Literature DB >> 22904801

(Z)-3-Benzyl-1,5-benzothia-zepin-4(5H)-one.

V Sabari, R Selvakumar, M Bakthadoss, S Aravindhan.   

Abstract

In the crystal structure of the title compound, C(16)H(13)NOS, mol-ecules are linked into cyclic centrosymmetric R(2) (2)(8) dimers via pairs of N-H⋯O hydrogen bonds. The seven-membered ring adopts a boat conformation.

Entities:  

Year:  2012        PMID: 22904801      PMCID: PMC3414268          DOI: 10.1107/S1600536812029054

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical properties of thia­zepin derivatives, see: Tomascovic et al. (2000 ▶); Rajsner et al. (1971 ▶); Metys et al. (1965 ▶). For conformations of thia­zepin derivatives, see: Huang et al. (2011 ▶). For a related structure, see: Sabari et al. (2012 ▶).For graph-set analysis of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H13NOS M = 267.33 Monoclinic, a = 9.3409 (6) Å b = 11.7876 (7) Å c = 11.8310 (6) Å β = 94.727 (3)° V = 1298.24 (13) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 293 K 0.32 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.980, T max = 0.990 11696 measured reflections 3220 independent reflections 2700 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.03 3220 reflections 224 parameters All H-atom parameters refined Δρmax = 0.25 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029054/bt5942sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029054/bt5942Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029054/bt5942Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13NOSF(000) = 560
Mr = 267.33Dx = 1.368 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8725 reflections
a = 9.3409 (6) Åθ = 2.8–29.1°
b = 11.7876 (7) ŵ = 0.24 mm1
c = 11.8310 (6) ÅT = 293 K
β = 94.727 (3)°Monoclinic, colourless
V = 1298.24 (13) Å30.32 × 0.20 × 0.10 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3220 independent reflections
Radiation source: fine-focus sealed tube2700 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
Detector resolution: 15.9948 pixels mm-1θmax = 28.3°, θmin = 2.2°
ω and φ scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −12→15
Tmin = 0.980, Tmax = 0.990l = −15→15
11696 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100All H-atom parameters refined
S = 1.03w = 1/[σ2(Fo2) + (0.0473P)2 + 0.3853P] where P = (Fo2 + 2Fc2)/3
3220 reflections(Δ/σ)max = 0.001
224 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H10A0.9319 (19)0.4199 (16)1.0576 (15)0.054 (5)*
H141.158 (2)0.0216 (19)1.2706 (18)0.071 (6)*
H131.253 (3)0.210 (2)1.287 (2)0.090 (7)*
H20.520 (2)0.0349 (17)0.7510 (18)0.067 (6)*
H40.264 (2)0.0652 (19)1.0082 (18)0.075 (6)*
H30.341 (2)−0.0401 (19)0.8584 (18)0.078 (6)*
H50.367 (2)0.2445 (15)1.0477 (16)0.051 (5)*
H90.906 (2)0.2452 (13)0.8225 (15)0.047 (4)*
H121.152 (2)0.3537 (18)1.1720 (16)0.066 (6)*
