Literature DB >> 22929552

Chemoselective modification of viral surfaces via bioorthogonal click chemistry.

Frederick A Rubino1, Yoon Hyeun Oum, Lakshmi Rajaram, Yanjie Chu, Isaac S Carrico.   

Abstract

The modification of virus particles has received a significant amount of attention for its tremendous potential for impacting gene therapy, oncolytic applications and vaccine development. Current approaches to modifying viral surfaces, which are mostly genetics-based, often suffer from attenuation of virus production, infectivity and cellular transduction. Using chemoselective click chemistry, we have developed a straightforward alternative approach which sidesteps these issues while remaining both highly flexible and accessible. The goal of this protocol is to demonstrate the effectiveness of using bioorthogonal click chemistry to modify the surface of adenovirus type 5 particles. This two-step process can be used both therapeutically or analytically, as it allows for chemoselective ligation of targeting molecules, dyes or other molecules of interest onto proteins pre-labeled with azide tags. The three major advantages of this method are that (1) metabolic labeling demonstrates little to no impact on viral fitness, (2) a wide array of effector ligands can be utilized, and (3) it is remarkably fast, reliable and easy to access. In the first step of this procedure, adenovirus particles are produced bearing either azidohomoalanine (Aha, a methionine surrogate) or the unnatural sugar O-linked N-azidoacetylglucosamine (O-GlcNAz), both of which contain the azide (-N3) functional group. After purification of the azide-modified virus particles, an alkyne probe containing the fluorescent TAMRA moiety is ligated in a chemoselective manner to the pre-labeled proteins or glycoproteins. Finally, an SDS-PAGE analysis is performed to demonstrate the successful ligation of the probe onto the viral capsid proteins. Aha incorporation is shown to label all viral capsid proteins (Hexon, Penton and Fiber), while O-GlcNAz incorporation results in labeling of Fiber only. In this evolving field, multiple methods for azide-alkyne ligation have been successfully developed; however only the two we have found to be most convenient are demonstrated herein - strain-promoted azide-alkyne cycloaddition (SPAAC) and copper-catalyzed azide-alkyne cycloaddition (CuAAC) under deoxygenated atmosphere.

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Year:  2012        PMID: 22929552      PMCID: PMC3487292          DOI: 10.3791/4246

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  12 in total

1.  Genetic retargeting of adenovirus vectors: functionality of targeting ligands and their influence on virus viability.

Authors:  Maria K Magnusson; Saw See Hong; Petra Henning; Pierre Boulanger; Leif Lindholm
Journal:  J Gene Med       Date:  2002 Jul-Aug       Impact factor: 4.565

2.  Tandem fluorescence imaging of dynamic S-acylation and protein turnover.

Authors:  Mingzi M Zhang; Lun K Tsou; Guillaume Charron; Anuradha S Raghavan; Howard C Hang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

3.  Unnatural amino acid incorporation onto adenoviral (Ad) coat proteins facilitates chemoselective modification and retargeting of Ad type 5 vectors.

Authors:  Partha Sarathi Banerjee; Philomena Ostapchuk; Patrick Hearing; Isaac Sheridan Carrico
Journal:  J Virol       Date:  2011-05-25       Impact factor: 5.103

4.  Chemoselective attachment of small molecule effector functionality to human adenoviruses facilitates gene delivery to cancer cells.

Authors:  Partha Sarathi Banerjee; Philomena Ostapchuk; Patrick Hearing; Isaac Carrico
Journal:  J Am Chem Soc       Date:  2010-10-06       Impact factor: 15.419

5.  Adenovirus type 5 fiber knob domain has a critical role in fiber protein synthesis and encapsidation.

Authors:  Petra Henning; Emma Lundgren; Mattias Carlsson; Karolin Frykholm; Jenny Johannisson; Maria K Magnusson; Erika Tång; Laure Franqueville; Saw See Hong; Leif Lindholm; Pierre Boulanger
Journal:  J Gen Virol       Date:  2006-11       Impact factor: 3.891

6.  Analysis and optimization of copper-catalyzed azide-alkyne cycloaddition for bioconjugation.

Authors:  Vu Hong; Stanislav I Presolski; Celia Ma; M G Finn
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

7.  Preparation of the functionalizable methionine surrogate azidohomoalanine via copper-catalyzed diazo transfer.

Authors:  A James Link; Mandy K S Vink; David A Tirrell
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

8.  A strain-promoted [3 + 2] azide-alkyne cycloaddition for covalent modification of biomolecules in living systems.

Authors:  Nicholas J Agard; Jennifer A Prescher; Carolyn R Bertozzi
Journal:  J Am Chem Soc       Date:  2004-11-24       Impact factor: 15.419

9.  Readily accessible bicyclononynes for bioorthogonal labeling and three-dimensional imaging of living cells.

Authors:  Jan Dommerholt; Samuel Schmidt; Rinske Temming; Linda J A Hendriks; Floris P J T Rutjes; Jan C M van Hest; Dirk J Lefeber; Peter Friedl; Floris L van Delft
Journal:  Angew Chem Int Ed Engl       Date:  2010-12-03       Impact factor: 15.336

Review 10.  Engineering targeted viral vectors for gene therapy.

Authors:  Reinhard Waehler; Stephen J Russell; David T Curiel
Journal:  Nat Rev Genet       Date:  2007-07-03       Impact factor: 53.242

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  5 in total

Review 1.  Exterior design: strategies for redecorating the bacterial surface with small molecules.

Authors:  Samir Gautam; Thomas J Gniadek; Taehan Kim; David A Spiegel
Journal:  Trends Biotechnol       Date:  2013-03-13       Impact factor: 19.536

Review 2.  Retargeting adenoviruses for therapeutic applications and vaccines.

Authors:  Michael A Barry; Jeffrey D Rubin; Shao-Chia Lu
Journal:  FEBS Lett       Date:  2020-02-03       Impact factor: 4.124

Review 3.  LncRNAs at the heart of development and disease.

Authors:  Kelly M Anderson; Douglas M Anderson
Journal:  Mamm Genome       Date:  2022-01-20       Impact factor: 2.957

4.  ALDH1A3-regulated long non-coding RNA NRAD1 is a potential novel target for triple-negative breast tumors and cancer stem cells.

Authors:  Dejan Vidovic; Thomas T Huynh; Prathyusha Konda; Cheryl Dean; Brianne M Cruickshank; Mohammad Sultan; Krysta M Coyle; Shashi Gujar; Paola Marcato
Journal:  Cell Death Differ       Date:  2019-06-13       Impact factor: 12.067

Review 5.  Recent trends in click chemistry as a promising technology for virus-related research.

Authors:  Ting Ouyang; Xiaohui Liu; Hongsheng Ouyang; Linzhu Ren
Journal:  Virus Res       Date:  2018-08-03       Impact factor: 3.303

  5 in total

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