Literature DB >> 22915605

Evaluation of two hepatitis C virus genotyping assays based on the 5' untranslated region (UTR): the limitations of 5' UTR-based assays and the need for a supplementary sequencing-based approach.

Sung Kuk Hong1, Sung Im Cho, Eun Kyung Ra, Eui-Chong Kim, Joon Sung Park, Sung Sup Park, Moon-Woo Seong.   

Abstract

We evaluated two genotyping methodologies that characterize the 5' untranslated region (5' UTR) of the hepatitis C virus (HCV) genome. The limitations of these genotype assays need to be thoroughly evaluated, and sequencing-based approaches may be needed to complement these methods in clinical settings.

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Year:  2012        PMID： 22915605      PMCID： PMC3486248          DOI： 10.1128/JCM.02034-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  11 in total

1.  Diagnosis, management, and treatment of hepatitis C.

Authors:  Doris B Strader; Teresa Wright; David L Thomas; Leonard B Seeff
Journal:  Hepatology       Date:  2004-04       Impact factor: 17.425

2.  Variation of the hepatitis C virus 5' non-coding region: implications for secondary structure, virus detection and typing. The International HCV Collaborative Study Group.

Authors:  D B Smith; J Mellor; L M Jarvis; F Davidson; J Kolberg; M Urdea; P L Yap; P Simmonds
Journal:  J Gen Virol       Date:  1995-07       Impact factor: 3.891

3.  A multicenter evaluation of the Abbott RealTime HCV Genotype II assay.

Authors:  Marco Ciotti; Fabbio Marcuccilli; Tania Guenci; Muhammed Babakir-Mina; Federico Chiodo; Mose' Favarato; Carlo Federico Perno
Journal:  J Virol Methods       Date:  2010-03-31       Impact factor: 2.014

Review 4.  Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes.

Authors:  Peter Simmonds; Jens Bukh; Christophe Combet; Gilbert Deléage; Nobuyuki Enomoto; Stephen Feinstone; Phillippe Halfon; Geneviève Inchauspé; Carla Kuiken; Geert Maertens; Masashi Mizokami; Donald G Murphy; Hiroaki Okamoto; Jean-Michel Pawlotsky; François Penin; Erwin Sablon; Tadasu Shin-I; Lieven J Stuyver; Heinz-Jürgen Thiel; Sergei Viazov; Amy J Weiner; Anders Widell
Journal:  Hepatology       Date:  2005-10       Impact factor: 17.425

5.  Correlation of the 5'untranslated region (5'UTR) and non-structural 5B (NS5B) nucleotide sequences in hepatitis C virus subtyping.

Authors:  Michael O Baclig; Veronica F Chan; John Donnie A Ramos; Juliet Gopez-Cervantes; Filipinas F Natividad
Journal:  Int J Mol Epidemiol Genet       Date:  2010-07-07

6.  Population genotyping of hepatitis C virus by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis of short DNA fragments.

Authors:  Yoon Jun Kim; Soo-Ok Kim; Hyun Jae Chung; Mi Sun Jee; Byeong Gwan Kim; Kang Mo Kim; Jung-Hwan Yoon; Hyo-Suk Lee; Chung Yong Kim; Sukjoon Kim; Wangdon Yoo; Sun Pyo Hong
Journal:  Clin Chem       Date:  2005-05-12       Impact factor: 8.327

Review 7.  Chronic hepatitis C and genotyping: the clinical significance of determining HCV genotypes.

Authors:  H James Hnatyszyn
Journal:  Antivir Ther       Date:  2005

8.  Identification of hepatitis C virus genotype 6 in Korean patients by analysis of 5' untranslated region using a matrix assisted laser desorption/ionization time of flight-based assay, restriction fragment mass polymorphism.

