| Literature DB >> 22904917 |
Abstract
In the crystal structure of the title co-crystal, C(11)H(12)N(3)O(+)·ClO(4) (-)·C(11)H(11)N(3)O, the perchlorate ion is disordered about a twofold rotation axis with the Cl atom located on the twofold rotation axis; the 2-[(2-hy-droxy-benz-yl)amino]-pyrazinium cation and the neutral 2-[(pyrazin-2-yl-amino)-meth-yl]phenol mol-ecule are disordered about the rotation axis in a 1:1 ratio. These two are connected by a pyrazine-pyrazine N(1)-H⋯N(4) hydrogen bond. The cation, whose two aromatic rings are twisted along the -CH(2)-NH- bond by 76.8 (1)°, is a hydrogen-bond donor to the perchlorate ion through the N atom of this link.Entities:
Year: 2012 PMID: 22904917 PMCID: PMC3414930 DOI: 10.1107/S1600536812031558
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H12N3O+·ClO4−·C11H11N3O | |
| Monoclinic, | Mo |
| Hall symbol: C 2y | Cell parameters from 1220 reflections |
| θ = 3.6–26.3° | |
| µ = 0.22 mm−1 | |
| β = 116.263 (10)° | Prism, faint yellow |
| 0.24 × 0.21 × 0.18 mm | |
| Agilent Technologies Excalibur Eos diffractometer | 2272 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1859 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.1954 pixels mm-1 | θmax = 26.4°, θmin = 3.6° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 4085 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2272 reflections | Δρmax = 0.25 e Å−3 |
| 188 parameters | Δρmin = −0.29 e Å−3 |
| 49 restraints | Absolute structure: Flack (1983), 970 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.08 (12) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Occ. (<1) | |||||
| Cl1 | 0.5000 | 0.4267 (2) | 0.5000 | 0.0579 (4) | |
| O1 | 0.69568 (12) | 0.7165 (4) | 0.1561 (3) | 0.0532 (6) | |
| H1 | 0.7398 (12) | 0.706 (9) | 0.160 (4) | 0.096 (16)* | |
| O2 | 0.4621 (4) | 0.4483 (13) | 0.3574 (4) | 0.097 (2) | 0.50 |
| O3 | 0.5616 (4) | 0.5734 (14) | 0.5459 (9) | 0.157 (4) | 0.50 |
| O4 | 0.5237 (5) | 0.2039 (9) | 0.5269 (9) | 0.139 (4) | 0.50 |
| O5 | 0.4483 (5) | 0.4823 (15) | 0.5488 (10) | 0.133 (4) | 0.50 |
| N1 | 0.33389 (14) | 1.1417 (5) | 0.1364 (3) | 0.0477 (7) | |
| N2 | 0.45243 (14) | 1.0855 (4) | 0.0644 (2) | 0.0356 (6) | |
| H2 | 0.489 (3) | 1.095 (11) | 0.037 (6) | 0.043* | 0.50 |
| N3 | 0.50166 (16) | 0.7989 (5) | 0.2224 (3) | 0.0521 (8) | |
| H3 | 0.493 (2) | 0.719 (7) | 0.280 (3) | 0.077 (13)* | |
| C1 | 0.44928 (15) | 0.9564 (5) | 0.1601 (3) | 0.0364 (7) | |
| C2 | 0.38666 (17) | 0.9909 (6) | 0.1934 (3) | 0.0463 (8) | |
| H2A | 0.3837 | 0.9008 | 0.2590 | 0.056* | |
| C3 | 0.34042 (18) | 1.2745 (6) | 0.0433 (3) | 0.0494 (9) | |
| H3A | 0.3046 | 1.3885 | 0.0035 | 0.059* | |
| C4 | 0.39772 (16) | 1.2451 (6) | 0.0069 (3) | 0.0432 (8) | |
