Literature DB >> 22908244

Meso-scale turbulence in living fluids.

Henricus H Wensink1, Jörn Dunkel, Sebastian Heidenreich, Knut Drescher, Raymond E Goldstein, Hartmut Löwen, Julia M Yeomans.   

Abstract

Turbulence is ubiquitous, from oceanic currents to small-scale biological and quantum systems. Self-sustained turbulent motion in microbial suspensions presents an intriguing example of collective dynamical behavior among the simplest forms of life and is important for fluid mixing and molecular transport on the microscale. The mathematical characterization of turbulence phenomena in active nonequilibrium fluids proves even more difficult than for conventional liquids or gases. It is not known which features of turbulent phases in living matter are universal or system-specific or which generalizations of the Navier-Stokes equations are able to describe them adequately. Here, we combine experiments, particle simulations, and continuum theory to identify the statistical properties of self-sustained meso-scale turbulence in active systems. To study how dimensionality and boundary conditions affect collective bacterial dynamics, we measured energy spectra and structure functions in dense Bacillus subtilis suspensions in quasi-2D and 3D geometries. Our experimental results for the bacterial flow statistics agree well with predictions from a minimal model for self-propelled rods, suggesting that at high concentrations the collective motion of the bacteria is dominated by short-range interactions. To provide a basis for future theoretical studies, we propose a minimal continuum model for incompressible bacterial flow. A detailed numerical analysis of the 2D case shows that this theory can reproduce many of the experimentally observed features of self-sustained active turbulence.

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Year:  2012        PMID: 22908244      PMCID: PMC3437854          DOI: 10.1073/pnas.1202032109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Large-scale collective properties of self-propelled rods.

Authors:  Francesco Ginelli; Fernando Peruani; Markus Bär; Hugues Chaté
Journal:  Phys Rev Lett       Date:  2010-05-04       Impact factor: 9.161

Review 2.  Quorum sensing: cell-to-cell communication in bacteria.

Authors:  Christopher M Waters; Bonnie L Bassler
Journal:  Annu Rev Cell Dev Biol       Date:  2005       Impact factor: 13.827

3.  A self-organized vortex array of hydrodynamically entrained sperm cells.

Authors:  Ingmar H Riedel; Karsten Kruse; Jonathon Howard
Journal:  Science       Date:  2005-07-08       Impact factor: 47.728

4.  Concentration dependence of the collective dynamics of swimming bacteria.

Authors:  Andrey Sokolov; Igor S Aranson; John O Kessler; Raymond E Goldstein
Journal:  Phys Rev Lett       Date:  2007-04-11       Impact factor: 9.161

5.  Reduction of viscosity in suspension of swimming bacteria.

Authors:  Andrey Sokolov; Igor S Aranson
Journal:  Phys Rev Lett       Date:  2009-09-29       Impact factor: 9.161

6.  Energy transport in a concentrated suspension of bacteria.

Authors:  T Ishikawa; N Yoshida; H Ueno; M Wiedeman; Y Imai; T Yamaguchi
Journal:  Phys Rev Lett       Date:  2011-07-07       Impact factor: 9.161

7.  Oscillatory flows induced by microorganisms swimming in two dimensions.

Authors:  Jeffrey S Guasto; Karl A Johnson; J P Gollub
Journal:  Phys Rev Lett       Date:  2010-10-11       Impact factor: 9.161

8.  Scale-free correlations in starling flocks.

Authors:  Andrea Cavagna; Alessio Cimarelli; Irene Giardina; Giorgio Parisi; Raffaele Santagati; Fabio Stefanini; Massimiliano Viale
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

9.  Inferring the structure and dynamics of interactions in schooling fish.

Authors:  Yael Katz; Kolbjørn Tunstrøm; Christos C Ioannou; Cristián Huepe; Iain D Couzin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-27       Impact factor: 11.205

10.  Statistical mechanics and hydrodynamics of bacterial suspensions.

Authors:  Aparna Baskaran; M Cristina Marchetti
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-28       Impact factor: 11.205

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  92 in total

1.  Self-phoretic active particles interacting by diffusiophoresis: A numerical study of the collapsed state and dynamic clustering.

Authors:  Oliver Pohl; Holger Stark
Journal:  Eur Phys J E Soft Matter       Date:  2015-08-31       Impact factor: 1.890

2.  Random bursts determine dynamics of active filaments.

Authors:  Christoph A Weber; Ryo Suzuki; Volker Schaller; Igor S Aranson; Andreas R Bausch; Erwin Frey
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-10       Impact factor: 11.205

3.  Active matter: Fleeting defects line up.

Authors:  Denis Bartolo
Journal:  Nat Mater       Date:  2015-11       Impact factor: 43.841

4.  New class of turbulence in active fluids.

Authors:  Vasil Bratanov; Frank Jenko; Erwin Frey
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

5.  Shape control and compartmentalization in active colloidal cells.

Authors:  Matthew Spellings; Michael Engel; Daphne Klotsa; Syeda Sabrina; Aaron M Drews; Nguyen H P Nguyen; Kyle J M Bishop; Sharon C Glotzer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-07       Impact factor: 11.205

6.  Hysteresis, reentrance, and glassy dynamics in systems of self-propelled rods.

Authors:  Hui-Shun Kuan; Robert Blackwell; Loren E Hough; Matthew A Glaser; M D Betterton
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-12-31

7.  Spontaneous flow in polar active fluids: the effect of a phenomenological self propulsion-like term.

Authors:  Francesco Bonelli; Giuseppe Gonnella; Adriano Tiribocchi; Davide Marenduzzo
Journal:  Eur Phys J E Soft Matter       Date:  2016-01-14       Impact factor: 1.890

Review 8.  Shelter in a Swarm.

Authors:  Rasika M Harshey; Jonathan D Partridge
Journal:  J Mol Biol       Date:  2015-08-12       Impact factor: 5.469

9.  Correlation properties of collective motion in bacterial suspensions.

Authors:  Shawn D Ryan; Andrey Sokolov; Leonid Berlyand; Igor S Aranson
Journal:  New J Phys       Date:  2013-09       Impact factor: 3.729

10.  Gait synchronization in Caenorhabditis elegans.

Authors:  Jinzhou Yuan; David M Raizen; Haim H Bau
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

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