| Literature DB >> 22929118 |
Simone Schmidt1, Frank Stahl, Kai-Oliver Mutz, Thomas Scheper, Andreas Hahn, Jan P Schuchardt.
Abstract
BACKGROUND: Epidemiological studies have suggested the benefits of omega-3 polyunsaturated fatty acids (n-3 PUFAs) on cardiovascular health, but only limited data are available describing n-3 PUFA regulated pathways in humans. The aim of this study was to investigate the effects of n-3 PUFA administration on whole genome expression profiles in the blood of normo- and dyslipidemic subjects.Entities:
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Year: 2012 PMID: 22929118 PMCID: PMC3484010 DOI: 10.1186/1476-511X-11-105
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Figure 1Flow chart of subject recruitment and sample selection for microarray analysis.
Anthropometric data, serum lipid levels and red blood cell membrane fatty acid composition of the four treatment groups (FO-N, CO-N, FO-D, CO-D) at baseline (t) and after supplementation with fish oil or corn oil over twelve weeks (t)
| Age [years] | 37.50 ± 8.11 | | 37.40 ± 8.30 | | 41.80 ± 8.94 | | 40.20 ± 8.64 | |
| Body height [cm] | 180.30 ± 6.29 | | 181.60 ± 7.54 | | 182.80 ± 7.02 | | 180.40 ± 7.55 | |
| Body weight [kg] | 78.90 ± 15.25 | 78.51 ± 16.13 | 85.80 ± 10.90 | 84.79 ± 11.19 | 85.50 ± 14.80 | 84.53 ± 14.51 | 94.80 ± 13.20 | 94.06 ± 13.80 |
| Body mass index [kg/m2] | 24.20 ± 4.15 | 24.13 ± 4.50 | 25.90 ± 2.83 | 25.67 ± 2.78 | 25.40 ± 2.91 | 25.14 ± 2.86 | 29.00 ± 2.98 | 28.82 ± 3.25 |
| TC [mg/dl] | 184.10 ± 13.30 | 195.60 ± 26.10 | 194.00 ± 22.20 | 188.90 ± 21.50 | 261.00 ± 48.10 | 257.50 ± 60.30 | 262.20 ± 61.90 | 264.40 ± 49.20 |
| TG [mg/dl] | 82.40 ± 35.30 | 66.20 ± 16.70 | 155.60 ± 53.80 | 87.40 ± 14.80 | 175.00 ± 56.20 | 186.90 ± 49.60 | 322.40 ± 258.9 | 230.80 ± 147.0 |
| HDL [mg/dl] | 59.00 ± 10.40 c | 65.20 ± 14.40 | 52.70 ± 12.70 | 52.60 ± 11.60 | 47.90 ± 10.02 | 47.40 ± 8.21 | 45.20 ± 6.50 | 50.80 ± 9.43 |
| LDL [mg/dl] | 108.70 ± 12.80 | 117.20 ± 22.10 | 118.10 ± 25.10 | 118.60 ± 28.20 | 178.10 ± 45.40 | 172.60 ± 54.40 | 146.10 ± 5.31 | 167.40 ± 23.60 |
| LDL/HDL quotient | 1.89 ± 0.40 | 1.88 ± 0.54 | 2.41 ± 0.89 d | 2.41 ± 0.98 | 3.74 ± 0.68 | 3.60 ± 0.73 | 3.20 ± 0.58 | 3.24 ± 0.73 |
| LA (18:2n-6) [%] | 0.25 ± 0.03 | 0.19 ± 0.03 | 0.23 ± 0.03 | 0.20 ± 0.05 | 0.22 ± 0.03 | 0.18 ± 0.05 | 0.23 ± 0.03 | 0.17 ± 0.03 |
| AA (20:4n-6) [%] | 15.95 ± 0.81 | 13.00 ± 0.65 | 15.74 ± 1.48 | 15.99 ± 1.74 | 14.94 ± 1.47 | 14.88 ± 1.22 | 12.82 ± 2.19 | 11.98 ± 1.61 |
| EPA (22:5n-3) [%] | 2.31 ± 0.41 | 3.74 ± 0.51 | 2.31 ± 0.22 | 2.44 ± 0.18 | 2.09 ± 0.41 | 2.39 ± 0.35 | 2.00 ± 0.43 | 3.31 ± 0.26 |
| DHA (22:6n-3) [%] | 4.39 ± 0.68 | 6.87 ± 0.78 | 4.16 ± 1.14 | 4.09 ± 0.94 | 4.28 ± 1.27 | 4.57 ± 1.10 | 3.90 ± 1.42 | 6.59 ± 0.75 |
| Omega-3-index [%] | 5.24 ± 0.70 | 10.70 ± 1.06 | 5.08 ± 1.41 | 4.78 ± 1.16 | 5.27 ± 1.69 | 5.50 ± 1.57 | 4.90 ± 1.80 | 9.84 ± 1.26 |
* percentage of total fatty acids.
