Literature DB >> 19717428

Statistical mechanics and hydrodynamics of bacterial suspensions.

Aparna Baskaran1, M Cristina Marchetti.   

Abstract

Unicellular living organisms, such as bacteria and algae, propel themselves through a medium via cyclic strokes involving the motion of cilia and flagella. Dense populations of such "active particles" or "swimmers" exhibit a rich collective behavior at large scales. Starting with a minimal physical model of a stroke-averaged swimmer in a fluid, we derive a continuum description of a suspension of active organisms that incorporates fluid-mediated, long-range hydrodynamic interactions among the swimmers. Our work demonstrates that hydrodynamic interactions provide a simple, generic origin for several nonequilibrium phenomena predicted or observed in the literature. The continuum model derived here does not depend on the microscopic physical model of the individual swimmer. The details of the large-scale physics do, however, differ for "shakers" (particles that are active but not self-propelled, such as melanocytes) and "movers" (self-propelled particles), "pushers" (most bacteria) and "pullers" (algae like Chlamydomonas). Our work provides a classification of the large-scale behavior of all these systems.

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Year:  2009        PMID: 19717428      PMCID: PMC2747162          DOI: 10.1073/pnas.0906586106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Novel type of phase transition in a system of self-driven particles.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-08-07       Impact factor: 9.161

2.  Rheology of active-particle suspensions.

Authors:  Yashodhan Hatwalne; Sriram Ramaswamy; Madan Rao; R Aditi Simha
Journal:  Phys Rev Lett       Date:  2004-03-19       Impact factor: 9.161

3.  Asters, vortices, and rotating spirals in active gels of polar filaments.

Authors:  K Kruse; J F Joanny; F Jülicher; J Prost; K Sekimoto
Journal:  Phys Rev Lett       Date:  2004-02-20       Impact factor: 9.161

4.  Self-concentration and large-scale coherence in bacterial dynamics.

Authors:  Christopher Dombrowski; Luis Cisneros; Sunita Chatkaew; Raymond E Goldstein; John O Kessler
Journal:  Phys Rev Lett       Date:  2004-08-24       Impact factor: 9.161

5.  A self-organized vortex array of hydrodynamically entrained sperm cells.

Authors:  Ingmar H Riedel; Karsten Kruse; Jonathon Howard
Journal:  Science       Date:  2005-07-08       Impact factor: 47.728

6.  Pattern formation of microtubules and motors: inelastic interaction of polar rods.

Authors:  Igor S Aranson; Lev S Tsimring
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-05-10

7.  Boltzmann and hydrodynamic description for self-propelled particles.

Authors:  Eric Bertin; Michel Droz; Guillaume Grégoire
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-08-02

8.  Hydrodynamic interaction between two swimmers at low Reynolds number.

Authors:  C M Pooley; G P Alexander; J M Yeomans
Journal:  Phys Rev Lett       Date:  2007-11-28       Impact factor: 9.161

9.  Enhanced diffusion and ordering of self-propelled rods.

Authors:  Aparna Baskaran; M Cristina Marchetti
Journal:  Phys Rev Lett       Date:  2008-12-31       Impact factor: 9.161

10.  No many-scallop theorem: collective locomotion of reciprocal swimmers.

Authors:  Eric Lauga; Denis Bartolo
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-09-29
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  32 in total

1.  Phase separation and rotor self-assembly in active particle suspensions.

Authors:  J Schwarz-Linek; C Valeriani; A Cacciuto; M E Cates; D Marenduzzo; A N Morozov; W C K Poon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-05       Impact factor: 11.205

2.  Minimal polar swimmer at low Reynolds number.

Authors:  Ankita Pandey; R Aditi Simha
Journal:  Eur Phys J E Soft Matter       Date:  2012-06-26       Impact factor: 1.890

3.  Polar patterns of driven filaments.

Authors:  Volker Schaller; Christoph Weber; Christine Semmrich; Erwin Frey; Andreas R Bausch
Journal:  Nature       Date:  2010-09-02       Impact factor: 49.962

4.  Collective motion and density fluctuations in bacterial colonies.

Authors:  H P Zhang; Avraham Be'er; E-L Florin; Harry L Swinney
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

5.  Arrested phase separation in reproducing bacteria creates a generic route to pattern formation.

Authors:  M E Cates; D Marenduzzo; I Pagonabarraga; J Tailleur
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-24       Impact factor: 11.205

6.  Emergence of phytoplankton patchiness at small scales in mild turbulence.

Authors:  Rebekka E Breier; Cristian C Lalescu; Devin Waas; Michael Wilczek; Marco G Mazza
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-08       Impact factor: 11.205

7.  Fluid dynamics and noise in bacterial cell-cell and cell-surface scattering.

Authors:  Knut Drescher; Jörn Dunkel; Luis H Cisneros; Sujoy Ganguly; Raymond E Goldstein
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

8.  Lévy fluctuations and mixing in dilute suspensions of algae and bacteria.

Authors:  Irwin M Zaid; Jörn Dunkel; Julia M Yeomans
Journal:  J R Soc Interface       Date:  2011-02-23       Impact factor: 4.118

9.  Capillary-based static self-assembly in higher organisms.

Authors:  Jonathan Voise; Michael Schindler; Jérôme Casas; Elie Raphaël
Journal:  J R Soc Interface       Date:  2011-03-02       Impact factor: 4.118

10.  Gait synchronization in Caenorhabditis elegans.

Authors:  Jinzhou Yuan; David M Raizen; Haim H Bau
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

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