Literature DB >> 22904960

(E)-2-(2,3-Dimethyl-anilino)-N'-(thio-phen-2-yl-methyl-idene)benzohydrazide.

Hoong-Kun Fun, Tze Shyang Chia, Mashooq A Bhat, Mohamed A Al-Omar, Hatem A Abdel-Aziz.   

Abstract

In the title compound, C(20)H(19)N(3)OS, the central benzene ring makes dihedral angles of 45.36 (9) and 55.33 (9)° with the thio-phene ring and the dimethyl-substituted benzene ring, respectively. The dihedral angle between the thio-phene ring and dimethyl-substituted benzene ring is 83.60 (9)°. The thio-phene ring and the benzene ring are twisted from the mean plane of the C(=O)-N-N=C bridge [maximum deviation = 0.0860 (13) Å], with dihedral angles of 23.86 (9) and 24.77 (8)°, respectively. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring. In the crystal, mol-ecules are linked by N-H⋯O and C-H⋯O hydrogen bonds to the same acceptor atom, forming sheets lying parallel to the bc plane. The crystal packing also features C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22904960      PMCID: PMC3414973          DOI: 10.1107/S160053681203259X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry and biological activity of diaryl amines, see: Reddy et al. (2010 ▶). For related structures, see: Bhat et al. (2012a ▶,b ▶,c ▶); Wang et al. (2010 ▶); Tian et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H19N3OS M = 349.44 Monoclinic, a = 14.0922 (14) Å b = 15.9682 (15) Å c = 8.1338 (8) Å β = 105.344 (2)° V = 1765.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 100 K 0.34 × 0.07 × 0.04 mm

