Literature DB >> 22904773

Dibromido(dimethyl sulfoxide-κO)(6-methyl-2,2'-bipyridine-κ(2)N,N')cadmium.

Sadif A Shirvan1, Sara Haydari Dezfuli.   

Abstract

In the title compound, [CdBr(2)(C(11)n class="Species">H(10)N(2))(C(2)H(6)OS)], the Cd(II) atom is five-coordinated in a distorted trigonal-bipyramidal geometry by two N atoms from a 6-methyl-2,2'-bipyridine ligand, one O atom from a dimethyl sulfoxide ligand and two Br atoms. An intra-molecular C-H⋯O hydrogen bond occurs. The crystal structure is stabilized by C-H⋯Br hydrogen bonds and π-π contacts between the pyridine rings [centroid-centroid distances = 3.582 (5) and 3.582 (5) Å].

Entities:  

Year:  2012        PMID: 22904773      PMCID: PMC3414166          DOI: 10.1107/S1600536812033168

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ahmadi et al. (2009 ▶); Ahmadi, Ebadi et al. (2008 ▶); Ahmadi, Kalateh et al. (2008 ▶); Alizadeh et al. (2009 ▶); Amani et al. (2009 ▶); Kalateh et al. (2010 ▶); Newkome et al. (1982 ▶); Onggo et al. (1990 ▶, 2005 ▶); Shirvan & Haydari Dezfuli (2012a ▶,b ▶).

Experimental

Crystal data

[CdBr2(C11H10N2)(C2H6OS)] M = 520.56 Monoclinic, a = 9.0169 (6) Å b = 14.5503 (8) Å c = 14.1473 (8) Å β = 106.561 (5)° V = 1779.11 (18) Å3 Z = 4 Mo Kα radiation μ = 5.83 mm−1 T = 293 K 0.40 × 0.35 × 0.30 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.070, T max = 0.240 14429 measured reflections 3487 independent reflections 2683 reflections with I > 2σ(I) R int = 0.114

