Literature DB >> 25418165

Domain and interdomain energetics underlying gating in Shaker-type Kv channels.

Alexander Peyser1, Dirk Gillespie2, Roland Roth3, Wolfgang Nonner4.   

Abstract

To understand gating events with a time-base many orders-of-magnitude slower than that of atomic motion in voltage-gated ion channels such as the Shaker-type KV channels, a multiscale physical model is constructed from the experimentally well-characterized voltage-sensor (VS) domains coupled to a hydrophobic gate. The four VS domains are described by a continuum electrostatic model under voltage-clamp conditions, the control of ion flow by the gate domain is described by a vapor-lock mechanism, and the simple coupling principle is informed by known experimental results and trial-and-error. The configurational energy computed for each element is used to produce a total Hamiltonian that is a function of applied voltage, VS positions, and gate radius. We compute statistical-mechanical expectation values of macroscopic laboratory observables. This approach stands in contrast with molecular-dynamic models which are challenged by increasing scale, and kinetic models which assume a probability distribution rather than derive it from the underlying physics. This generic model predicts well the Shaker charge/voltage and conductance/voltage relations; the tight constraints underlying these results allow us to quantitatively assess the underlying physical mechanisms. The total electrical work picked up by the VS domains is an order-of-magnitude larger than the work required to actuate the gate itself, suggesting an energetic basis for the evolutionary flexibility of the voltage-gating mechanism. The cooperative slide-and-interlock behavior of the VS domains described by the VS-gate coupling relation leads to the experimentally observed bistable gating. This engineering approach should prove useful in the investigation of various elements underlying gating characteristics and degraded behavior due to mutation.

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Year:  2014        PMID: 25418165      PMCID: PMC4213693          DOI: 10.1016/j.bpj.2014.08.015

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

1.  Mechanism of voltage gating in potassium channels.

Authors:  Morten Ø Jensen; Vishwanath Jogini; David W Borhani; Abba E Leffler; Ron O Dror; David E Shaw
Journal:  Science       Date:  2012-04-13       Impact factor: 47.728

2.  KCNE1 alters the voltage sensor movements necessary to open the KCNQ1 channel gate.

Authors:  Jeremiah D Osteen; Carlos Gonzalez; Kevin J Sampson; Vivek Iyer; Santiago Rebolledo; H Peter Larsson; Robert S Kass
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

3.  Voltage sensor of Kv1.2: structural basis of electromechanical coupling.

Authors:  Stephen B Long; Ernest B Campbell; Roderick Mackinnon
Journal:  Science       Date:  2005-07-07       Impact factor: 47.728

4.  A limited 4 Å radial displacement of the S4-S5 linker is sufficient for internal gate closing in Kv channels.

Authors:  Élise Faure; Greg Starek; Hugo McGuire; Simon Bernèche; Rikard Blunck
Journal:  J Biol Chem       Date:  2012-09-27       Impact factor: 5.157

5.  Single Na+ channel currents observed in cultured rat muscle cells.

Authors:  F J Sigworth; E Neher
Journal:  Nature       Date:  1980-10-02       Impact factor: 49.962

6.  Activation of Shaker potassium channels. III. An activation gating model for wild-type and V2 mutant channels.

Authors:  N E Schoppa; F J Sigworth
Journal:  J Gen Physiol       Date:  1998-02       Impact factor: 4.086

7.  Water dynamics and dewetting transitions in the small mechanosensitive channel MscS.

Authors:  Andriy Anishkin; Sergei Sukharev
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

8.  Atomic structure of a voltage-dependent K+ channel in a lipid membrane-like environment.

Authors:  Stephen B Long; Xiao Tao; Ernest B Campbell; Roderick MacKinnon
Journal:  Nature       Date:  2007-11-15       Impact factor: 49.962

9.  Molecular dynamics investigation of the ω-current in the Kv1.2 voltage sensor domains.

Authors:  Fatemeh Khalili-Araghi; Emad Tajkhorshid; Benoît Roux; Klaus Schulten
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

10.  Shaker potassium channel gating. III: Evaluation of kinetic models for activation.

Authors:  W N Zagotta; T Hoshi; R W Aldrich
Journal:  J Gen Physiol       Date:  1994-02       Impact factor: 4.086

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  2 in total

1.  Computational methods and theory for ion channel research.

Authors:  C Guardiani; F Cecconi; L Chiodo; G Cottone; P Malgaretti; L Maragliano; M L Barabash; G Camisasca; M Ceccarelli; B Corry; R Roth; A Giacomello; B Roux
Journal:  Adv Phys X       Date:  2022

2.  Multiscale modeling shows that dielectric differences make NaV channels faster than KV channels.

Authors:  Luigi Catacuzzeno; Luigi Sforna; Fabio Franciolini; Robert S Eisenberg
Journal:  J Gen Physiol       Date:  2021-02-01       Impact factor: 4.086

  2 in total

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