Literature DB >> 22589878

(E)-N'-(4-Isopropyl-benzyl-idene)isonicotinohydrazide monohydrate.

Mashooq A Bhat, Hatem A Abdel-Aziz, Hazem A Ghabbour, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound, C(16)H(17)N(3)O·H(2)O, the isonicotinohydrazide mol-ecule adopts an E conformation about the central C=N double bond. The dihedral angle between the pyridine and the benzene rings is 54.56 (15)°. In the crystal, mol-ecules are connected via N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22589878      PMCID: PMC3343969          DOI: 10.1107/S1600536812009099

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and the biological activity of isoniazide, see: Bloom & Murray (1992 ▶); Loenhout-Rooyackers & Veen (1998 ▶); Hearn et al. (2009 ▶); Tripathi et al. (2011 ▶).

Experimental

Crystal data

C16H17N3O·H2O M = 285.34 Orthorhombic, a = 7.7503 (2) Å b = 11.7894 (3) Å c = 17.2820 (4) Å V = 1579.08 (7) Å3 Z = 4 Cu Kα radiation μ = 0.65 mm−1 T = 296 K 0.89 × 0.19 × 0.13 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.594, T max = 0.920 6473 measured reflections 2939 independent reflections 2499 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.145 S = 1.04 2939 reflections 193 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009099/cv5248sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009099/cv5248Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009099/cv5248Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17N3O·H2OF(000) = 608
Mr = 285.34Dx = 1.200 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 1751 reflections
a = 7.7503 (2) Åθ = 4.5–65.6°
b = 11.7894 (3) ŵ = 0.65 mm1
c = 17.2820 (4) ÅT = 296 K
V = 1579.08 (7) Å3Block, colourless
Z = 40.89 × 0.19 × 0.13 mm
Bruker SMART APEXII CCD area-detector diffractometer2939 independent reflections
Radiation source: fine-focus sealed tube2499 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
φ and ω scansθmax = 71.8°, θmin = 4.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→8
Tmin = 0.594, Tmax = 0.920k = −13→10
6473 measured reflectionsl = −20→21
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.049w = 1/[σ2(Fo2) + (0.0715P)2 + 0.3351P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.145(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.22 e Å3
2939 reflectionsΔρmin = −0.28 e Å3
193 parametersExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0045 (8)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack, H. D. (1983). Acta Cryst. A39, 876–881, 1072 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.8 (4)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.1044 (3)−0.05606 (15)0.18186 (11)0.0761 (6)
N11.1036 (4)0.1562 (2)−0.06565 (14)0.0839 (8)
H1N10.97180.18170.20930.101*
N21.0132 (3)0.11714 (17)0.22203 (11)0.0573 (5)
N31.0056 (3)0.08469 (18)0.29864 (11)0.0578 (5)
C11.1390 (4)0.1925 (2)0.06922 (16)0.0666 (7)
H1A1.17420.24200.10800.080*
C21.1526 (5)0.2221 (3)−0.00740 (18)0.0785 (9)
H2A1.19900.2927−0.01920.094*
C31.0378 (5)0.0560 (3)−0.04701 (17)0.0835 (9)
H3A1.00120.0089−0.08690.100*
C41.0204 (4)0.0177 (2)0.02743 (15)0.0670 (7)
H4A0.9750−0.05380.03740.080*
