Literature DB >> 21522675

2-(Furan-2-yl)-5-(2-nitro-benz-yl)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Zhao-Hui Huang1, Yong Chu, De-Yong Ye.   

Abstract

The title compound, C(20)H(16)N(2)O(4)S, was prepared by introduction of a 2-nitro-benzyl group to 2-(furan-2-yl)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one via an alkaline-catalysed reaction. The thia-zepine ring adopts a twist-boat conformation. The furan ring is oriented at dihedral angles of 56.75 (14) and 10.82 (14)° with respect to the two benzene rings, while the two benzene rings make a dihedral angle of 62.96 (10)°. Weak inter-molecular C-H⋯O hydrogen bonds occur in the crystal structure.

Entities:  

Year:  2010        PMID: 21522675      PMCID: PMC3050135          DOI: 10.1107/S1600536810052098

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was prepared as part of an investigation of novel GSK 3β inhibitors. For applications of non-ATP competitive glycogen synthase kinase 3β(GSK 3β) inhibitors, see: Martinez et al. (2002 ▶).

Experimental

Crystal data

C20H16N2O4S M = 380.41 Monoclinic, a = 11.061 (3) Å b = 8.538 (3) Å c = 19.340 (6) Å β = 105.535 (4)° V = 1759.7 (9) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 293 K 0.18 × 0.16 × 0.14 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.963, T max = 0.971 7699 measured reflections 3458 independent reflections 2755 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.140 S = 1.10 3458 reflections 244 parameters 12 restraints H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052098/xu5112sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052098/xu5112Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N2O4SF(000) = 792
Mr = 380.41Dx = 1.436 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1000 reflections
a = 11.061 (3) Åθ = 2.6–26.7°
b = 8.538 (3) ŵ = 0.21 mm1
c = 19.340 (6) ÅT = 293 K
β = 105.535 (4)°Block, light-yellow
V = 1759.7 (9) Å30.18 × 0.16 × 0.14 mm
Z = 4
Bruker SMART CCD area-detector diffractometer3458 independent reflections
Radiation source: fine-focus sealed tube2755 reflections with I > 2σ(I)
graphiteRint = 0.038
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.963, Tmax = 0.971k = −9→10
7699 measured reflectionsl = −23→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0823P)2 + 0.133P] where P = (Fo2 + 2Fc2)/3
3458 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.32 e Å3
12 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.88992 (5)0.50517 (6)0.22528 (3)0.04348 (19)
N10.86748 (14)0.47987 (17)0.06247 (8)0.0344 (4)
N20.54187 (16)0.5826 (2)−0.12646 (8)0.0452 (4)
O11.1607 (2)0.6320 (2)0.34025 (9)0.0879 (7)
O20.95960 (14)0.70935 (17)0.05012 (8)0.0517 (4)
O30.62377 (17)0.5009 (2)−0.13854 (8)0.0672 (5)
O40.44565 (16)0.6131 (2)−0.17221 (9)0.0748 (5)
C11.2646 (3)0.5769 (3)0.38975 (14)0.0791 (9)
H1A1.29500.61600.43600.095*
C21.3141 (2)0.4647 (4)0.36370 (14)0.0702 (7)
H2A1.38460.40700.38690.084*
C31.2399 (3)0.4454 (4)0.29201 (15)0.0882 (10)
H3A1.25420.37360.25890.106*
C41.14695 (19)0.5473 (2)0.28057 (10)0.0419 (5)
