Literature DB >> 22798927

(Z)-3-(2-Chloro-benz-yl)-1,5-benzothia-zepin-4(5H)-one.

V Sabari, R Selvakumar, M Bakthadoss, S Aravindhan.   

Abstract

In the crystal structure of the title compound, C(16)H(12)ClNOS, the mol-ecules are linked into centrosymmetric R(2) (2)(8) dimers via pairs of N-H⋯O hydrogen bonds. The seven-membered ring adopts a boat conformation.

Entities:  

Year:  2012        PMID: 22798927      PMCID: PMC3394062          DOI: 10.1107/S1600536812029030

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical properties of thia­zepin derivatives, see: Tomascovic et al. (2000 ▶); Rajsner et al. (1971 ▶); Metys et al. (1965 ▶). For conformations of thia­zepin derivatives, see: Huang et al. (2011 ▶). For graph-set analysis of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H12ClNOS M = 301.78 Triclinic, a = 8.4958 (3) Å b = 8.7197 (3) Å c = 10.0520 (3) Å α = 101.930 (1)° β = 95.179 (2)° γ = 90.314 (2)° V = 725.38 (4) Å3 Z = 2 Mo Kα radiation μ = 0.40 mm−1 T = 298 K 0.32 × 0.20 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.980, T max = 0.990 10314 measured reflections 3596 independent reflections 2961 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.129 S = 0.93 3596 reflections 185 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.54 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029030/bt5944sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029030/bt5944Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029030/bt5944Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12ClNOSZ = 2
Mr = 301.78F(000) = 312
Triclinic, P1Dx = 1.382 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4958 (3) ÅCell parameters from 8725 reflections
b = 8.7197 (3) Åθ = 2.8–29.1°
c = 10.0520 (3) ŵ = 0.40 mm1
α = 101.930 (1)°T = 298 K
β = 95.179 (2)°Triclinic, colourless
γ = 90.314 (2)°0.32 × 0.20 × 0.10 mm
V = 725.38 (4) Å3
Bruker APEXII CCD area-detector diffractometer3596 independent reflections
Radiation source: fine-focus sealed tube2961 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 15.9948 pixels mm-1θmax = 28.6°, θmin = 2.1°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −11→10
Tmin = 0.980, Tmax = 0.990l = −12→13
10314 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 0.93w = 1/[σ2(Fo2) + (0.0686P)2 + 0.3987P] where P = (Fo2 + 2Fc2)/3
3596 reflections(Δ/σ)max < 0.001
185 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3986 (3)0.7811 (3)0.4385 (2)0.0611 (6)
H10.33290.78500.36020.073*
C20.5362 (3)0.6996 (3)0.4275 (3)0.0727 (7)
H20.56400.65000.34210.087*
C30.6327 (3)0.6915 (3)0.5429 (3)0.0686 (6)
H30.72590.63620.53540.082*
C40.5921 (2)0.7650 (3)0.6696 (2)0.0554 (5)
H40.65780.75870.74740.066*
C50.45365 (19)0.8482 (2)0.68197 (17)0.0400 (4)
