Literature DB >> 22904917

2-[(2-Hy-droxy-benz-yl)amino]-pyrazinium perchlorate-2-[(pyrazin-2-yl-amino)-meth-yl]phenol (1/1).

Shan Gao, Seik Weng Ng.   

Abstract

In the crystal structure of the title co-crystal, C(11)H(12)N(3)O(+)·ClO(4) (-)·C(11)H(11)N(3)O, the perchlorate ion is disordered about a twofold rotation axis with the Cl atom located on the twofold rotation axis; the 2-[(2-hy-droxy-benz-yl)amino]-pyrazinium cation and the neutral 2-[(pyrazin-2-yl-amino)-meth-yl]phenol mol-ecule are disordered about the rotation axis in a 1:1 ratio. These two are connected by a pyrazine-pyrazine N(1)-H⋯N(4) hydrogen bond. The cation, whose two aromatic rings are twisted along the -CH(2)-NH- bond by 76.8 (1)°, is a hydrogen-bond donor to the perchlorate ion through the N atom of this link.

Entities:  

Year:  2012        PMID: 22904917      PMCID: PMC3414930          DOI: 10.1107/S1600536812031558

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 2-{[(pyrazin-2-yl)amino]­meth­yl}phenol, see: Gao & Ng (2012 ▶).

Experimental

Crystal data

C11H12N3O+·ClO4 −·C11H11N3O M = 502.91 Monoclinic, a = 19.3402 (14) Å b = 5.9467 (3) Å c = 11.1761 (9) Å β = 116.263 (10)° V = 1152.68 (16) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 295 K 0.24 × 0.21 × 0.18 mm