H160.8605 (18)0.1324 (14)1.0263 (14)0.048 (4)*
H150.960 (2)−0.0149 (19)1.1441 (18)0.075 (6)*
H0.4802 (19)0.4003 (15)0.9656 (14)0.050 (5)*
H10B1.0195 (19)0.3709 (15)0.9641 (15)0.053 (5)*
S10.67169 (4)0.23482 (4)0.74334 (3)0.04629 (13)
O10.69525 (11)0.49768 (9)1.00015 (11)0.0515 (3)
N10.54541 (12)0.35755 (9)0.94400 (10)0.0376 (3)
C90.81284 (15)0.27217 (12)0.84256 (12)0.0377 (3)
C10.54547 (14)0.18101 (11)0.83286 (11)0.0361 (3)
C80.80771 (13)0.33382 (10)0.93653 (11)0.0326 (3)
C70.67881 (14)0.40033 (11)0.96316 (11)0.0345 (3)
C100.94322 (15)0.35387 (12)1.01201 (13)0.0397 (3)
C60.49997 (14)0.24447 (10)0.92206 (11)0.0332 (3)
C110.99742 (13)0.25642 (11)1.08739 (11)0.0335 (3)
C160.94145 (15)0.14763 (12)1.08123 (12)0.0396 (3)
C121.11413 (16)0.27689 (16)1.16571 (13)0.0490 (4)
C50.39623 (16)0.20069 (14)0.98728 (14)0.0448 (3)
C141.11727 (19)0.08314 (19)1.22626 (15)0.0599 (5)
C131.17296 (18)0.1913 (2)1.23380 (15)0.0628 (5)
C20.48567 (18)0.07488 (14)0.80956 (15)0.0511 (4)
C151.00050 (19)0.06142 (15)1.15013 (14)0.0508 (4)
C40.33594 (18)0.09600 (16)0.96179 (17)0.0568 (4)
C30.37969 (19)0.03362 (15)0.87283 (18)0.0613 (5)
U11U22U33U12U13U23
S10.0532 (2)0.0562 (2)0.02983 (18)−0.00076 (17)0.00540 (15)−0.00396 (14)
O10.0427 (6)0.0312 (5)0.0809 (8)0.0002 (4)0.0071 (5)−0.0154 (5)
N10.0322 (6)0.0297 (5)0.0512 (7)0.0043 (4)0.0054 (5)−0.0075 (5)
C90.0372 (7)0.0390 (7)0.0381 (7)0.0021 (5)0.0096 (5)0.0012 (5)
C10.0350 (6)0.0356 (7)0.0370 (6)0.0033 (5)−0.0019 (5)−0.0029 (5)
C80.0327 (6)0.0275 (6)0.0382 (6)−0.0004 (5)0.0067 (5)0.0038 (5)
C70.0363 (6)0.0280 (6)0.0396 (6)0.0018 (5)0.0054 (5)−0.0013 (5)
C100.0339 (7)0.0322 (7)0.0530 (8)−0.0054 (5)0.0037 (6)−0.0020 (6)
C60.0301 (6)0.0311 (6)0.0377 (6)0.0021 (5)−0.0018 (5)−0.0018 (5)
C110.0258 (6)0.0411 (7)0.0340 (6)−0.0021 (5)0.0057 (5)−0.0062 (5)
C160.0374 (7)0.0402 (7)0.0403 (7)−0.0027 (6)−0.0011 (5)0.0001 (6)
C120.0338 (7)0.0670 (10)0.0457 (8)−0.0105 (7)0.0010 (6)−0.0089 (7)
C50.0367 (7)0.0492 (8)0.0489 (8)−0.0044 (6)0.0063 (6)−0.0045 (7)
C140.0478 (9)0.0839 (13)0.0477 (9)0.0169 (9)0.0033 (7)0.0187 (9)
C130.0374 (8)0.1029 (16)0.0461 (9)−0.0014 (9)−0.0081 (7)0.0013 (9)
C20.0507 (9)0.0421 (8)0.0593 (9)0.0009 (7)−0.0025 (7)−0.0175 (7)
C150.0534 (9)0.0482 (9)0.0509 (8)0.0051 (7)0.0045 (7)0.0096 (7)
C40.0458 (9)0.0543 (10)0.0705 (11)−0.0141 (7)0.0066 (8)0.0015 (8)
C30.0529 (10)0.0412 (9)0.0888 (13)−0.0142 (7)−0.0001 (9)−0.0104 (9)
S1—C91.7479 (15)C11—C121.392 (2)
S1—C11.7663 (14)C16—C151.388 (2)
O1—C71.2332 (16)C16—H160.972 (17)
N1—C71.3460 (17)C12—C131.377 (3)
N1—C61.4165 (16)C12—H120.97 (2)
N1—H0.846 (18)C5—C41.379 (2)
C9—C81.3324 (19)C5—H50.942 (19)
C9—H90.976 (18)C14—C131.377 (3)
C1—C21.388 (2)C14—C151.380 (3)
C1—C61.3885 (18)C14—H140.96 (2)
C8—C71.4920 (17)C13—H130.96 (3)
C8—C101.5064 (19)C2—C31.378 (3)
C10—C111.515 (2)C2—H20.92 (2)
