert D Perry
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490
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  159 in total

1.  Prophage contribution to bacterial population dynamics.

Authors:  Lionello Bossi; Juan A Fuentes; Guido Mora; Nara Figueroa-Bossi
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

2.  EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae.

Authors:  Liliana Florea; Michael McClelland; Cathy Riemer; Scott Schwartz; Webb Miller
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Integration and distribution of Lactobacillus johnsonii prophages.

Authors:  Marco Ventura; Carlos Canchaya; David Pridmore; Bernard Berger; Harald Brüssow
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

4.  Mauve: multiple alignment of conserved genomic sequence with rearrangements.

Authors:  Aaron C E Darling; Bob Mau; Frederick R Blattner; Nicole T Perna
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

Review 5.  Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion.

Authors:  Harald Brüssow; Carlos Canchaya; Wolf-Dietrich Hardt
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

6.  A DNA region recognized by the nitric oxide-responsive transcriptional activator NorR is conserved in beta- and gamma-proteobacteria.

Authors:  Andrea Büsch; Anne Pohlmann; Bärbel Friedrich; Rainer Cramm
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

7.  Complete genome sequence of Salmonella enterica subsp. enterica serovar Typhi P-stx-12.

Authors:  Su Yean Ong; Chandra Bhan Pratap; Xuehua Wan; Shaobin Hou; Ahmad Yamin Abdul Rahman; Jennifer A Saito; Gopal Nath; Maqsudul Alam
Journal:  J Bacteriol       Date:  2012-04       Impact factor: 3.490

8.  coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

Authors:  Roy R Chaudhuri; Arshad M Khan; Mark J Pallen
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

9.  Hot spot for a large deletion in the 18- to 19-centisome region confers a multiple phenotype in Salmonella enterica serovar Typhimurium strain ATCC 14028.

Authors:  Sean R Murray; Karim Suwwan de Felipe; Pamela L Obuchowski; Jeremy Pike; David Bermudes; K Brooks Low
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

10.  Characterization of the genome composition of Bartonella koehlerae by microarray comparative genomic hybridization profiling.

Authors:  Hillevi L Lindroos; Alex Mira; Dirk Repsilber; Olga Vinnere; Kristina Näslund; Michaela Dehio; Christoph Dehio; Siv G E Andersson
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490
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