Literature DB >> 22926438

How broadly tuned olfactory receptors equally recognize their agonists. Human OR1G1 as a test case.

Landry Charlier1, Jérémie Topin, Catherine Ronin, Soo-Kyung Kim, William A Goddard, Roman Efremov, Jérôme Golebiowski.   

Abstract

The molecular features that dominate the binding mode of agonists by a broadly tuned olfactory receptor are analyzed through a joint approach combining cell biology, calcium imaging, and molecular modeling. The odorant/receptor affinities, estimated through statistics accrued during molecular dynamics simulations, are in accordance with the experimental ranking. Although in many systems receptors recognize their target through a network of oriented interactions, such as H-bonding, the binding by broadly tuned olfactory receptors is dominated by non-polar terms. We show how such a feature allows chemicals belonging to different chemical families to similarly activate the receptors through compensations of interactions within the binding site.

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Year:  2012        PMID: 22926438     DOI: 10.1007/s00018-012-1116-0

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  35 in total

1.  Prediction of a ligand-binding niche within a human olfactory receptor by combining site-directed mutagenesis with dynamic homology modeling.

Authors:  Lian Gelis; Steffen Wolf; Hanns Hatt; Eva M Neuhaus; Klaus Gerwert
Journal:  Angew Chem Int Ed Engl       Date:  2011-12-05       Impact factor: 15.336

2.  Binding free energy prediction in strongly hydrophobic biomolecular systems.

Authors:  Landry Charlier; Claude Nespoulous; Sébastien Fiorucci; Serge Antonczak; Jérome Golebiowski
Journal:  Phys Chem Chem Phys       Date:  2007-11-21       Impact factor: 3.676

3.  Odor cannot be predicted by molecular shape.

Authors:  Charles Sell
Journal:  Chem Senses       Date:  2008-11-11       Impact factor: 3.160

4.  Structural basis for a broad but selective ligand spectrum of a mouse olfactory receptor: mapping the odorant-binding site.

Authors:  Sayako Katada; Takatsugu Hirokawa; Yuki Oka; Makiko Suwa; Kazushige Touhara
Journal:  J Neurosci       Date:  2005-02-16       Impact factor: 6.167

5.  Test of the Binding Threshold Hypothesis for olfactory receptors: explanation of the differential binding of ketones to the mouse and human orthologs of olfactory receptor 912-93.

Authors:  Patrick Hummel; Nagarajan Vaidehi; Wely B Floriano; Spencer E Hall; William A Goddard
Journal:  Protein Sci       Date:  2005-03       Impact factor: 6.725

6.  Complexes of porcine odorant binding protein with odorant molecules belonging to different chemical classes.

Authors:  F Vincent; S Spinelli; R Ramoni; S Grolli; P Pelosi; C Cambillau; M Tegoni
Journal:  J Mol Biol       Date:  2000-06-30       Impact factor: 5.469

7.  Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations.

Authors:  Ravinder Abrol; Jenelle K Bray; William A Goddard
Journal:  Proteins       Date:  2011-12-15

8.  Automatic modeling of mammalian olfactory receptors and docking of odorants.

Authors:  Guillaume Launay; Stéphane Téletchéa; Fallou Wade; Edith Pajot-Augy; Jean-François Gibrat; Guenhaël Sanz
Journal:  Protein Eng Des Sel       Date:  2012-06-12       Impact factor: 1.650

9.  Relationships between molecular structure and perceived odor quality of ligands for a human olfactory receptor.

Authors:  Guenhaël Sanz; Thierry Thomas-Danguin; El Hassan Hamdani; Claire Le Poupon; Loïc Briand; Jean-Claude Pernollet; Elisabeth Guichard; Anne Tromelin
Journal:  Chem Senses       Date:  2008-07-05       Impact factor: 3.160

10.  Solubilisation and binding characteristics of a recombinant beta2-adrenergic receptor expressed in the membrane of Escherichia coli for the multianalyte detection of beta-agonists and antagonists residues in food-producing animals.