C51.04068 (17)0.5900 (2)0.21861 (10)0.0394 (4)
H5A1.03200.70420.21910.047*
C61.06808 (18)0.5463 (2)0.14781 (10)0.0408 (5)
H6A1.14320.60060.14420.049*
H6B1.08440.43470.14760.049*
C70.96163 (17)0.5866 (2)0.08346 (10)0.0383 (4)
C80.86766 (16)0.3349 (2)0.09979 (9)0.0348 (4)
C90.87861 (17)0.3321 (2)0.17369 (10)0.0393 (4)
C100.8751 (2)0.1872 (3)0.20661 (12)0.0523 (5)
H10A0.88410.18330.25580.063*
C110.8586 (2)0.0509 (3)0.16798 (13)0.0585 (6)
H11A0.8519−0.04380.19040.070*
C120.8520 (2)0.0544 (3)0.09558 (13)0.0513 (5)
H12A0.8435−0.03840.06950.062*
C130.85800 (18)0.1954 (2)0.06219 (11)0.0417 (5)
H13A0.85550.19700.01380.050*
C140.77070 (18)0.5078 (2)−0.00482 (10)0.0371 (4)
H14A0.73650.4077−0.02450.045*
H14B0.80980.5556−0.03890.045*
C150.66344 (16)0.6118 (2)0.00252 (9)0.0339 (4)
C160.55868 (17)0.6482 (2)−0.05424 (9)0.0368 (4)
C170.46416 (19)0.7472 (2)−0.04634 (11)0.0452 (5)
H17A0.39640.7693−0.08540.054*
C180.4709 (2)0.8125 (2)0.01949 (12)0.0494 (5)
H18A0.40800.87940.02530.059*
C190.5712 (2)0.7785 (2)0.07652 (11)0.0473 (5)
H19A0.57610.82200.12130.057*
C200.66531 (18)0.6798 (2)0.06802 (10)0.0407 (4)
H20A0.73230.65830.10760.049*
U11U22U33U12U13U23
S10.0388 (3)0.0601 (4)0.0317 (3)0.0035 (2)0.0097 (2)−0.0043 (2)
N10.0350 (8)0.0381 (8)0.0275 (8)0.0007 (6)0.0037 (6)0.0011 (6)
N20.0454 (9)0.0529 (11)0.0315 (9)−0.0075 (8)0.0002 (7)0.0006 (7)
O10.1060 (14)0.0885 (13)0.0440 (9)0.0542 (11)−0.0236 (9)−0.0251 (9)
O20.0547 (9)0.0492 (8)0.0477 (8)−0.0111 (7)0.0076 (7)0.0070 (7)
O30.0678 (11)0.0909 (13)0.0368 (9)0.0228 (9)0.0033 (8)−0.0118 (8)
O40.0579 (10)0.1064 (15)0.0429 (9)0.0081 (10)−0.0167 (7)−0.0144 (9)
C10.0895 (19)0.0787 (18)0.0430 (13)0.0247 (16)−0.0275 (13)−0.0115 (13)
C20.0528 (14)0.0937 (19)0.0517 (15)0.0275 (13)−0.0073 (11)−0.0008 (14)
C30.0848 (19)0.110 (2)0.0542 (15)0.0532 (18)−0.0095 (14)−0.0240 (15)
C40.0414 (10)0.0460 (11)0.0341 (10)0.0044 (9)0.0030 (8)−0.0063 (8)
C50.0375 (10)0.0409 (10)0.0371 (10)0.0039 (8)0.0053 (8)−0.0030 (8)
C60.0344 (9)0.0517 (12)0.0361 (10)−0.0022 (8)0.0089 (8)−0.0026 (9)
C70.0385 (10)0.0431 (11)0.0343 (10)−0.0003 (8)0.0117 (8)−0.0009 (8)
C80.0308 (9)0.0395 (10)0.0319 (9)0.0018 (7)0.0046 (7)0.0029 (7)
C90.0346 (9)0.0489 (11)0.0327 (10)0.0020 (8)0.0063 (8)0.0032 (8)
C100.0580 (13)0.0588 (14)0.0378 (11)−0.0007 (11)0.0092 (10)0.0130 (10)
C110.0672 (15)0.0487 (13)0.0548 (14)0.0000 (11)0.0081 (12)0.0148 (11)
C120.0561 (13)0.0403 (11)0.0521 (13)0.0026 (10)0.0051 (10)0.0026 (9)
C130.0421 (10)0.0447 (11)0.0364 (10)0.0030 (8)0.0073 (8)0.0008 (8)
C140.0409 (10)0.0398 (10)0.0283 (9)0.0005 (8)0.0051 (8)−0.0004 (7)
C150.0367 (9)0.0328 (9)0.0313 (9)−0.0058 (7)0.0076 (7)0.0035 (7)
C160.0381 (10)0.0376 (10)0.0326 (9)−0.0074 (8)0.0058 (8)0.0015 (7)
C170.0363 (10)0.0487 (12)0.0455 (12)0.0000 (9)0.0023 (9)0.0044 (9)
C180.0438 (11)0.0492 (12)0.0552 (13)0.0075 (9)0.0131 (10)−0.0008 (10)
C190.0511 (12)0.0504 (12)0.0401 (11)0.0016 (9)0.0119 (9)−0.0048 (9)
C200.0422 (10)0.0443 (11)0.0327 (10)0.0019 (8)0.0047 (8)−0.0008 (8)
S1—C91.769 (2)C8—C131.384 (3)
S1—C51.854 (2)C8—C91.402 (3)
N1—C71.361 (2)C9—C101.396 (3)