C51.0715 (3)0.0872 (2)0.08717 (13)0.0536 (5)
C61.0648 (3)0.0424 (2)0.16813 (14)0.0555 (6)
C70.9297 (3)0.1536 (2)0.34324 (14)0.0571 (6)
H7A0.88110.21850.32170.069*
C80.9143 (3)0.1369 (2)0.42615 (13)0.0515 (5)
C90.9887 (4)0.0448 (2)0.46475 (15)0.0604 (6)
H9A1.0450−0.01130.43660.072*
C100.9792 (4)0.0366 (2)0.54362 (15)0.0689 (7)
H10A1.0299−0.02530.56800.083*
C110.8961 (4)0.1178 (2)0.58831 (15)0.0692 (7)
C120.8237 (4)0.2085 (3)0.54993 (16)0.0699 (7)
H12A0.76840.26490.57830.084*
C130.8312 (4)0.2176 (2)0.47065 (15)0.0611 (6)
H13A0.77930.27920.44650.073*
C140.8851 (9)0.1105 (4)0.67642 (19)0.1318 (19)
H14A0.75990.11510.68360.158*
C150.9192 (7)−0.0015 (4)0.7099 (2)0.1196 (15)
H15A0.8882−0.00110.76370.179*
H15B1.0396−0.01900.70480.179*
H15C0.8521−0.05760.68320.179*
C160.9387 (9)0.2120 (5)0.7158 (2)0.149 (2)
H16A0.89250.21210.76740.223*
H16B0.89680.27710.68830.223*
H16C1.06240.21450.71810.223*
O1W0.8651 (3)0.32125 (15)0.18150 (11)0.0822 (7)
H1W10.77480.32090.15310.123*
H2W10.88030.37540.21270.123*
U11U22U33U12U13U23
O10.1132 (16)0.0556 (10)0.0594 (10)0.0199 (10)0.0095 (11)0.0108 (9)
N10.114 (2)0.0893 (18)0.0484 (12)0.0015 (16)0.0134 (14)0.0090 (12)
N20.0738 (13)0.0546 (12)0.0436 (10)0.0047 (10)0.0017 (9)0.0057 (8)
N30.0726 (13)0.0566 (12)0.0443 (10)0.0010 (10)−0.0025 (9)0.0063 (9)
C10.0849 (17)0.0594 (15)0.0555 (14)−0.0062 (13)0.0094 (13)−0.0003 (12)
C20.107 (2)0.0670 (18)0.0617 (17)−0.0041 (16)0.0213 (16)0.0106 (14)
C30.113 (3)0.086 (2)0.0525 (15)−0.0043 (19)−0.0001 (16)−0.0066 (14)
C40.0819 (18)0.0642 (16)0.0547 (14)−0.0060 (14)0.0020 (13)0.0000 (12)
C50.0623 (13)0.0537 (13)0.0448 (11)0.0029 (11)0.0079 (10)0.0043 (10)
C60.0638 (13)0.0541 (14)0.0486 (12)0.0022 (11)0.0030 (11)0.0030 (10)
C70.0697 (14)0.0512 (13)0.0504 (13)0.0021 (12)−0.0057 (11)0.0055 (10)
C80.0559 (11)0.0526 (13)0.0462 (11)0.0002 (10)−0.0027 (10)0.0009 (9)
C90.0750 (16)0.0530 (13)0.0531 (13)0.0117 (12)0.0005 (12)0.0027 (10)
C100.0871 (19)0.0657 (16)0.0538 (14)0.0139 (14)−0.0047 (13)0.0083 (12)
C110.0913 (19)0.0708 (17)0.0455 (13)0.0007 (15)0.0039 (13)−0.0005 (12)
C120.0798 (18)0.0674 (16)0.0624 (16)0.0095 (14)0.0115 (13)−0.0081 (14)
C130.0659 (15)0.0567 (14)0.0607 (14)0.0118 (12)−0.0004 (12)0.0022 (11)
C140.238 (6)0.108 (3)0.0494 (18)0.018 (4)0.006 (3)0.0001 (19)
C150.149 (4)0.149 (4)0.0615 (19)−0.022 (3)0.008 (2)0.034 (2)
C160.204 (5)0.180 (5)0.062 (2)−0.002 (5)−0.027 (3)−0.026 (3)
O1W0.1251 (18)0.0586 (11)0.0628 (11)0.0163 (11)−0.0286 (12)−0.0119 (9)
O1—C61.224 (3)C9—C101.368 (3)
N1—C31.326 (4)C9—H9A0.9300
N1—C21.327 (4)C10—C111.389 (4)
N2—C61.343 (3)C10—H10A0.9300
N2—N31.379 (3)C11—C121.377 (4)
N2—H1N10.8550C11—C141.528 (4)
N3—C71.266 (3)C12—C131.376 (4)
C1—C21.373 (4)C12—H12A0.9300
C1—C51.383 (4)C13—H13A0.9300
C1—H1A0.9300C14—C161.438 (6)
C2—H2A0.9300C14—C151.465 (6)
C3—C41.370 (4)C14—H14A0.9800
C3—H3A0.9300C15—H15A0.9600
C4—C51.376 (4)C15—H15B0.9600
C4—H4A0.9300C15—H15C0.9600
C5—C61.496 (3)C16—H16A0.9600
C7—C81.451 (3)C16—H16B0.9600
C7—H7A0.9300C16—H16C0.9600
C8—C131.382 (3)O1W—H1W10.8541
C8—C91.398 (3)O1W—H2W10.8437
C3—N1—C2116.6 (3)C9—C10—C11122.0 (3)
C6—N2—N3119.78 (19)C9—C10—H10A119.0
C6—N2—H1N1121.2C11—C10—H10A119.0