Authors:  Sophie Danyi; Guy Degand; Colette Duez; Benoît Granier; Guy Maghuin-Rogister; Marie-Louise Scippo
Journal:  Anal Chim Acta       Date:  2007-02-25       Impact factor: 6.558

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  18 in total

1.  Responsiveness of G protein-coupled odorant receptors is partially attributed to the activation mechanism.

Authors:  Yiqun Yu; Claire A de March; Mengjue J Ni; Kaylin A Adipietro; Jérôme Golebiowski; Hiroaki Matsunami; Minghong Ma
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-16       Impact factor: 11.205

2.  Predicting glycosaminoglycan surface protein interactions and implications for studying axonal growth.

Authors:  Adam R Griffith; Claude J Rogers; Gregory M Miller; Ravinder Abrol; Linda C Hsieh-Wilson; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-11       Impact factor: 11.205

3.  Structural determinants of a conserved enantiomer-selective carvone binding pocket in the human odorant receptor OR1A1.

Authors:  Christiane Geithe; Jonas Protze; Franziska Kreuchwig; Gerd Krause; Dietmar Krautwurst
Journal:  Cell Mol Life Sci       Date:  2017-06-27       Impact factor: 9.261

4.  Conserved Residues Control Activation of Mammalian G Protein-Coupled Odorant Receptors.

Authors:  Claire A de March; Yiqun Yu; Mengjue J Ni; Kaylin A Adipietro; Hiroaki Matsunami; Minghong Ma; Jérôme Golebiowski
Journal:  J Am Chem Soc       Date:  2015-06-29       Impact factor: 15.419

5.  Functional molecular switches of mammalian G protein-coupled bitter-taste receptors.

Authors:  Jérémie Topin; Cédric Bouysset; Jody Pacalon; Yiseul Kim; Mee-Ra Rhyu; Sébastien Fiorucci; Jérôme Golebiowski
Journal:  Cell Mol Life Sci       Date:  2021-10-23       Impact factor: 9.261

6.  Zebrafish olfactory receptors ORAs differentially detect bile acids and bile salts.

Authors:  Xiaojing Cong; Qian Zheng; Wenwen Ren; Jean-Baptiste Chéron; Sébastien Fiorucci; Tieqiao Wen; Chunbo Zhang; Hongmeng Yu; Jérôme Golebiowski; Yiqun Yu
Journal:  J Biol Chem       Date:  2019-03-04       Impact factor: 5.157

7.  Molecular mechanism of activation of human musk receptors OR5AN1 and OR1A1 by (R)-muscone and diverse other musk-smelling compounds.

Authors:  Lucky Ahmed; Yuetian Zhang; Eric Block; Michael Buehl; Michael J Corr; Rodrigo A Cormanich; Sivaji Gundala; Hiroaki Matsunami; David O'Hagan; Mehmet Ozbil; Yi Pan; Sivakumar Sekharan; Nicholas Ten; Mingan Wang; Mingyan Yang; Qingzhi Zhang; Ruina Zhang; Victor S Batista; Hanyi Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205

8.  Predicted 3D structures of olfactory receptors with details of odorant binding to OR1G1.

Authors:  Soo-Kyung Kim; William A Goddard
Journal:  J Comput Aided Mol Des       Date:  2014-09-16       Impact factor: 3.686

9.  Mammalian class I odorant receptors exhibit a conserved vestibular-binding pocket.

Authors:  Caroline Bushdid; Claire A de March; Jérémie Topin; Matthew Do; Hiroaki Matsunami; Jérôme Golebiowski
Journal:  Cell Mol Life Sci       Date:  2019-01-01       Impact factor: 9.261

10.  Bitter Taste and Olfactory Receptors: Beyond Chemical Sensing in the Tongue and the Nose.

Authors:  Mercedes Alfonso-Prieto
Journal:  J Membr Biol       Date:  2021-06-25       Impact factor: 1.843

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