Literature DB >> 22904864

N-Benzyl-3,5-dide-oxy-3,5-imino-1,2-O-isopropyl-idene-β-l-lyxofuran-ose.

David S Edgeley, Sarah F Jenkinson, Gabriel Lenagh-Snow, Catherine Rutherford, George W J Fleet, Amber L Thompson.   

Abstract

X-ray crystallography confirmed the formation, structure and relative stereochemistry of the title compound, C(15)H(19)NO(3), which contains a sterically congested four-membered azetidine ring system. The absolute configuration was determined by the use of l-arabinose as the starting material.

Entities:  

Year:  2012        PMID: 22904864      PMCID: PMC3414331          DOI: 10.1107/S1600536812030656

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on azetidines, see: Krämer et al. (1997 ▶); Michaud et al. (1997a ▶,b ▶); Dekaris & Reissig (2010 ▶); Soengas et al. (2011 ▶); Jenkinson et al. (2011 ▶); Lenagh-Snow et al. (2011 ▶, 2012 ▶); Lee et al. (2012 ▶). For related literature on imino­sugars, see: Asano et al. (2000 ▶); Watson et al. (2001 ▶). For details of the cryostat, see: Cosier & Glazer (1986 ▶). For details of hydrogen refinement, see: Cooper et al. (2010 ▶). For references to the Chebychev polynomial, see: Prince (1982 ▶); Watkin (1994 ▶).