N1—C81.433 (2)C10—C111.369 (3)
N1—C141.466 (2)C10—H10A0.9300
N2—O31.215 (2)C11—C121.383 (3)
N2—O41.216 (2)C11—H11A0.9300
N2—C161.470 (2)C12—C131.376 (3)
O1—C41.336 (3)C12—H12A0.9300
O1—C11.368 (3)C13—H13A0.9300
O2—C71.228 (2)C14—C151.518 (3)
C1—C21.272 (4)C14—H14A0.9700
C1—H1A0.9300C14—H14B0.9700
C2—C31.419 (4)C15—C201.389 (3)
C2—H2A0.9300C15—C161.401 (2)
C3—C41.319 (3)C16—C171.384 (3)
C3—H3A0.9300C17—C181.374 (3)
C4—C51.482 (3)C17—H17A0.9300
C5—C61.526 (3)C18—C191.370 (3)
C5—H5A0.9800C18—H18A0.9300
C6—C71.506 (3)C19—C201.382 (3)
C6—H6A0.9700C19—H19A0.9300
C6—H6B0.9700C20—H20A0.9300
C9—S1—C5102.48 (9)C10—C9—S1119.28 (15)
C7—N1—C8122.04 (15)C8—C9—S1122.32 (15)
C7—N1—C14118.29 (15)C11—C10—C9121.33 (19)
C8—N1—C14119.33 (14)C11—C10—H10A119.3
O3—N2—O4122.38 (17)C9—C10—H10A119.3
O3—N2—C16119.38 (16)C10—C11—C12119.9 (2)
O4—N2—C16118.24 (18)C10—C11—H11A120.1
C4—O1—C1107.33 (19)C12—C11—H11A120.1
C2—C1—O1110.6 (2)C13—C12—C11119.8 (2)
C2—C1—H1A124.7C13—C12—H12A120.1
O1—C1—H1A124.7C11—C12—H12A120.1
C1—C2—C3106.1 (2)C12—C13—C8120.85 (19)
C1—C2—H2A127.0C12—C13—H13A119.6
C3—C2—H2A127.0C8—C13—H13A119.6
C4—C3—C2107.9 (2)N1—C14—C15114.53 (15)
C4—C3—H3A126.0N1—C14—H14A108.6
C2—C3—H3A126.0C15—C14—H14A108.6
C3—C4—O1108.01 (19)N1—C14—H14B108.6
C3—C4—C5135.4 (2)C15—C14—H14B108.6
O1—C4—C5116.57 (17)H14A—C14—H14B107.6
C4—C5—C6111.12 (15)C20—C15—C16115.38 (17)
C4—C5—S1112.40 (14)C20—C15—C14120.58 (16)
C6—C5—S1111.43 (13)C16—C15—C14124.03 (16)
C4—C5—H5A107.2C17—C16—C15122.67 (17)
C6—C5—H5A107.2C17—C16—N2115.49 (17)
S1—C5—H5A107.2C15—C16—N2121.83 (17)
C7—C6—C5112.73 (15)C18—C17—C16119.67 (18)
C7—C6—H6A109.0C18—C17—H17A120.2
C5—C6—H6A109.0C16—C17—H17A120.2
C7—C6—H6B109.0C19—C18—C17119.42 (19)
C5—C6—H6B109.0C19—C18—H18A120.3
H6A—C6—H6B107.8C17—C18—H18A120.3
O2—C7—N1120.66 (17)C18—C19—C20120.44 (19)
O2—C7—C6121.97 (17)C18—C19—H19A119.8
N1—C7—C6117.35 (17)C20—C19—H19A119.8
C13—C8—C9119.62 (17)C19—C20—C15122.40 (18)
C13—C8—N1119.29 (16)C19—C20—H20A118.8
C9—C8—N1121.09 (16)C15—C20—H20A118.8
C10—C9—C8118.34 (18)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O2i0.932.493.401 (3)168
C12—H12A···O2ii0.932.593.381 (3)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O2i0.932.493.401 (3)168
C12—H12A⋯O2ii0.932.593.381 (3)144

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  First non-ATP competitive glycogen synthase kinase 3 beta (GSK-3beta) inhibitors: thiadiazolidinones (TDZD) as potential drugs for the treatment of Alzheimer's disease.

Authors:  Ana Martinez; Mercedes Alonso; Ana Castro; Concepción Pérez; Francisco J Moreno
Journal:  J Med Chem       Date:  2002-03-14       Impact factor: 7.446

  2 in total
  2 in total

1.  (Z)-3-Benzyl-1,5-benzothia-zepin-4(5H)-one.

Authors:  V Sabari; R Selvakumar; M Bakthadoss; S Aravindhan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-04

2.  (Z)-3-(2-Chloro-benz-yl)-1,5-benzothia-zepin-4(5H)-one.

Authors:  V Sabari; R Selvakumar; M Bakthadoss; S Aravindhan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  2 in total

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