N10.42278 (17)0.92803 (19)0.81405 (14)0.0425 (3)
C60.29024 (18)0.92977 (19)0.87848 (16)0.0352 (3)
C70.13755 (18)0.85995 (19)0.80480 (17)0.0361 (3)
C80.0826 (2)0.8806 (2)0.68177 (19)0.0455 (4)
H8−0.01940.84300.64970.055*
C90.3563 (2)0.8580 (2)0.56553 (17)0.0429 (4)
C100.0416 (2)0.7741 (2)0.88754 (19)0.0435 (4)
H10A0.02360.84400.97300.052*
H10B−0.06040.74260.83760.052*
C110.12551 (19)0.6308 (2)0.91707 (17)0.0382 (4)
C120.2153 (2)0.6381 (2)1.0410 (2)0.0506 (4)
H120.21980.73121.10620.061*
C130.2978 (3)0.5119 (3)1.0702 (2)0.0615 (6)
H130.35780.52121.15380.074*
C140.2922 (3)0.3731 (3)0.9772 (3)0.0622 (6)
H140.34860.28820.99700.075*
C150.2030 (3)0.3594 (3)0.8545 (2)0.0594 (5)
H150.19690.26460.79140.071*
C160.1220 (2)0.4874 (2)0.82485 (18)0.0466 (4)
Cl10.01021 (9)0.46470 (9)0.66795 (6)0.0789 (2)
O10.29428 (15)0.98862 (16)1.00167 (12)0.0457 (3)
S10.18502 (6)0.97237 (7)0.57440 (5)0.05265 (16)
H1A0.501 (3)0.958 (3)0.867 (2)0.051 (6)*
U11U22U33U12U13U23
C10.0598 (12)0.0839 (16)0.0365 (9)−0.0198 (11)−0.0013 (8)0.0081 (9)
C20.0641 (14)0.0927 (18)0.0539 (13)−0.0154 (13)0.0192 (11)−0.0075 (12)
C30.0482 (11)0.0836 (17)0.0714 (15)0.0037 (11)0.0188 (10)0.0043 (12)
C40.0397 (9)0.0745 (14)0.0536 (11)0.0014 (9)0.0038 (8)0.0170 (10)
C50.0358 (8)0.0482 (10)0.0363 (8)−0.0078 (7)0.0001 (6)0.0113 (7)
N10.0328 (7)0.0581 (9)0.0340 (7)−0.0079 (6)−0.0066 (6)0.0076 (6)
C60.0359 (7)0.0334 (8)0.0362 (8)−0.0005 (6)−0.0041 (6)0.0105 (6)
C70.0308 (7)0.0366 (8)0.0408 (8)0.0011 (6)−0.0018 (6)0.0104 (6)
C80.0348 (8)0.0536 (11)0.0492 (10)−0.0023 (7)−0.0088 (7)0.0186 (8)
C90.0420 (8)0.0497 (10)0.0373 (8)−0.0107 (7)−0.0029 (7)0.0130 (7)
C100.0333 (8)0.0494 (10)0.0496 (10)0.0012 (7)0.0043 (7)0.0139 (8)
C110.0347 (7)0.0421 (9)0.0396 (8)−0.0047 (6)0.0059 (6)0.0118 (7)
C120.0593 (11)0.0457 (10)0.0452 (10)−0.0068 (8)−0.0056 (8)0.0103 (8)
C130.0661 (13)0.0602 (13)0.0611 (13)−0.0029 (10)−0.0127 (10)0.0279 (11)
C140.0671 (13)0.0521 (12)0.0759 (15)0.0095 (10)0.0129 (11)0.0299 (11)
C150.0749 (14)0.0442 (11)0.0595 (12)0.0017 (10)0.0226 (11)0.0051 (9)
C160.0504 (10)0.0523 (11)0.0373 (8)−0.0065 (8)0.0080 (7)0.0082 (7)
Cl10.0987 (5)0.0856 (5)0.0433 (3)−0.0106 (4)−0.0118 (3)0.0007 (3)
O10.0450 (7)0.0514 (7)0.0370 (6)−0.0043 (5)−0.0015 (5)0.0029 (5)
S10.0507 (3)0.0646 (3)0.0485 (3)0.0007 (2)−0.0081 (2)0.0308 (2)
C1—C21.372 (4)C8—S11.7554 (19)
C1—C91.393 (3)C8—H80.9300
C1—H10.9300C9—S11.767 (2)
C2—C31.373 (4)C10—C111.510 (3)
C2—H20.9300C10—H10A0.9700
C3—C41.378 (3)C10—H10B0.9700
C3—H30.9300C11—C121.390 (3)
C4—C51.387 (3)C11—C161.393 (3)
C4—H40.9300C12—C131.376 (3)
C5—C91.389 (2)C12—H120.9300
C5—N11.414 (2)C13—C141.366 (3)
N1—C61.347 (2)C13—H130.9300
N1—H1A0.81 (2)C14—C151.371 (3)
C6—O11.236 (2)C14—H140.9300
C6—C71.494 (2)C15—C161.384 (3)