§ P<0.05 (Changes between baseline and month three were evaluated within groups by Student’s t test for dependent samples).
a P<0.05 (Changes of means were evaluated between FO-N and CO-N by Student’s t test).
b P<0.05 (Changes of means were evaluated between FO-D and CO-D by Student’s t test).
c P<0.05 (Changes of means were evaluated between FO-N and FO-D by Student’s t test).
d P<0.05 (Changes of means were evaluated between CO-N and CO-D by Student’s t test).
A P<0.05 (Changes of means were evaluated between FO-N and CO-N group by ANCOVA using baseline as covariate).
B P<0.05 (Changes of means were evaluated between FO-D and CO-D group by ANCOVA using baseline as covariate).
_T trend of significance (P<0.1).
Figure 2Loop-Design of microarray experiments.
Figure 3Number of regulated genes. Number of genes that were regulated in the normolipidemic fish oil group (FO-N), normolipidemic corn oil group (CO-N), dyslipidemic corn oil group (CO-D), and dyslipidemic fish oil group (FO-D) after four hours (t4h), one week (t1) and twelve weeks (t12) of supplementation. Total regulated genes summarize all genes regulated during the different time points, without doubles, respectively.
Selected processes dominantly regulated in dys- and normolipidemic subjects in response to fish oil supplementation for four hours (t), one week (t) and twelve weeks (t) compared to corn oil supplementation
| Cell Communication | Carbohydrate Metabolism | Amino Acid Metabolism |
| Cell Growth and Death | Cardiovascular Diseases | Biosynthesis of Other |
| Circulatory System | Circulatory System | Secondary Metabolites |
| Digestive System | Digestive System | Cardiovascular Diseases |
| Endocrine System | Energy Metabolism | Cell Growth and Death |
| Excretory System | Folding, Sorting and | Endocrine System |
| Folding, Sorting and | Degradation | Energy Metabolism |
| Degradation | Lipid Metabolism | Excretory System |
| Immune System | Signal Transduction | Immune System |
| Lipid Metabolism | Signalling Molecules and | Immune System Diseases |
| Nervous System | Interaction | Lipid Metabolism |
| Signalling Molecules and Interaction | Xenobiotics Biodegradation and Metabolism | Metabolic Diseases |
| | | Metabolism of Cofactors and Vitamins |
| | | Metabolism of Other Amino Acids |
| | | Nervous System |
| | | Nucleotide Metabolism |
| Sensory System |
The selection was performed as follows: The number of regulated genes within pathways was counted for each group. Pathways were assigned to corresponding processes and the number of regulated genes in these pathways was summed up. The resulting data represent the number of regulated genes in different processes for each group. These numbers were compared between groups and those processes were selected where both fish oil treatment groups (FO-D, FO-N) showed more regulated genes compared with the corn oil treatment groups (CO-D, CO-N).