Data collection

Bruker APEX DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.936, T max = 0.992 14626 measured reflections 5082 independent reflections 3338 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.128 S = 1.01 5082 reflections 236 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681203259X/hb6898sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203259X/hb6898Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681203259X/hb6898Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19N3OSF(000) = 736
Mr = 349.44Dx = 1.315 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1664 reflections
a = 14.0922 (14) Åθ = 2.9–24.3°
b = 15.9682 (15) ŵ = 0.20 mm1
c = 8.1338 (8) ÅT = 100 K
β = 105.344 (2)°Needle, yellow
V = 1765.1 (3) Å30.34 × 0.07 × 0.04 mm
Z = 4
Bruker APEX DUO CCD diffractometer5082 independent reflections
Radiation source: fine-focus sealed tube3338 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.067
φ and ω scansθmax = 30.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→19
Tmin = 0.936, Tmax = 0.992k = −18→22
14626 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0527P)2] where P = (Fo2 + 2Fc2)/3
5082 reflections(Δ/σ)max < 0.001
236 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.35 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.10235 (4)0.29345 (3)0.79119 (6)0.02004 (13)
O10.44269 (10)0.16844 (8)0.95045 (15)0.0164 (3)
N10.63024 (13)0.11358 (11)1.0630 (2)0.0221 (4)
N20.38625 (12)0.23505 (10)1.1518 (2)0.0152 (3)
N30.30320 (11)0.26223 (9)1.03158 (19)0.0152 (3)
C10.72104 (15)−0.01298 (12)1.0366 (2)0.0219 (4)
H1A0.6781−0.04431.08540.026*
C20.79626 (16)−0.05289 (12)0.9882 (3)0.0225 (4)
H2A0.8060−0.11141.00560.027*
C30.85748 (15)−0.00697 (12)0.9138 (2)0.0209 (4)
H3A0.9097−0.03440.88170.025*
C40.84361 (14)0.07824 (12)0.8855 (2)0.0173 (4)
C50.76785 (14)0.12003 (11)0.9365 (2)0.0164 (4)
C60.70796 (14)0.07299 (12)1.0141 (2)0.0171 (4)
C70.60869 (14)0.10490 (11)1.2183 (2)0.0170 (4)
C80.67460 (15)0.06586 (12)1.3575 (2)0.0203 (4)
H8A0.73490.04431.34420.024*
C90.65339 (16)0.05829 (12)1.5130 (3)0.0239 (4)
H9A0.69890.03101.60440.029*
C100.56674 (16)0.08987 (12)1.5376 (2)0.0233 (4)
H10A0.55230.08411.64470.028*
C110.50153 (15)0.13000 (11)1.4038 (2)0.0188 (4)
H11A0.44200.15191.42030.023*
C120.52102 (14)0.13927 (11)1.2440 (2)0.0150 (4)
C130.44837 (13)0.18131 (11)1.1041 (2)0.0142 (4)
C140.25109 (14)0.31569 (11)1.0879 (2)0.0163 (4)
H14A0.27590.33911.19830.020*
C150.15535 (14)0.34032 (11)0.9847 (2)0.0156 (4)
C160.09047 (15)0.39305 (12)1.0313 (3)0.0207 (4)
H16A0.10610.42461.13400.025*
C17−0.00236 (15)0.39559 (13)0.9101 (3)0.0234 (4)
H17A−0.05600.42890.92220.028*
C18−0.00604 (15)0.34505 (12)0.7747 (3)0.0227 (4)
H18A−0.06250.33900.68110.027*
C190.90953 (17)0.12491 (14)0.7978 (3)0.0294 (5)
H19A0.95860.08630.77480.044*
H19B0.94300.17040.87160.044*
H19C0.86980.14830.69010.044*
C200.75020 (17)0.21221 (12)0.9033 (3)0.0241 (4)
H20A0.71770.23550.98570.036*
H20B0.70810.22050.78750.036*
H20C0.81330.24070.91490.036*
H1N20.3987 (16)0.2551 (13)1.257 (3)0.024 (6)*
H1N10.5850 (19)0.1361 (15)0.985 (3)0.035 (7)*
U11U22U33U12U13U23
S10.0187 (3)0.0212 (2)0.0189 (2)0.0013 (2)0.00243 (18)−0.00158 (19)
O10.0181 (7)0.0193 (6)0.0122 (6)0.0016 (5)0.0045 (5)−0.0001 (5)
N10.0172 (9)0.0300 (9)0.0203 (9)0.0093 (7)0.0073 (7)0.0073 (7)
N20.0136 (8)0.0194 (8)0.0116 (7)0.0030 (6)0.0013 (6)−0.0016 (6)
N30.0127 (8)0.0180 (7)0.0134 (7)0.0012 (6)0.0008 (6)0.0013 (6)
C10.0206 (10)0.0214 (10)0.0231 (10)−0.0019 (8)0.0047 (8)0.0026 (8)
C20.0260 (11)0.0164 (9)0.0239 (10)0.0038 (8)0.0046 (9)0.0002 (8)
C30.0191 (10)0.0230 (10)0.0201 (10)0.0064 (8)0.0044 (8)−0.0023 (8)
C40.0163 (10)0.0212 (9)0.0141 (9)−0.0002 (7)0.0036 (7)−0.0004 (7)
C50.0172 (10)0.0169 (9)0.0128 (9)0.0003 (7)−0.0001 (7)−0.0004 (7)
C60.0136 (9)0.0208 (9)0.0163 (9)0.0013 (7)0.0029 (7)−0.0004 (7)
C70.0164 (9)0.0165 (9)0.0174 (9)0.0001 (7)0.0036 (7)−0.0006 (7)
C80.0159 (10)0.0215 (9)0.0203 (10)0.0031 (8)−0.0012 (8)0.0011 (8)
C90.0267 (11)0.0222 (10)0.0171 (10)0.0029 (9)−0.0042 (8)0.0003 (8)
C100.0319 (12)0.0239 (10)0.0126 (9)0.0030 (9)0.0030 (8)0.0005 (8)
C110.0201 (10)0.0188 (9)0.0174 (9)0.0025 (8)0.0050 (8)−0.0007 (7)
C120.0142 (9)0.0157 (8)0.0143 (9)−0.0016 (7)0.0025 (7)−0.0005 (7)