C10—H10A0.958 (19)C15—H150.98 (2)
C10—H10B0.968 (18)C4—C31.373 (3)
C6—C51.387 (2)C4—H40.97 (2)
C11—C161.3845 (19)C3—H30.95 (2)
C9—S1—C1101.05 (6)C11—C16—C15121.13 (14)
C7—N1—C6129.99 (11)C11—C16—H16118.4 (10)
C7—N1—H114.0 (12)C15—C16—H16120.4 (10)
C6—N1—H113.8 (12)C13—C12—C11121.01 (17)
C8—C9—S1128.37 (11)C13—C12—H12120.7 (12)
C8—C9—H9118.4 (10)C11—C12—H12118.2 (12)
S1—C9—H9113.2 (10)C4—C5—C6120.17 (15)
C2—C1—C6119.54 (13)C4—C5—H5121.1 (11)
C2—C1—S1118.81 (11)C6—C5—H5118.7 (11)
C6—C1—S1121.57 (10)C13—C14—C15119.21 (16)
C9—C8—C7123.22 (12)C13—C14—H14122.2 (13)
C9—C8—C10119.61 (12)C15—C14—H14118.5 (13)
C7—C8—C10116.46 (12)C14—C13—C12120.67 (16)
O1—C7—N1119.66 (12)C14—C13—H13121.2 (15)
O1—C7—C8119.00 (12)C12—C13—H13118.1 (15)
N1—C7—C8121.30 (11)C3—C2—C1120.36 (15)
C8—C10—C11116.97 (11)C3—C2—H2122.7 (13)
C8—C10—H10A109.6 (11)C1—C2—H2117.0 (13)
C11—C10—H10A109.4 (11)C14—C15—C16120.12 (17)
C8—C10—H10B107.9 (10)C14—C15—H15120.0 (12)
C11—C10—H10B106.0 (11)C16—C15—H15119.9 (13)
H10A—C10—H10B106.3 (15)C3—C4—C5120.30 (16)
C5—C6—C1119.61 (13)C3—C4—H4119.7 (13)
C5—C6—N1117.44 (12)C5—C4—H4120.0 (13)
C1—C6—N1122.71 (12)C4—C3—C2119.98 (16)
C16—C11—C12117.84 (14)C4—C3—H3119.7 (13)
C16—C11—C10124.38 (12)C2—C3—H3120.2 (13)
C12—C11—C10117.75 (13)
C1—S1—C9—C8−49.95 (14)C7—N1—C6—C1−56.6 (2)
C9—S1—C1—C2−128.63 (12)C8—C10—C11—C168.3 (2)
C9—S1—C1—C654.52 (12)C8—C10—C11—C12−173.77 (12)
S1—C9—C8—C7−11.3 (2)C12—C11—C16—C15−0.6 (2)
S1—C9—C8—C10178.70 (10)C10—C11—C16—C15177.38 (14)
C6—N1—C7—O1−167.26 (14)C16—C11—C12—C130.8 (2)
C6—N1—C7—C815.0 (2)C10—C11—C12—C13−177.31 (14)
C9—C8—C7—O1−135.97 (15)C1—C6—C5—C4−1.7 (2)
C10—C8—C7—O134.35 (18)N1—C6—C5—C4172.74 (14)
C9—C8—C7—N141.8 (2)C15—C14—C13—C12−0.6 (3)
C10—C8—C7—N1−147.91 (13)C11—C12—C13—C14−0.2 (3)
C9—C8—C10—C11−76.59 (17)C6—C1—C2—C31.4 (2)
C7—C8—C10—C11112.72 (14)S1—C1—C2—C3−175.52 (14)
C2—C1—C6—C50.5 (2)C13—C14—C15—C160.8 (3)
S1—C1—C6—C5177.32 (11)C11—C16—C15—C14−0.2 (2)
C2—C1—C6—N1−173.63 (13)C6—C5—C4—C31.0 (3)
S1—C1—C6—N13.20 (18)C5—C4—C3—C20.9 (3)
C7—N1—C6—C5129.13 (16)C1—C2—C3—C4−2.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H···O1i0.847 (18)2.098 (19)2.9407 (15)173.1 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H⋯O1i 0.847 (18)2.098 (19)2.9407 (15)173.1 (16)

Symmetry code: (i) .

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Authors:  J Metys; J Metysová
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3.  2-(Furan-2-yl)-5-(2-nitro-benz-yl)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  Zhao-Hui Huang; Yong Chu; De-Yong Ye
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18

4.  (Z)-3-(2-Chloro-benz-yl)-1,5-benzothia-zepin-4(5H)-one.

Authors:  V Sabari; R Selvakumar; M Bakthadoss; S Aravindhan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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