Experimental

Crystal data

C15H19NO3 M = 261.32 Monoclinic, a = 9.1674 (2) Å b = 5.7551 (1) Å c = 13.1112 (3) Å β = 106.9544 (8)° V = 661.67 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.24 × 0.23 × 0.07 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.94, T max = 0.99 13110 measured reflections 1638 independent reflections 1544 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.087 S = 0.94 1638 reflections 172 parameters 1 restraint H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Data collection: COLLECT (Nonius, 2001 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812030656/lh5500sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030656/lh5500Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H19NO3F(000) = 280
Mr = 261.32Dx = 1.312 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1627 reflections
a = 9.1674 (2) Åθ = 5–27°
b = 5.7551 (1) ŵ = 0.09 mm1
c = 13.1112 (3) ÅT = 150 K
β = 106.9544 (8)°Plate, colourless
V = 661.67 (2) Å30.24 × 0.23 × 0.07 mm
Z = 2
Nonius KappaCCD diffractometer1544 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.014
ω scansθmax = 27.4°, θmin = 5.4°
Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997)h = −11→11
Tmin = 0.94, Tmax = 0.99k = −7→6
13110 measured reflectionsl = −16→16
1638 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.087 Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 22.1 34.0 17.6 5.07
S = 0.94(Δ/σ)max = 0.0003286
1638 reflectionsΔρmax = 0.17 e Å3
172 parametersΔρmin = −0.18 e Å3
1 restraint
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1 K.
xyzUiso*/Ueq
O10.09793 (13)0.5625 (2)0.84062 (10)0.0269
C20.25050 (17)0.6293 (3)0.89568 (13)0.0260
C30.35745 (18)0.6618 (3)0.82587 (13)0.0262
N40.31206 (15)0.5481 (3)0.72006 (11)0.0264
C50.45568 (19)0.4116 (4)0.74729 (15)0.0318
C60.48402 (19)0.4783 (3)0.86494 (14)0.0292
O70.42651 (14)0.3113 (3)0.92411 (10)0.0319
C80.31601 (19)0.4200 (3)0.96665 (14)0.0284
O90.19278 (13)0.2728 (3)0.96037 (10)0.0313
C100.07349 (18)0.3246 (3)0.86343 (14)0.0274
C110.0820 (2)0.1650 (3)0.77364 (14)0.0306
C12−0.07829 (19)0.3058 (4)0.88768 (15)0.0333
C130.2813 (2)0.6967 (3)0.62624 (14)0.0309
C140.2617 (2)0.5526 (4)0.52659 (14)0.0288
C150.3343 (2)0.6152 (4)0.45124 (14)0.0320
C160.3150 (2)0.4828 (4)0.35950 (14)0.0353
C170.2236 (2)0.2866 (4)0.34202 (15)0.0346
C180.1518 (2)0.2208 (4)0.41731 (16)0.0379
C190.1714 (2)0.3523 (4)0.50899 (15)0.0343
H210.24890.77220.93650.0300*
H310.39620.82320.82660.0305*
H510.44160.24800.73050.0388*
H520.53130.47790.71480.0374*
H610.58710.53250.90420.0348*
H810.36660.46391.04300.0337*
H1120.06780.00540.79310.0457*
H1130.00020.20590.70920.0453*
H1110.18070.17820.76120.0454*
H121−0.09090.14890.91120.0506*
H123−0.15890.34440.82200.0494*
H122−0.07820.41560.94540.0507*
H1320.18710.78720.62080.0373*
H1310.36790.80670.63100.0372*
H1510.39770.75070.46300.0386*
H1610.36460.52900.30640.0422*
H1710.21000.20000.27820.0423*
H1810.08960.08540.40670.0458*
H1910.12080.30770.55890.0420*
U11U22U33U12U13U23
O10.0214 (5)0.0238 (6)0.0331 (6)0.0007 (5)0.0041 (4)0.0028 (5)
C20.0234 (7)0.0239 (8)0.0291 (7)−0.0006 (6)0.0051 (6)−0.0014 (7)
C30.0234 (7)0.0242 (8)0.0299 (7)−0.0018 (6)0.0063 (6)−0.0014 (6)
N40.0255 (6)0.0246 (7)0.0293 (7)−0.0002 (6)0.0081 (5)−0.0014 (6)
C50.0287 (8)0.0290 (9)0.0385 (9)0.0023 (7)0.0108 (7)−0.0040 (8)
C60.0225 (7)0.0289 (9)0.0349 (8)−0.0002 (7)0.0063 (6)−0.0003 (7)
O70.0293 (6)0.0270 (6)0.0393 (6)0.0054 (5)0.0100 (5)0.0060 (6)
C80.0251 (7)0.0274 (9)0.0313 (8)0.0014 (7)0.0058 (6)0.0036 (7)
O90.0264 (6)0.0333 (7)0.0311 (6)−0.0017 (5)0.0034 (5)0.0078 (5)
C100.0248 (7)0.0257 (8)0.0299 (8)−0.0007 (7)0.0054 (6)0.0049 (7)
C110.0291 (8)0.0254 (8)0.0361 (8)−0.0019 (7)0.0077 (7)0.0013 (7)
C120.0264 (7)0.0366 (10)0.0376 (8)−0.0030 (8)0.0105 (6)0.0037 (8)
C130.0365 (8)0.0249 (8)0.0318 (8)−0.0035 (8)0.0106 (7)−0.0007 (7)
C140.0268 (7)0.0279 (9)0.0307 (8)0.0010 (7)0.0066 (6)−0.0015 (7)
C150.0289 (8)0.0330 (10)0.0326 (8)−0.0028 (8)0.0069 (6)0.0022 (7)
C160.0307 (8)0.0430 (12)0.0337 (9)0.0009 (8)0.0116 (7)0.0003 (8)
C170.0306 (8)0.0374 (10)0.0342 (8)0.0042 (8)0.0070 (7)−0.0071 (8)
C180.0374 (9)0.0322 (10)0.0447 (10)−0.0062 (8)0.0129 (8)−0.0080 (9)
C190.0357 (9)0.0317 (10)0.0379 (9)−0.0066 (8)0.0147 (7)−0.0034 (8)
O1—C21.4271 (19)C11—H1120.972
O1—C101.433 (2)C11—H1130.981
C2—C31.535 (2)C11—H1110.967
C2—C81.534 (2)C12—H1210.972
C2—H210.984C12—H1230.983
C3—N41.480 (2)C12—H1220.985
C3—C61.542 (2)C13—C141.513 (2)
C3—H310.994C13—H1320.993
N4—C51.484 (2)C13—H1311.003
N4—C131.457 (2)C14—C151.390 (2)
C5—C61.536 (2)C14—C191.399 (3)
C5—H510.967C15—C161.391 (3)
C5—H520.990C15—H1510.957
C6—O71.429 (2)C16—C171.385 (3)
C6—H610.986C16—H1610.974
O7—C81.435 (2)C17—C181.389 (3)
C8—O91.395 (2)C17—H1710.950
C8—H811.005C18—C191.387 (3)
O9—C101.4456 (19)C18—H1810.952
C10—C111.513 (3)C19—H1910.941
C10—C121.519 (2)
C2—O1—C10109.99 (13)O9—C10—C12107.79 (14)
O1—C2—C3115.67 (13)O1—C10—C12108.68 (15)
O1—C2—C8104.34 (14)C11—C10—C12112.21 (15)
C3—C2—C8104.59 (14)C10—C11—H112109.1
O1—C2—H21109.4C10—C11—H113108.9
C3—C2—H21109.7H112—C11—H113109.0
C8—C2—H21113.1C10—C11—H111110.3
C2—C3—N4116.83 (13)H112—C11—H111108.8
C2—C3—C6105.56 (14)H113—C11—H111110.7
N4—C3—C689.27 (13)C10—C12—H121109.5
C2—C3—H31113.4C10—C12—H123107.6
N4—C3—H31115.1H121—C12—H123111.0
C6—C3—H31113.9C10—C12—H122108.6
C3—N4—C591.22 (12)H121—C12—H122109.0
C3—N4—C13117.65 (15)H123—C12—H122111.1
C5—N4—C13116.97 (14)N4—C13—C14110.62 (16)
N4—C5—C689.30 (13)N4—C13—H132108.6
N4—C5—H51114.2C14—C13—H132110.1
C6—C5—H51116.3N4—C13—H131111.3
N4—C5—H52112.1C14—C13—H131107.0
C6—C5—H52113.7H132—C13—H131109.2
H51—C5—H52109.9C13—C14—C15120.71 (17)
C3—C6—C586.95 (13)C13—C14—C19120.65 (16)
C3—C6—O7106.25 (13)C15—C14—C19118.64 (17)
C5—C6—O7113.33 (15)C14—C15—C16120.39 (18)
C3—C6—H61118.1C14—C15—H151119.4
C5—C6—H61117.3C16—C15—H151120.3
O7—C6—H61112.3C15—C16—C17120.55 (17)
C6—O7—C8109.39 (14)C15—C16—H161120.0
C2—C8—O7107.62 (14)C17—C16—H161119.4
C2—C8—O9105.91 (13)C16—C17—C18119.59 (18)
O7—C8—O9111.33 (16)C16—C17—H171119.4
C2—C8—H81113.1C18—C17—H171121.0
O7—C8—H81108.9C17—C18—C19119.92 (19)
O9—C8—H81110.0C17—C18—H181120.5
C8—O9—C10108.58 (13)C19—C18—H181119.6
O9—C10—O1104.85 (14)C14—C19—C18120.89 (17)
O9—C10—C11111.18 (15)C14—C19—H191119.8
O1—C10—C11111.77 (14)C18—C19—H191119.3
D—H···AD—HH···AD···AD—H···A
C11—H111···N40.972.583.266 (3)128
  5 in total