C130.0127 (9)0.0142 (8)0.0160 (9)−0.0022 (7)0.0042 (7)−0.0002 (7)
C140.0171 (10)0.0170 (9)0.0141 (9)−0.0004 (7)0.0029 (7)−0.0003 (7)
C150.0151 (9)0.0169 (9)0.0155 (9)0.0003 (7)0.0053 (7)0.0029 (7)
C160.0209 (10)0.0226 (10)0.0195 (10)0.0042 (8)0.0068 (8)−0.0013 (8)
C170.0177 (10)0.0257 (10)0.0280 (11)0.0076 (8)0.0083 (8)0.0073 (9)
C180.0151 (10)0.0250 (10)0.0253 (11)−0.0001 (8)0.0009 (8)0.0060 (8)
C190.0262 (12)0.0360 (12)0.0306 (12)0.0019 (10)0.0156 (10)0.0064 (9)
C200.0335 (12)0.0182 (9)0.0225 (10)0.0016 (9)0.0107 (9)0.0003 (8)
S1—C181.709 (2)C8—C91.380 (3)
S1—C151.7243 (19)C8—H8A0.9500
O1—C131.248 (2)C9—C101.384 (3)
N1—C71.382 (2)C9—H9A0.9500
N1—C61.417 (2)C10—C111.382 (3)
N1—H1N10.85 (3)C10—H10A0.9500
N2—C131.354 (2)C11—C121.406 (3)
N2—N31.382 (2)C11—H11A0.9500
N2—H1N20.89 (2)C12—C131.475 (3)
N3—C141.287 (2)C14—C151.442 (3)
C1—C21.381 (3)C14—H14A0.9500
C1—C61.391 (3)C15—C161.368 (3)
C1—H1A0.9500C16—C171.415 (3)
C2—C31.387 (3)C16—H16A0.9500
C2—H2A0.9500C17—C181.355 (3)
C3—C41.385 (3)C17—H17A0.9500
C3—H3A0.9500C18—H18A0.9500
C4—C51.411 (3)C19—H19A0.9800
C4—C191.510 (3)C19—H19B0.9800
C5—C61.399 (3)C19—H19C0.9800
C5—C201.505 (3)C20—H20A0.9800
C7—C81.406 (3)C20—H20B0.9800
C7—C121.417 (3)C20—H20C0.9800
C18—S1—C1591.42 (10)C9—C10—H10A120.5
C7—N1—C6125.71 (17)C10—C11—C12121.68 (18)
C7—N1—H1N1115.0 (17)C10—C11—H11A119.2
C6—N1—H1N1117.7 (16)C12—C11—H11A119.2
C13—N2—N3119.15 (15)C11—C12—C7119.14 (17)
C13—N2—H1N2121.9 (15)C11—C12—C13119.70 (17)
N3—N2—H1N2118.9 (15)C7—C12—C13121.12 (16)
C14—N3—N2114.37 (15)O1—C13—N2121.08 (17)
C2—C1—C6120.20 (18)O1—C13—C12123.01 (16)
C2—C1—H1A119.9N2—C13—C12115.90 (15)
C6—C1—H1A119.9N3—C14—C15120.51 (17)
C1—C2—C3119.58 (18)N3—C14—H14A119.7
C1—C2—H2A120.2C15—C14—H14A119.7
C3—C2—H2A120.2C16—C15—C14126.67 (17)
C4—C3—C2120.99 (19)C16—C15—S1111.12 (15)
C4—C3—H3A119.5C14—C15—S1121.70 (14)
C2—C3—H3A119.5C15—C16—C17112.75 (18)
C3—C4—C5120.02 (17)C15—C16—H16A123.6
C3—C4—C19119.07 (18)C17—C16—H16A123.6
C5—C4—C19120.90 (17)C18—C17—C16112.26 (18)
C6—C5—C4118.19 (17)C18—C17—H17A123.9
C6—C5—C20121.03 (17)C16—C17—H17A123.9
C4—C5—C20120.76 (17)C17—C18—S1112.46 (16)
C1—C6—C5120.97 (18)C17—C18—H18A123.8
C1—C6—N1119.99 (17)S1—C18—H18A123.8
C5—C6—N1118.97 (17)C4—C19—H19A109.5
N1—C7—C8121.51 (18)C4—C19—H19B109.5
N1—C7—C12120.46 (17)H19A—C19—H19B109.5
C8—C7—C12117.96 (17)C4—C19—H19C109.5
C9—C8—C7121.33 (19)H19A—C19—H19C109.5
C9—C8—H8A119.3H19B—C19—H19C109.5
C7—C8—H8A119.3C5—C20—H20A109.5
C8—C9—C10120.95 (18)C5—C20—H20B109.5
C8—C9—H9A119.5H20A—C20—H20B109.5
C10—C9—H9A119.5C5—C20—H20C109.5
C11—C10—C9118.90 (18)H20A—C20—H20C109.5
C11—C10—H10A120.5H20B—C20—H20C109.5
C13—N2—N3—C14−177.33 (16)C9—C10—C11—C120.1 (3)
C6—C1—C2—C3−1.3 (3)C10—C11—C12—C71.5 (3)
C1—C2—C3—C4−0.7 (3)C10—C11—C12—C13178.95 (17)
C2—C3—C4—C51.6 (3)N1—C7—C12—C11−179.49 (18)
C2—C3—C4—C19−177.56 (18)C8—C7—C12—C11−2.7 (3)
C3—C4—C5—C6−0.4 (3)N1—C7—C12—C133.1 (3)
C19—C4—C5—C6178.70 (18)C8—C7—C12—C13179.91 (17)
C3—C4—C5—C20−178.59 (18)N3—N2—C13—O113.8 (3)
C19—C4—C5—C200.6 (3)N3—N2—C13—C12−165.63 (15)
C2—C1—C6—C52.5 (3)C11—C12—C13—O1−155.40 (18)
C2—C1—C6—N1179.59 (18)C7—C12—C13—O122.0 (3)
C4—C5—C6—C1−1.6 (3)C11—C12—C13—N224.0 (2)
C20—C5—C6—C1176.56 (18)C7—C12—C13—N2−158.62 (17)
C4—C5—C6—N1−178.73 (17)N2—N3—C14—C15−170.89 (16)
C20—C5—C6—N1−0.6 (3)N3—C14—C15—C16176.61 (19)
C7—N1—C6—C149.4 (3)N3—C14—C15—S15.5 (3)
C7—N1—C6—C5−133.4 (2)C18—S1—C15—C160.06 (15)
C6—N1—C7—C812.2 (3)C18—S1—C15—C14172.39 (16)
C6—N1—C7—C12−171.05 (18)C14—C15—C16—C17−171.90 (18)
N1—C7—C8—C9179.14 (19)S1—C15—C16—C170.0 (2)
C12—C7—C8—C92.4 (3)C15—C16—C17—C180.0 (3)
C7—C8—C9—C10−0.8 (3)C16—C17—C18—S10.1 (2)
C8—C9—C10—C11−0.5 (3)C15—S1—C18—C17−0.07 (16)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.89 (2)1.96 (2)2.808 (2)160 (2)
N1—H1N1···O10.85 (2)2.02 (3)2.704 (2)137 (2)
C1—H1A···O1ii0.952.583.410 (2)146
C3—H3A···Cg1iii0.952.983.732 (2)137
C9—H9A···Cg2iv0.952.843.649 (2)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the S1/C15–C18 and C1–C6 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯O1i 0.89 (2)1.96 (2)2.808 (2)160 (2)
N1—H1N1⋯O10.85 (2)2.02 (3)2.704 (2)137 (2)
C1—H1A⋯O1ii 0.952.583.410 (2)146
C3—H3ACg1iii 0.952.983.732 (2)137
C9—H9ACg2iv 0.952.843.649 (2)144