Authors:  Heung-Bum Oh; Soo-Ok Kim; Choong-Hwan Cha; Sun Pyo Hong; William R Folk; Kang Mo Kim; Dong Jin Suh
Journal:  J Med Virol       Date:  2008-10       Impact factor: 2.327

9.  Diagnosis, management, and treatment of hepatitis C: an update.

Authors:  Marc G Ghany; Doris B Strader; David L Thomas; Leonard B Seeff
Journal:  Hepatology       Date:  2009-04       Impact factor: 17.425

10.  Comparative performance evaluation of hepatitis C virus genotyping based on the 5' untranslated region versus partial sequencing of the NS5B region of brazilian patients with chronic hepatitis C.

Authors:  Sueli M Nakatani; Carlos A Santos; Irina N Riediger; Marco A Krieger; Cesar A B Duarte; Maria do Carmo Debur; Flair J Carrilho; Suzane K Ono
Journal:  Virol J       Date:  2011-10-03       Impact factor: 4.099
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  5 in total

Review 1.  KASL clinical practice guidelines: management of hepatitis C.

Authors: 
Journal:  Clin Mol Hepatol       Date:  2016-03-28

2.  Rapid hepatitis C virus divergence among chronically infected individuals.

Authors:  Mayra Cruz-Rivera; Juan Carlos Carpio-Pedroza; Alejandro Escobar-Gutiérrez; Daniela Lozano; Arely Vergara-Castaneda; Pilar Rivera-Osorio; Armando Martinez-Guarneros; Carlos A Vazquez Chacon; Salvador Fonseca-Coronado; Gilberto Vaughan
Journal:  J Clin Microbiol       Date:  2012-12-05       Impact factor: 5.948

3.  High-resolution hepatitis C virus subtyping using NS5B deep sequencing and phylogeny, an alternative to current methods.

Authors:  Josep Quer; Josep Gregori; Francisco Rodríguez-Frias; Maria Buti; Antonio Madejon; Sofia Perez-del-Pulgar; Damir Garcia-Cehic; Rosario Casillas; Maria Blasi; Maria Homs; David Tabernero; Miguel Alvarez-Tejado; Jose Manuel Muñoz; Maria Cubero; Andrea Caballero; Jose Antonio del Campo; Esteban Domingo; Irene Belmonte; Leonardo Nieto; Sabela Lens; Paloma Muñoz-de-Rueda; Paloma Sanz-Cameno; Silvia Sauleda; Marta Bes; Jordi Gomez; Carlos Briones; Celia Perales; Julie Sheldon; Lluis Castells; Lluis Viladomiu; Javier Salmeron; Angela Ruiz-Extremera; Rosa Quiles-Pérez; Ricardo Moreno-Otero; Rosario López-Rodríguez; Helena Allende; Manuel Romero-Gómez; Jaume Guardia; Rafael Esteban; Javier Garcia-Samaniego; Xavier Forns; Juan Ignacio Esteban
Journal:  J Clin Microbiol       Date:  2014-11-05       Impact factor: 5.948

4.  A reliable multiplex genotyping assay for HCV using a suspension bead array.

Authors:  Yi-Chen Yang; Der-Yuan Wang; Hwei-Fang Cheng; Eric Y Chuang; Mong-Hsun Tsai
Journal:  Microb Biotechnol       Date:  2014-07-10       Impact factor: 5.813

5.  Assessment of a Novel Automatic Real-Time PCR Assay on the Cobas 4800 Analyzer as a Screening Platform for Hepatitis C Virus Genotyping in Clinical Practice: Comparison with Massive Sequencing.

Authors:  Leonardo Nieto-Aponte; Josep Quer; Alicia Ruiz-Ripa; David Tabernero; Carolina Gonzalez; Josep Gregori; Marta Vila; Miriam Asensio; Damir Garcia-Cehic; Gerardo Ruiz; Qian Chen; Laura Ordeig; Meritxell Llorens; Montserrat Saez; Juan I Esteban; Rafael Esteban; Maria Buti; Tomas Pumarola; Francisco Rodriguez-Frias
Journal:  J Clin Microbiol       Date:  2016-12-07       Impact factor: 5.948
  5 in total

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