N3—N2—H1N1118.5C12—C11—C10117.1 (2)
C7—N3—N2115.2 (2)C12—C11—C14120.1 (3)
C2—C1—C5118.3 (3)C10—C11—C14122.7 (3)
C2—C1—H1A120.9C13—C12—C11121.5 (3)
C5—C1—H1A120.9C13—C12—H12A119.2
N1—C2—C1124.1 (3)C11—C12—H12A119.2
N1—C2—H2A117.9C12—C13—C8121.4 (3)
C1—C2—H2A117.9C12—C13—H13A119.3
N1—C3—C4124.0 (3)C8—C13—H13A119.3
N1—C3—H3A118.0C16—C14—C15120.7 (4)
C4—C3—H3A118.0C16—C14—C11114.1 (4)
C3—C4—C5118.7 (3)C15—C14—C11115.8 (3)
C3—C4—H4A120.7C16—C14—H14A100.3
C5—C4—H4A120.7C15—C14—H14A100.3
C4—C5—C1118.4 (2)C11—C14—H14A100.3
C4—C5—C6118.8 (2)C14—C15—H15A109.5
C1—C5—C6122.6 (2)C14—C15—H15B109.5
O1—C6—N2124.2 (2)H15A—C15—H15B109.5
O1—C6—C5120.5 (2)C14—C15—H15C109.5
N2—C6—C5115.3 (2)H15A—C15—H15C109.5
N3—C7—C8123.5 (2)H15B—C15—H15C109.5
N3—C7—H7A118.2C14—C16—H16A109.5
C8—C7—H7A118.2C14—C16—H16B109.5
C13—C8—C9117.4 (2)H16A—C16—H16B109.5
C13—C8—C7119.6 (2)C14—C16—H16C109.5
C9—C8—C7122.9 (2)H16A—C16—H16C109.5
C10—C9—C8120.5 (2)H16B—C16—H16C109.5
C10—C9—H9A119.7H1W1—O1W—H2W1119.0
C8—C9—H9A119.7
C6—N2—N3—C7−169.0 (3)N3—C7—C8—C13179.0 (3)
C3—N1—C2—C10.0 (5)N3—C7—C8—C92.7 (4)
C5—C1—C2—N10.6 (5)C13—C8—C9—C10−0.3 (4)
C2—N1—C3—C4−0.9 (5)C7—C8—C9—C10176.0 (3)
N1—C3—C4—C51.0 (5)C8—C9—C10—C110.2 (5)
C3—C4—C5—C1−0.3 (4)C9—C10—C11—C12−0.4 (5)
C3—C4—C5—C6−175.6 (3)C9—C10—C11—C14−179.6 (4)
C2—C1—C5—C4−0.4 (4)C10—C11—C12—C130.8 (5)
C2—C1—C5—C6174.7 (3)C14—C11—C12—C13−179.9 (4)
N3—N2—C6—O11.3 (4)C11—C12—C13—C8−1.1 (5)
N3—N2—C6—C5−178.9 (2)C9—C8—C13—C120.8 (4)
C4—C5—C6—O138.5 (4)C7—C8—C13—C12−175.7 (3)
C1—C5—C6—O1−136.6 (3)C12—C11—C14—C16−50.3 (7)
C4—C5—C6—N2−141.4 (3)C10—C11—C14—C16128.9 (5)
C1—C5—C6—N243.6 (4)C12—C11—C14—C15162.9 (4)
N2—N3—C7—C8−177.5 (2)C10—C11—C14—C15−17.9 (7)
D—H···AD—HH···AD···AD—H···A
N2—H1N1···O1W0.851.902.757 (3)176
O1W—H1W1···N1i0.852.032.861 (3)164
O1W—H2W1···O1ii0.842.002.779 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N1⋯O1W0.851.902.757 (3)176
O1W—H1W1⋯N1i0.852.032.861 (3)164
O1W—H2W1⋯O1ii0.842.002.779 (3)154

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Laxmi Tripathi; Ranjit Singh; James P Stables
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3.  Treatment of pulmonary tuberculosis.

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Review 4.  Tuberculosis: commentary on a reemergent killer.

Authors:  B R Bloom; C J Murray
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5.  Preparation and antitubercular activities in vitro and in vivo of novel Schiff bases of isoniazid.

Authors:  Michael J Hearn; Michael H Cynamon; Michaeline F Chen; Rebecca Coppins; Jessica Davis; Helen Joo-On Kang; Abigail Noble; Becky Tu-Sekine; Marianne S Terrot; Daniella Trombino; Minh Thai; Eleanor R Webster; Rebecca Wilson
Journal:  Eur J Med Chem       Date:  2009-05-21       Impact factor: 6.514

6.  Structure validation in chemical crystallography.

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1.  (E)-2-(2,3-Dimethyl-anilino)-N'-(thio-phen-2-yl-methyl-idene)benzohydrazide.

Authors:  Hoong-Kun Fun; Tze Shyang Chia; Mashooq A Bhat; Mohamed A Al-Omar; Hatem A Abdel-Aziz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-25
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