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-2-(2,3-Dimethyl-anilino)-N'-[2-methyl-5-(prop-1-en-2-yl)cyclo-hex-2-enyl-idene]benzohydrazide.

Authors:  Mashooq A Bhat; Hatem A Abdel-Aziz; Hazem A Ghabbour; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-21

3.  4-(o-Tolyl-amino)-benzaldehyde.

Authors:  Li-Ying Wang; Yong-Sheng Xie; Ren-Min Wu; Hua Zuo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

4.  4-(p-Tolyl-amino)-benzaldehyde.

Authors:  Xiao Tian; Yong-Sheng Xie; Hua Zuo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

5.  N'-[(1E,2E)-3,7-Dimethyl-octa-2,6-dien-1-yl-idene]pyridine-4-carbohydrazide.

Authors:  Mashooq A Bhat; Hatem A Abdel-Aziz; Hazem A Ghabbour; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-24

6.  (E)-N'-(4-Isopropyl-benzyl-idene)isonicotinohydrazide monohydrate.

Authors:  Mashooq A Bhat; Hatem A Abdel-Aziz; Hazem A Ghabbour; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  1 in total

1.  Crystal structures of two hydrazide derivatives of mefenamic acid, 3-(2,3-di-methyl-anilino)-N'-[(E)-(furan-2-yl)methyl-idene]benzohydrazide and N'-[(E)-benzyl-idene]-2-(2,3-di-methyl-anilino)benzo-hydrazide.

Authors:  Shaaban K Mohamed; Joel T Mague; Mehmet Akkurt; Mustafa R Albayati; Sahar M I Elgarhy; Elham A Al-Taifi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-12
  1 in total

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