Literature DB >> 22918590

The RFC clamp loader: structure and function.

Nina Y Yao1, Mike O'Donnell.   

Abstract

The eukaryotic RFC clamp loader couples the energy of ATP hydrolysis to open and close the circular PCNA sliding clamp onto primed sites for use by DNA polymerases and repair factors. Structural studies reveal clamp loaders to be heteropentamers. Each subunit contains a region of homology to AAA+ proteins that defines two domains. The AAA+ domains form a right-handed spiral upon binding ATP. This spiral arrangement generates a DNA binding site within the center of RFC. DNA enters the central chamber through a gap between the AAA+ domains of two subunits. Specificity for a primed template junction is achieved by a third domain that blocks DNA, forcing it to bend sharply. Thus only DNA with a flexible joint can bind the central chamber. DNA entry also requires a slot in the PCNA clamp, which is opened upon binding the AAA+ domains of the clamp loader. ATP hydrolysis enables clamp closing and ejection of RFC, completing the clamp loading reaction.

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Year:  2012        PMID: 22918590      PMCID: PMC3711244          DOI: 10.1007/978-94-007-4572-8_14

Source DB:  PubMed          Journal:  Subcell Biochem        ISSN: 0306-0225


  80 in total

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Authors:  J C Eissenberg; R Ayyagari; X V Gomes; P M Burgers
Journal:  Mol Cell Biol       Date:  1997-11       Impact factor: 4.272

2.  A molecular switch in a replication machine defined by an internal competition for protein rings.

Authors:  V Naktinis; J Turner; M O'Donnell
Journal:  Cell       Date:  1996-01-12       Impact factor: 41.582

3.  Anatomy of a DNA replication fork revealed by reconstitution of SV40 DNA replication in vitro.

Authors:  S Waga; B Stillman
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

4.  Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III.

Authors:  B Guenther; R Onrust; A Sali; M O'Donnell; J Kuriyan
Journal:  Cell       Date:  1997-10-31       Impact factor: 41.582

5.  Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA.

Authors:  J M Gulbis; Z Kelman; J Hurwitz; M O'Donnell; J Kuriyan
Journal:  Cell       Date:  1996-10-18       Impact factor: 41.582

6.  Clamp loading, unloading and intrinsic stability of the PCNA, beta and gp45 sliding clamps of human, E. coli and T4 replicases.

Authors:  N Yao; J Turner; Z Kelman; P T Stukenberg; F Dean; D Shechter; Z Q Pan; J Hurwitz; M O'Donnell
Journal:  Genes Cells       Date:  1996-01       Impact factor: 1.891

7.  Deletion analysis of the large subunit p140 in human replication factor C reveals regions required for complex formation and replication activities.

Authors:  F Uhlmann; J Cai; E Gibbs; M O'Donnell; J Hurwitz
Journal:  J Biol Chem       Date:  1997-04-11       Impact factor: 5.157

8.  Characterization of the five replication factor C genes of Saccharomyces cerevisiae.

Authors:  G Cullmann; K Fien; R Kobayashi; B Stillman
Journal:  Mol Cell Biol       Date:  1995-09       Impact factor: 4.272

9.  A mutational analysis of the yeast proliferating cell nuclear antigen indicates distinct roles in DNA replication and DNA repair.

Authors:  R Ayyagari; K J Impellizzeri; B L Yoder; S L Gary; P M Burgers
Journal:  Mol Cell Biol       Date:  1995-08       Impact factor: 4.272

10.  Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA.

Authors:  T S Krishna; X P Kong; S Gary; P M Burgers; J Kuriyan
Journal:  Cell       Date:  1994-12-30       Impact factor: 41.582

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3.  Quality control mechanisms exclude incorrect polymerases from the eukaryotic replication fork.

Authors:  Grant D Schauer; Michael E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-09       Impact factor: 11.205

Review 4.  Small Proteins in Archaea, a Mainly Unexplored World.

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Journal:  J Bacteriol       Date:  2021-09-20       Impact factor: 3.476

5.  Gene expression profiling and protein-protein interaction analysis reveals the dynamic role of MCM7 in Alzheimer's disorder and breast cancer.

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6.  A Single Amino Acid Substitution in RFC4 Leads to Endoduplication and Compromised Resistance to DNA Damage in Arabidopsis thaliana.

Authors:  Kan Cui; Lei Qin; Xianyu Tang; Jieying Nong; Jin Chen; Nan Wu; Xin Gong; Lixiong Yi; Chenghuizi Yang; Shitou Xia
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7.  Thermococcus kodakarensis has two functional PCNA homologs but only one is required for viability.

Authors:  Miao Pan; Thomas J Santangelo; Lubomíra Čuboňová; Zhuo Li; Harlette Metangmo; Jane Ladner; Jerard Hurwitz; John N Reeve; Zvi Kelman
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Review 8.  A structural view of the initiators for chromosome replication.

Authors:  Kin Fan On; Matt Jaremko; Bruce Stillman; Leemor Joshua-Tor
Journal:  Curr Opin Struct Biol       Date:  2018-09-12       Impact factor: 6.809

Review 9.  Chromosome Duplication in Saccharomyces cerevisiae.

Authors:  Stephen P Bell; Karim Labib
Journal:  Genetics       Date:  2016-07       Impact factor: 4.562

10.  Stepwise assembly of the human replicative polymerase holoenzyme.

Authors:  Mark Hedglin; Senthil K Perumal; Zhenxin Hu; Stephen Benkovic
Journal:  Elife       Date:  2013-04-02       Impact factor: 8.140

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