| H4 | 0.3996 | 1.3364 | −0.0592 | 0.052* | |
| C6 | 0.56937 (16) | 0.7511 (6) | 0.2008 (3) | 0.0437 (7) | |
| H6A | 0.5534 | 0.7423 | 0.1055 | 0.052* | |
| H6B | 0.5896 | 0.6049 | 0.2387 | 0.052* | |
| C7 | 0.63300 (16) | 0.9214 (6) | 0.2598 (3) | 0.0373 (6) | |
| C8 | 0.69713 (16) | 0.8951 (6) | 0.2350 (3) | 0.0402 (7) | |
| C9 | 0.75839 (19) | 1.0441 (6) | 0.2873 (3) | 0.0487 (8) | |
| H9 | 0.8011 | 1.0232 | 0.2710 | 0.058* | |
| C10 | 0.7561 (2) | 1.2220 (7) | 0.3631 (3) | 0.0577 (9) | |
| H10 | 0.7969 | 1.3233 | 0.3973 | 0.069* | |
| C11 | 0.6936 (2) | 1.2508 (7) | 0.3886 (3) | 0.0602 (10) | |
| H11 | 0.6923 | 1.3715 | 0.4404 | 0.072* | |
| C12 | 0.6323 (2) | 1.1010 (6) | 0.3376 (3) | 0.0497 (9) | |
| H12 | 0.5903 | 1.1219 | 0.3560 | 0.060* |
| Cl1 | 0.0570 (7) | 0.0717 (9) | 0.0516 (7) | 0.000 | 0.0300 (6) | 0.000 |
| O1 | 0.0385 (12) | 0.0598 (15) | 0.0739 (16) | 0.0029 (12) | 0.0364 (12) | −0.0173 (13) |
| O2 | 0.129 (5) | 0.104 (5) | 0.049 (3) | −0.032 (5) | 0.030 (3) | 0.005 (4) |
| O3 | 0.070 (4) | 0.208 (9) | 0.164 (8) | −0.059 (5) | 0.024 (5) | −0.032 (7) |
| O4 | 0.186 (10) | 0.093 (5) | 0.134 (8) | 0.077 (6) | 0.068 (7) | 0.035 (5) |
| O5 | 0.149 (7) | 0.155 (7) | 0.158 (7) | −0.022 (6) | 0.126 (6) | −0.036 (6) |
| N1 | 0.0338 (13) | 0.0600 (18) | 0.0561 (16) | 0.0066 (13) | 0.0261 (13) | −0.0047 (15) |
| N2 | 0.0327 (13) | 0.0398 (14) | 0.0403 (13) | 0.0037 (11) | 0.0216 (11) | 0.0041 (11) |
| N3 | 0.0438 (15) | 0.0585 (19) | 0.071 (2) | 0.0188 (14) | 0.0405 (15) | 0.0297 (16) |
| C1 | 0.0305 (14) | 0.0414 (16) | 0.0445 (16) | 0.0024 (14) | 0.0231 (12) | 0.0018 (15) |
| C2 | 0.0391 (17) | 0.058 (2) | 0.056 (2) | 0.0027 (16) | 0.0337 (15) | 0.0047 (16) |
| C3 | 0.0413 (17) | 0.056 (2) | 0.0513 (19) | 0.0182 (17) | 0.0210 (15) | 0.0041 (17) |
| C4 | 0.0421 (16) | 0.0475 (18) | 0.0392 (16) | 0.0081 (16) | 0.0172 (14) | 0.0095 (15) |
| C6 | 0.0374 (15) | 0.0441 (18) | 0.0576 (19) | 0.0147 (15) | 0.0283 (14) | 0.0126 (16) |
| C7 | 0.0371 (14) | 0.0404 (16) | 0.0362 (14) | 0.0121 (15) | 0.0179 (12) | 0.0082 (15) |
| C8 | 0.0353 (16) | 0.0486 (19) | 0.0389 (15) | 0.0111 (15) | 0.0184 (13) | 0.0056 (15) |
| C9 | 0.0408 (18) | 0.057 (2) | 0.0479 (19) | 0.0026 (15) | 0.0195 (16) | 0.0043 (16) |
| C10 | 0.053 (2) | 0.061 (2) | 0.047 (2) | −0.0041 (19) | 0.0118 (17) | 0.0012 (19) |
| C11 | 0.072 (2) | 0.056 (2) | 0.0398 (18) | 0.014 (2) | 0.0133 (17) | −0.0103 (16) |
| C12 | 0.053 (2) | 0.058 (2) | 0.0429 (18) | 0.0198 (18) | 0.0262 (16) | 0.0046 (16) |
| Cl1—O5i | 1.375 (6) | C1—C2 | 1.431 (4) |
| Cl1—O5 | 1.375 (6) | C2—H2A | 0.9300 |
| Cl1—O3 | 1.380 (5) | C3—C4 | 1.350 (5) |
| Cl1—O3i | 1.380 (5) | C3—H3A | 0.9300 |
| Cl1—O4i | 1.390 (5) | C4—H4 | 0.9300 |
| Cl1—O4 | 1.390 (5) | C6—C7 | 1.503 (5) |