Review 1.  Polyhydroxylated alkaloids -- natural occurrence and therapeutic applications.

Authors:  A A Watson; G W Fleet; N Asano; R J Molyneux; R J Nash
Journal:  Phytochemistry       Date:  2001-02       Impact factor: 4.072

2.  Inhibition of nonmammalian glycosidases by azetidine iminosugars derived from stable 3,5-di-O-triflates of pentoses.

Authors:  Gabriel M J Lenagh-Snow; Noelia Araujo; Sarah F Jenkinson; Catherine Rutherford; Shinpei Nakagawa; Atsushi Kato; Chu-Yi Yu; Alexander C Weymouth-Wilson; George W J Fleet
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3.  Synthesis and evaluation of eight- and four-membered iminosugar analogues as inhibitors of testicular ceramide-specific glucosyltransferase, testicular β-glucosidase 2, and other glycosidases.

Authors:  Jae Chul Lee; Subhashree Francis; Dinah Dutta; Vijayalaxmi Gupta; Yan Yang; Jin-Yi Zhu; Joseph S Tash; Ernst Schönbrunn; Gunda I Georg
Journal:  J Org Chem       Date:  2012-03-20       Impact factor: 4.354

4.  Azetidine iminosugars from the cyclization of 3,5-di-O-triflates of α-furanosides and of 2,4-di-O-triflates of β-pyranosides derived from glucose.

Authors:  Gabriel M J Lenagh-Snow; Noelia Araújo; Sarah F Jenkinson; R Fernando Martínez; Yousuke Shimada; Chu-Yi Yu; Atsushi Kato; George W J Fleet
Journal:  Org Lett       Date:  2012-04-05       Impact factor: 6.005

5.  N-Benzyl-1,3-dide-oxy-1,3-imino-l-xylitol.

Authors:  Sarah F Jenkinson; Gabriel M J Lenagh-Snow; George W J Fleet; Amber L Thompson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  5 in total

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