C7—C81.330 (2)C15—H150.9300
C7—C101.513 (2)C16—Cl11.740 (2)
C2—C1—C9120.8 (2)C5—C9—S1121.50 (14)
C2—C1—H1119.6C1—C9—S1119.38 (15)
C9—C1—H1119.6C11—C10—C7111.24 (14)
C3—C2—C1119.9 (2)C11—C10—H10A109.4
C3—C2—H2120.0C7—C10—H10A109.4
C1—C2—H2120.0C11—C10—H10B109.4
C2—C3—C4120.2 (2)C7—C10—H10B109.4
C2—C3—H3119.9H10A—C10—H10B108.0
C4—C3—H3119.9C12—C11—C16116.03 (17)
C3—C4—C5120.4 (2)C12—C11—C10120.21 (16)
C3—C4—H4119.8C16—C11—C10123.74 (16)
C5—C4—H4119.8C13—C12—C11122.1 (2)
C4—C5—C9119.62 (17)C13—C12—H12118.9
C4—C5—N1117.68 (16)C11—C12—H12118.9
C9—C5—N1122.60 (17)C14—C13—C12120.3 (2)
C6—N1—C5129.94 (14)C14—C13—H13119.8
C6—N1—H1A112.3 (15)C12—C13—H13119.8
C5—N1—H1A115.5 (16)C13—C14—C15119.7 (2)
O1—C6—N1119.72 (14)C13—C14—H14120.2
O1—C6—C7118.76 (15)C15—C14—H14120.2
N1—C6—C7121.52 (14)C14—C15—C16119.7 (2)
C8—C7—C6123.87 (16)C14—C15—H15120.1
C8—C7—C10121.87 (15)C16—C15—H15120.1
C6—C7—C10114.06 (14)C15—C16—C11122.12 (18)
C7—C8—S1125.94 (14)C15—C16—Cl1118.14 (16)
C7—C8—H8117.0C11—C16—Cl1119.73 (15)
S1—C8—H8117.0C8—S1—C999.34 (8)
C5—C9—C1119.06 (19)
C9—C1—C2—C30.9 (4)C2—C1—C9—S1175.81 (18)
C1—C2—C3—C4−0.1 (4)C8—C7—C10—C11119.48 (19)
C2—C3—C4—C5−0.2 (4)C6—C7—C10—C11−65.55 (19)
C3—C4—C5—C9−0.4 (3)C7—C10—C11—C1296.9 (2)
C3—C4—C5—N1−176.6 (2)C7—C10—C11—C16−81.8 (2)
C4—C5—N1—C6−131.9 (2)C16—C11—C12—C130.9 (3)
C9—C5—N1—C652.0 (3)C10—C11—C12—C13−177.81 (19)
C5—N1—C6—O1169.22 (17)C11—C12—C13—C14−0.7 (3)
C5—N1—C6—C7−9.9 (3)C12—C13—C14—C15−0.4 (4)
O1—C6—C7—C8136.80 (19)C13—C14—C15—C161.3 (3)
N1—C6—C7—C8−44.0 (3)C14—C15—C16—C11−1.1 (3)
O1—C6—C7—C10−38.0 (2)C14—C15—C16—Cl1−179.98 (17)
N1—C6—C7—C10141.13 (17)C12—C11—C16—C150.0 (3)
C6—C7—C8—S17.7 (3)C10—C11—C16—C15178.67 (17)
C10—C7—C8—S1−177.85 (14)C12—C11—C16—Cl1178.87 (14)
C4—C5—C9—C11.2 (3)C10—C11—C16—Cl1−2.4 (2)
N1—C5—C9—C1177.26 (17)C7—C8—S1—C955.28 (19)
C4—C5—C9—S1−176.03 (15)C5—C9—S1—C8−59.33 (16)
N1—C5—C9—S10.0 (2)C1—C9—S1—C8123.43 (16)
C2—C1—C9—C5−1.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.82 (2)2.08 (2)2.8911 (19)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.82 (2)2.08 (2)2.8911 (19)174 (3)

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [Derivative of 4,9-dihydrothieno(2,3-b)benzo(e)thiepine--a new type of effective antihistaminic].

Authors:  J Metys; J Metysová
Journal:  Acta Biol Med Ger       Date:  1965

3.  2-(Furan-2-yl)-5-(2-nitro-benz-yl)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  Zhao-Hui Huang; Yong Chu; De-Yong Ye
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  (Z)-3-Benzyl-1,5-benzothia-zepin-4(5H)-one.

Authors:  V Sabari; R Selvakumar; M Bakthadoss; S Aravindhan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-04
  1 in total

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