Data collection

Agilent Technologies Excalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.950, T max = 0.962 4085 measured reflections 2272 independent reflections 1859 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.116 S = 1.02 2272 reflections 188 parameters 49 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), 970 Friedel pairs Flack parameter: 0.08 (12) Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812031558/xu5583sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031558/xu5583Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812031558/xu5583Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N3O+·ClO4·C11H11N3OF(000) = 524
Mr = 502.91Dx = 1.449 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 1220 reflections
a = 19.3402 (14) Åθ = 3.6–26.3°
b = 5.9467 (3) ŵ = 0.22 mm1
c = 11.1761 (9) ÅT = 295 K
β = 116.263 (10)°Prism, faint yellow
V = 1152.68 (16) Å30.24 × 0.21 × 0.18 mm
Z = 2
Agilent Technologies Excalibur Eos diffractometer2272 independent reflections
Radiation source: Enhance (Mo) X-ray Source1859 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
Detector resolution: 16.1954 pixels mm-1θmax = 26.4°, θmin = 3.6°
ω scanh = −24→18
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −7→6
Tmin = 0.950, Tmax = 0.962l = −13→13
4085 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.0572P)2 + 0.4309P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2272 reflectionsΔρmax = 0.25 e Å3
188 parametersΔρmin = −0.29 e Å3
49 restraintsAbsolute structure: Flack (1983), 970 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.08 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Cl10.50000.4267 (2)0.50000.0579 (4)
O10.69568 (12)0.7165 (4)0.1561 (3)0.0532 (6)
H10.7398 (12)0.706 (9)0.160 (4)0.096 (16)*
O20.4621 (4)0.4483 (13)0.3574 (4)0.097 (2)0.50
O30.5616 (4)0.5734 (14)0.5459 (9)0.157 (4)0.50
O40.5237 (5)0.2039 (9)0.5269 (9)0.139 (4)0.50
O50.4483 (5)0.4823 (15)0.5488 (10)0.133 (4)0.50
N10.33389 (14)1.1417 (5)0.1364 (3)0.0477 (7)
N20.45243 (14)1.0855 (4)0.0644 (2)0.0356 (6)
H20.489 (3)1.095 (11)0.037 (6)0.043*0.50
N30.50166 (16)0.7989 (5)0.2224 (3)0.0521 (8)
H30.493 (2)0.719 (7)0.280 (3)0.077 (13)*
C10.44928 (15)0.9564 (5)0.1601 (3)0.0364 (7)
C20.38666 (17)0.9909 (6)0.1934 (3)0.0463 (8)
H2A0.38370.90080.25900.056*
C30.34042 (18)1.2745 (6)0.0433 (3)0.0494 (9)
H3A0.30461.38850.00350.059*
C40.39772 (16)1.2451 (6)0.0069 (3)0.0432 (8)
H40.39961.3364−0.05920.052*
C60.56937 (16)0.7511 (6)0.2008 (3)0.0437 (7)
H6A0.55340.74230.10550.052*
H6B0.58960.60490.23870.052*
C70.63300 (16)0.9214 (6)0.2598 (3)0.0373 (6)
C80.69713 (16)0.8951 (6)0.2350 (3)0.0402 (7)
C90.75839 (19)1.0441 (6)0.2873 (3)0.0487 (8)
H90.80111.02320.27100.058*
C100.7561 (2)1.2220 (7)0.3631 (3)0.0577 (9)
H100.79691.32330.39730.069*
C110.6936 (2)1.2508 (7)0.3886 (3)0.0602 (10)
H110.69231.37150.44040.072*
C120.6323 (2)1.1010 (6)0.3376 (3)0.0497 (9)
H120.59031.12190.35600.060*
U11U22U33U12U13U23
Cl10.0570 (7)0.0717 (9)0.0516 (7)0.0000.0300 (6)0.000
O10.0385 (12)0.0598 (15)0.0739 (16)0.0029 (12)0.0364 (12)−0.0173 (13)
O20.129 (5)0.104 (5)0.049 (3)−0.032 (5)0.030 (3)0.005 (4)
O30.070 (4)0.208 (9)0.164 (8)−0.059 (5)0.024 (5)−0.032 (7)
O40.186 (10)0.093 (5)0.134 (8)0.077 (6)0.068 (7)0.035 (5)
O50.149 (7)0.155 (7)0.158 (7)−0.022 (6)0.126 (6)−0.036 (6)