| Cl1—O2i | 1.435 (4) | C6—H6A | 0.9700 |
| Cl1—O2 | 1.435 (4) | C6—H6B | 0.9700 |
| O1—C8 | 1.373 (4) | C7—C12 | 1.381 (4) |
| O1—H1 | 0.840 (11) | C7—C8 | 1.394 (4) |
| N1—C2 | 1.295 (4) | C8—C9 | 1.385 (4) |
| N1—C3 | 1.356 (4) | C9—C10 | 1.369 (5) |
| N2—C1 | 1.339 (4) | C9—H9 | 0.9300 |
| N2—C4 | 1.353 (4) | C10—C11 | 1.368 (5) |
| N2—H2 | 0.883 (11) | C10—H10 | 0.9300 |
| N3—C1 | 1.328 (4) | C11—C12 | 1.388 (5) |
| N3—C6 | 1.461 (4) | C11—H11 | 0.9300 |
| N3—H3 | 0.877 (11) | C12—H12 | 0.9300 |
| O5—Cl1—O3 | 111.1 (4) | N2—C4—H4 | 119.3 |
| O5—Cl1—O4 | 111.9 (5) | N3—C6—C7 | 114.6 (3) |
| O3—Cl1—O4 | 111.9 (4) | N3—C6—H6A | 108.6 |
| O5—Cl1—O2 | 108.4 (4) | C7—C6—H6A | 108.6 |
| O3—Cl1—O2 | 106.8 (4) | N3—C6—H6B | 108.6 |
| O4—Cl1—O2 | 106.4 (4) | C7—C6—H6B | 108.6 |
| C8—O1—H1 | 107 (4) | H6A—C6—H6B | 107.6 |
| C2—N1—C3 | 117.4 (3) | C12—C7—C8 | 118.0 (3) |
| C1—N2—C4 | 118.6 (2) | C12—C7—C6 | 124.3 (3) |
| C1—N2—H2 | 130 (4) | C8—C7—C6 | 117.7 (3) |
| C4—N2—H2 | 111 (4) | O1—C8—C9 | 122.4 (3) |
| C1—N3—C6 | 125.6 (3) | O1—C8—C7 | 116.6 (3) |
| C1—N3—H3 | 115 (3) | C9—C8—C7 | 121.0 (3) |
| C6—N3—H3 | 120 (3) | C10—C9—C8 | 120.0 (3) |
| N3—C1—N2 | 121.9 (2) | C10—C9—H9 | 120.0 |
| N3—C1—C2 | 120.1 (3) | C8—C9—H9 | 120.0 |
| N2—C1—C2 | 117.9 (3) | C11—C10—C9 | 119.9 (4) |
| N1—C2—C1 | 123.0 (3) | C11—C10—H10 | 120.0 |
| N1—C2—H2A | 118.5 | C9—C10—H10 | 120.0 |
| C1—C2—H2A | 118.5 | C10—C11—C12 | 120.5 (3) |
| C4—C3—N1 | 121.6 (3) | C10—C11—H11 | 119.8 |
| C4—C3—H3A | 119.2 | C12—C11—H11 | 119.8 |
| N1—C3—H3A | 119.2 | C7—C12—C11 | 120.7 (3) |
| C3—C4—N2 | 121.4 (3) | C7—C12—H12 | 119.7 |
| C3—C4—H4 | 119.3 | C11—C12—H12 | 119.7 |
| C6—N3—C1—N2 | 2.6 (5) | N3—C6—C7—C8 | −175.6 (3) |
| C6—N3—C1—C2 | −178.1 (3) | C12—C7—C8—O1 | −179.2 (3) |
| C4—N2—C1—N3 | −179.0 (3) | C6—C7—C8—O1 | 1.2 (4) |
| C4—N2—C1—C2 | 1.7 (4) | C12—C7—C8—C9 | 0.3 (4) |
| C3—N1—C2—C1 | −1.5 (5) | C6—C7—C8—C9 | −179.3 (3) |
| N3—C1—C2—N1 | 179.9 (3) | O1—C8—C9—C10 | 178.6 (3) |
| N2—C1—C2—N1 | −0.7 (5) | C7—C8—C9—C10 | −0.9 (5) |
| C2—N1—C3—C4 | 2.8 (5) | C8—C9—C10—C11 | 0.8 (5) |
| N1—C3—C4—N2 | −1.8 (5) | C9—C10—C11—C12 | −0.2 (5) |
| C1—N2—C4—C3 | −0.5 (5) | C8—C7—C12—C11 | 0.3 (5) |
| C1—N3—C6—C7 | 74.2 (4) | C6—C7—C12—C11 | 179.9 (3) |
| N3—C6—C7—C12 | 4.9 (4) | C10—C11—C12—C7 | −0.4 (5) |
| H··· | ||||
| O1—H1···N1ii | 0.84 (1) | 1.99 (2) | 2.813 (3) | 168 (5) |
| N2—H2···N2iii | 0.88 (1) | 1.93 (2) | 2.793 (5) | 166 (6) |
| N3—H3···O2 | 0.88 (1) | 2.04 (2) | 2.868 (7) | 158 (4) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N1i | 0.84 (1) | 1.99 (2) | 2.813 (3) | 168 (5) |
| N2—H2⋯N2ii | 0.88 (1) | 1.93 (2) | 2.793 (5) | 166 (6) |
| N3—H3⋯O2 | 0.88 (1) | 2.04 (2) | 2.868 (7) | 158 (4) |
Symmetry codes: (i) ; (ii) .