Selected pathways and genes dominantly regulated in dyslipidemic subjects (FO-D) in response to fish oil supplementation for twelve weeks
| Fatty acid biosynthesis | acetyl-CoA carboxylase beta | ACACB | 32 | -4.67 | |
| | Fatty acid elongation in mitochondria | hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit | HADHA | 3030 | -3.70 |
| | | hydroxyacyl-CoA dehydrogenase | HADH | 3033 | -2.34 |
| | Fatty acid metabolism | enoyl-CoA delta isomerase 2 | ECI2 | 10455 | -4.54 |
| | | enoyl-CoA delta isomerase 1 | ECI1 | 1632 | 6.02 |
| | | hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit | HADHA | 3030 | -3.70 |
| | | hydroxyacyl-CoA dehydrogenase | HADH | 3033 | -2.34 |
| | | acyl-CoA dehydrogenase, short/branched chain | ACADSB | 36 | -13.69 |
| | | aldehyde dehydrogenase 2 family (mitochondrial) | ALDH2 | 217 | 3.26 |
| | Glycerolipid metabolism | 1-acylglycerol-3-phosphate O-acyltransferase 6 | AGPAT6 | 137964 | 2.67 |
| | | diacylglycerol kinase, alpha 80 kDa | DGKA | 1606 | 2.47 |
| | | diacylglycerol kinase, eta | DGKH | 160851 | -3.05 |
| | | diacylglycerol kinase, theta 110 kDa | DGKQ | 1609 | 3.40 |
| | | aldehyde dehydrogenase 2 family (mitochondrial) | ALDH2 | 217 | 3.26 |
| | | monoacylglycerol O-acyltransferase 3 | MOGAT3 | 346606 | -3.48 |
| | Glycerophospholipid metabolism | 1-acylglycerol-3-phosphate O-acyltransferase 6 | AGPAT6 | 137964 | 2.67 |
| | | phospholipase B1 | PLB1 | 151056 | 11.68 |
| | | diacylglycerol kinase, alpha 80 kDa | DGKA | 1606 | 2.47 |
| | | diacylglycerol kinase, eta | DGKH | 160851 | -3.05 |
| | | diacylglycerol kinase, theta 110 kDa | DGKQ | 1609 | 3.40 |
| | | phospholipase A2, group IIE | PLA2G2E | 30814 | 2.51 |
| | | phosphatidylserine synthase 1 | PTDSS1 | 9791 | -2.84 |
| | Arachidonic acid metabolism | phospholipase B1 | PLB1 | 151056 | 11.68 |
| | | gamma-glutamyltransferase 5 | GGT5 | 2687 | 7.98 |
| | | glutathione peroxidase 3 (plasma) | GPX3 | 2878 | -2.15 |
| | | glutathione peroxidase 5 | GPX5 | 2880 | -2.41 |
| | | phospholipase A2, group IIE | PLA2G2E | 30814 | 2.51 |
| | Linoleic acid metabolism | phospholipase B1 | PLB1 | 151056 | 11.68 |
| | | phospholipase A2, group IIE | PLA2G2E | 30814 | 2.51 |
| | Alpha-linolenic acid metabolism | phospholipase B1 | PLB1 | 151056 | 11.68 |
| | | phospholipase A2, group IIE | PLA2G2E | 30814 | 2.51 |
| Complement and coagulation cascades | complement component (3b/4b) receptor 1 | CR1 | 1378 | -3.37 | |
| | | coagulation factor III (thromboplastin, tissue factor) | F3 | 2152 | -4.23 |
| | | fibrinogen gamma chain | FGG | 2266 | -12.30 |
| | | serpin peptidase inhibitor, clade C (antithrombin), member 1 | SERPINC1 | 462 | 3.23 |
| Arrhythmogenic right ventricular cardiomyopathy (ARVC) | desmocollin 2 | DSC2 | 1824 | -2.50 | |
| | | calcium channel, voltage-dependent, gamma subunit 5 | CACNG5 | 27091 | -9.92 |
| | | integrin, alpha 3 | ITGA3 | 3675 | -4.32 |
| | | transcription factor 7-like 1 | TCF7L1 | 83439 | -4.93 |
| | Dilated cardiomyopathy | adenylate cyclase 7 | ADCY7 | 113 | -2.13 |
| | | calcium channel, voltage-dependent, gamma subunit 5 | CACNG5 | 27091 | -9.92 |