N10.0338 (13)0.0600 (18)0.0561 (16)0.0066 (13)0.0261 (13)−0.0047 (15)
N20.0327 (13)0.0398 (14)0.0403 (13)0.0037 (11)0.0216 (11)0.0041 (11)
N30.0438 (15)0.0585 (19)0.071 (2)0.0188 (14)0.0405 (15)0.0297 (16)
C10.0305 (14)0.0414 (16)0.0445 (16)0.0024 (14)0.0231 (12)0.0018 (15)
C20.0391 (17)0.058 (2)0.056 (2)0.0027 (16)0.0337 (15)0.0047 (16)
C30.0413 (17)0.056 (2)0.0513 (19)0.0182 (17)0.0210 (15)0.0041 (17)
C40.0421 (16)0.0475 (18)0.0392 (16)0.0081 (16)0.0172 (14)0.0095 (15)
C60.0374 (15)0.0441 (18)0.0576 (19)0.0147 (15)0.0283 (14)0.0126 (16)
C70.0371 (14)0.0404 (16)0.0362 (14)0.0121 (15)0.0179 (12)0.0082 (15)
C80.0353 (16)0.0486 (19)0.0389 (15)0.0111 (15)0.0184 (13)0.0056 (15)
C90.0408 (18)0.057 (2)0.0479 (19)0.0026 (15)0.0195 (16)0.0043 (16)
C100.053 (2)0.061 (2)0.047 (2)−0.0041 (19)0.0118 (17)0.0012 (19)
C110.072 (2)0.056 (2)0.0398 (18)0.014 (2)0.0133 (17)−0.0103 (16)
C120.053 (2)0.058 (2)0.0429 (18)0.0198 (18)0.0262 (16)0.0046 (16)
Cl1—O5i1.375 (6)C1—C21.431 (4)
Cl1—O51.375 (6)C2—H2A0.9300
Cl1—O31.380 (5)C3—C41.350 (5)
Cl1—O3i1.380 (5)C3—H3A0.9300
Cl1—O4i1.390 (5)C4—H40.9300
Cl1—O41.390 (5)C6—C71.503 (5)
Cl1—O2i1.435 (4)C6—H6A0.9700
Cl1—O21.435 (4)C6—H6B0.9700
O1—C81.373 (4)C7—C121.381 (4)
O1—H10.840 (11)C7—C81.394 (4)
N1—C21.295 (4)C8—C91.385 (4)
N1—C31.356 (4)C9—C101.369 (5)
N2—C11.339 (4)C9—H90.9300
N2—C41.353 (4)C10—C111.368 (5)
N2—H20.883 (11)C10—H100.9300
N3—C11.328 (4)C11—C121.388 (5)
N3—C61.461 (4)C11—H110.9300
N3—H30.877 (11)C12—H120.9300
O5—Cl1—O3111.1 (4)N2—C4—H4119.3
O5—Cl1—O4111.9 (5)N3—C6—C7114.6 (3)
O3—Cl1—O4111.9 (4)N3—C6—H6A108.6
O5—Cl1—O2108.4 (4)C7—C6—H6A108.6
O3—Cl1—O2106.8 (4)N3—C6—H6B108.6
O4—Cl1—O2106.4 (4)C7—C6—H6B108.6
C8—O1—H1107 (4)H6A—C6—H6B107.6
C2—N1—C3117.4 (3)C12—C7—C8118.0 (3)
C1—N2—C4118.6 (2)C12—C7—C6124.3 (3)
C1—N2—H2130 (4)C8—C7—C6117.7 (3)
C4—N2—H2111 (4)O1—C8—C9122.4 (3)
C1—N3—C6125.6 (3)O1—C8—C7116.6 (3)
C1—N3—H3115 (3)C9—C8—C7121.0 (3)
C6—N3—H3120 (3)C10—C9—C8120.0 (3)
N3—C1—N2121.9 (2)C10—C9—H9120.0
N3—C1—C2120.1 (3)C8—C9—H9120.0
N2—C1—C2117.9 (3)C11—C10—C9119.9 (4)
N1—C2—C1123.0 (3)C11—C10—H10120.0
N1—C2—H2A118.5C9—C10—H10120.0
C1—C2—H2A118.5C10—C11—C12120.5 (3)
C4—C3—N1121.6 (3)C10—C11—H11119.8
C4—C3—H3A119.2C12—C11—H11119.8
N1—C3—H3A119.2C7—C12—C11120.7 (3)
C3—C4—N2121.4 (3)C7—C12—H12119.7
C3—C4—H4119.3C11—C12—H12119.7
C6—N3—C1—N22.6 (5)N3—C6—C7—C8−175.6 (3)
C6—N3—C1—C2−178.1 (3)C12—C7—C8—O1−179.2 (3)
C4—N2—C1—N3−179.0 (3)C6—C7—C8—O11.2 (4)
C4—N2—C1—C21.7 (4)C12—C7—C8—C90.3 (4)
C3—N1—C2—C1−1.5 (5)C6—C7—C8—C9−179.3 (3)
N3—C1—C2—N1179.9 (3)O1—C8—C9—C10178.6 (3)
N2—C1—C2—N1−0.7 (5)C7—C8—C9—C10−0.9 (5)
C2—N1—C3—C42.8 (5)C8—C9—C10—C110.8 (5)
N1—C3—C4—N2−1.8 (5)C9—C10—C11—C12−0.2 (5)
C1—N2—C4—C3−0.5 (5)C8—C7—C12—C110.3 (5)
C1—N3—C6—C774.2 (4)C6—C7—C12—C11179.9 (3)
N3—C6—C7—C124.9 (4)C10—C11—C12—C7−0.4 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1ii0.84 (1)1.99 (2)2.813 (3)168 (5)
N2—H2···N2iii0.88 (1)1.93 (2)2.793 (5)166 (6)
N3—H3···O20.88 (1)2.04 (2)2.868 (7)158 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N1i 0.84 (1)1.99 (2)2.813 (3)168 (5)
N2—H2⋯N2ii 0.88 (1)1.93 (2)2.793 (5)166 (6)
N3—H3⋯O20.88 (1)2.04 (2)2.868 (7)158 (4)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-{[(Pyrazin-2-yl)amino]-meth-yl}phenol.

Authors:  Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18
  2 in total

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