| | | integrin, alpha 3 | ITGA3 | 3675 | -4.32 |
| myosin, light chain 2, regulatory, cardiac, slow | MYL2 | 4633 | 2.68 |
Selection of inflammation and immune response related genes regulated in dyslipidemic subjects after supplementation with fish oil for twelve weeks
| Nitric oxide synthase, inducible | NOS2 | 4843 | -4.77 |
| C-C chemokine receptor type 3 | CCR3 | 1232 | -4.49 |
| Tumour necrosis factor receptor superfamily member 18 Precursor | TNFRSF18 | 8784 | -2.07 |
| Interleukin-31 receptor A Precursor | IL31RA | 133396 | -4.74 |
| 72 kDa type IV collagenase Precursor | MMP2 | 4313 | -6.16 |
| Interleukin-8 Precursor | IL8 | 3576 | -5.67 |
| Tumour necrosis factor receptor superfamily member 5 Precursor | CD40 | 958 | -4.72 |
| Interleukin-2 receptor subunit beta Precursor | IL2RB | 3560 | -3.22 |
| Interleukin-3 receptor subunit alpha Precursor | IL3RA | 3563 | -2.22 |
| Stromelysin-1 Precursor | MMP3 | 4314 | -2.17 |
| C-C motif chemokine 5 Precursor | CCL5 | 6352 | 2.24 |
| CD97 antigen Precursor | CD97 | 976 | 2.26 |
| Prostaglandin D2 receptor | PTGDR | 5729 | 4.47 |
| Integrin alpha-L Precursor | ITGAL | 3683 | 5.07 |
| Arachidonate 5-lipoxygenase-activating protein (FLAP) | ALOX5AP | 241 | 6.97 |
| C-X-C motif chemokine 11 Precursor | CXCL11 | 6373 | -2.98 |
| NF-kappa-B-repressing factor | NKRF | 55922 | -82.11 |
| NF-kappa-B inhibitor-like protein 2 | NFKBIL2 | 4796 | -3.30 |
| Cytokine receptor-like factor 1 Precursor | CRLF1 | 9244 | -3.07 |
| Lipopolysaccharide-induced tumour necrosis factor-alpha factor | LITAF | 9516 | 3.06 |
| Interferon regulatory factor 1 | IRF1 | 3659 | 3.16 |
| Interferon-alpha/beta receptor alpha chain Precursor | IFNAR1 | 3454 | 5.13 |
| Suppressor of cytokine signalling 6 | SOCS6 | 9306 | 6.01 |
| Suppressor of cytokine signalling 2 | SOCS2 | 8835 | -6.05 |
| Disintegrin and metalloproteinase domain-containing protein 10 Precursor | ADAM10 | 102 | -5.23 |
| A disintegrin and metalloproteinase with thrombospondin motifs 10 Precursor | ADAMTS10 | 81794 | -3.14 |
| Nitric oxide synthase, endothelial | NOS3 | 4846 | -2.55 |
| SL cytokine Precursor | FLT3LG | 2323 | -2.46 |
| Prostaglandin E2 receptor EP3 subtype | PTGER3 | 5733 | -2.21 |
| CD99 antigen-like protein 2 Precursor | CD99L2 | 83692 | 2.18 |
| Cytokine receptor common gamma chain Precursor | IL2RG | 3561 | 2.85 |
| Monocyte differentiation antigen CD14 Precursor | CD14 | 929 | 2.88 |
| Chemokine-like factor (C32) | CKLF | 51192 | 11.73 |
| T-cell surface glycoprotein CD3 delta chain Precursor | CD3D | 915 | 7.65 |
| Tumour necrosis factor receptor superfamily member 1B Precursor | TNFRSF1B | 7133 | 2.51 |
| B-lymphocyte antigen CD20 | MS4A1 | 931 | 2.12 |
| Interleukin-31 receptor A Precursor | IL31RA | 133396 | 5.72 |
| Intercellular adhesion molecule 3 Precursor | ICAM3 | 3385 | 5.85 |
| CD320 antigen Precursor | CD320 | 51293 | 8.17 |
| CD2 antigen cytoplasmic tail-binding protein 2 | CD2BP2 | 10421 | 8.77 |
| T-cell antigen CD7 Precursor | CD7 | 924 | 2.30 |
| C-C chemokine receptor-like 2 (Putative MCP-1 chemokine receptor) | CCRL2 | 9034 | 17.55 |