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.175 S = 1.05 3487 reflections 181 parameters H-atom parameters constrained Δρmax = 1.35 e Å−3 Δρmin = −1.58 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033168/hy2573sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033168/hy2573Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CdBr2(C11H10N2)(C2H6OS)]F(000) = 1000
Mr = 520.56Dx = 1.944 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 14429 reflections
a = 9.0169 (6) Åθ = 2.1–26.0°
b = 14.5503 (8) ŵ = 5.83 mm1
c = 14.1473 (8) ÅT = 293 K
β = 106.561 (5)°Prism, colorless
V = 1779.11 (18) Å30.40 × 0.35 × 0.30 mm
Z = 4
Bruker APEXII CCD diffractometer3487 independent reflections
Radiation source: fine-focus sealed tube2683 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.114
φ and ω scansθmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −11→11
Tmin = 0.070, Tmax = 0.240k = −17→17
14429 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.1108P)2 + 0.213P] where P = (Fo2 + 2Fc2)/3
3487 reflections(Δ/σ)max = 0.013
181 parametersΔρmax = 1.35 e Å3
0 restraintsΔρmin = −1.58 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0526 (15)0.2406 (9)0.7072 (8)0.095 (3)
H1A0.15710.25890.73930.113*
H1B0.02420.19070.74290.113*
H1C−0.01570.29160.70540.113*
C20.0404 (10)0.2109 (6)0.6057 (7)0.065 (2)
C3−0.0649 (10)0.2488 (7)0.5244 (8)0.076 (3)
H3−0.12610.29790.53280.092*
C4−0.0804 (11)0.2160 (8)0.4338 (9)0.081 (3)
H4−0.15150.24200.37940.098*
C50.0106 (10)0.1432 (7)0.4221 (7)0.067 (2)
H50.00030.11890.35980.080*
C60.1172 (8)0.1066 (5)0.5039 (5)0.0488 (16)
C70.2177 (8)0.0275 (5)0.4957 (5)0.0489 (16)
C80.2191 (11)−0.0105 (7)0.4065 (6)0.068 (2)
H80.15470.01370.34840.081*
C90.3133 (12)−0.0828 (7)0.4019 (8)0.074 (3)
H90.3140−0.10830.34170.089*
C100.4061 (11)−0.1164 (6)0.4886 (8)0.071 (2)
H100.4726−0.16520.48840.085*
C110.4012 (10)−0.0778 (5)0.5767 (7)0.0589 (19)
H110.4628−0.10250.63540.071*
C120.5881 (18)−0.1426 (8)0.9498 (9)0.107 (4)
H12A0.6375−0.18570.91730.129*
H12B0.4818−0.15980.93920.129*
H12C0.6399−0.14261.01930.129*
C130.7939 (16)−0.0279 (16)0.9055 (11)0.135 (6)
H13A0.81210.02550.87060.162*
H13B0.8204−0.08210.87510.162*
H13C0.8565−0.02470.97280.162*
N10.1290 (7)0.1384 (4)0.5931 (5)0.0517 (14)
N20.3111 (7)−0.0063 (4)0.5802 (4)0.0466 (13)
Cd10.31578 (6)0.06461 (3)0.72653 (4)0.0479 (2)
Br10.49691 (15)0.19974 (7)0.79147 (9)0.0879 (4)
Br20.14174 (14)−0.00070 (10)0.82432 (8)0.0931 (4)
O10.5147 (9)−0.0376 (5)0.7936 (5)0.0803 (19)
S10.5972 (3)−0.03236 (15)0.90188 (15)0.0594 (5)
U11U22U33U12U13U23
C10.116 (9)0.091 (7)0.083 (7)0.038 (7)0.039 (7)−0.005 (6)
C20.058 (5)0.066 (5)0.073 (5)0.013 (4)0.023 (4)0.007 (4)
C30.059 (5)0.075 (6)0.100 (8)0.024 (4)0.031 (5)0.027 (6)
C40.058 (5)0.097 (7)0.083 (7)0.013 (5)0.012 (5)0.025 (6)
C50.061 (5)0.078 (6)0.058 (5)−0.001 (4)0.012 (4)0.009 (4)
C60.040 (3)0.061 (4)0.044 (4)−0.008 (3)0.011 (3)0.007 (3)
C70.039 (4)0.057 (4)0.053 (4)−0.008 (3)0.018 (3)−0.002 (3)
C80.059 (5)0.096 (7)0.048 (4)−0.011 (5)0.016 (4)−0.014 (4)
C90.074 (6)0.086 (6)0.069 (6)−0.009 (5)0.030 (5)−0.031 (5)
C100.069 (5)0.057 (5)0.096 (7)−0.006 (4)0.040 (5)−0.026 (5)
C110.061 (5)0.043 (4)0.076 (5)0.002 (3)0.024 (4)0.000 (3)
C120.160 (13)0.088 (8)0.076 (7)−0.006 (8)0.036 (8)0.005 (6)
C130.080 (8)0.24 (2)0.086 (8)0.027 (11)0.026 (7)0.010 (11)
N10.047 (3)0.059 (4)0.050 (3)0.006 (3)0.016 (3)0.004 (3)
N20.048 (3)0.050 (3)0.045 (3)−0.007 (2)0.017 (3)−0.005 (2)
Cd10.0532 (3)0.0472 (3)0.0421 (3)−0.0042 (2)0.0116 (2)−0.0013 (2)
Br10.1072 (9)0.0657 (6)0.0866 (7)−0.0300 (5)0.0210 (6)−0.0116 (5)
Br20.0902 (8)0.1284 (10)0.0644 (6)−0.0346 (7)0.0277 (5)0.0009 (6)
O10.092 (5)0.075 (4)0.057 (3)0.029 (4)−0.006 (3)−0.006 (3)
S10.0658 (12)0.0625 (11)0.0515 (10)0.0095 (9)0.0194 (9)−0.0025 (9)
C1—C21.472 (14)C9—H90.9300
C1—H1A0.9600C10—C111.378 (13)
C1—H1B0.9600C10—H100.9300
C1—H1C0.9600C11—N21.329 (10)
C2—N11.365 (10)C11—H110.9300
C2—C31.381 (13)C12—S11.752 (12)
C3—C41.337 (15)C12—H12A0.9600
C3—H30.9300C12—H12B0.9600
C4—C51.378 (14)C12—H12C0.9600
C4—H40.9300C13—S11.761 (14)
C5—C61.383 (11)C13—H13A0.9600
C5—H50.9300C13—H13B0.9600
C6—N11.320 (10)C13—H13C0.9600
C6—C71.489 (11)N1—Cd12.396 (6)
C7—N21.345 (10)N2—Cd12.303 (6)
C7—C81.380 (11)Cd1—O12.316 (6)
C8—C91.366 (14)Cd1—Br22.5530 (12)
C8—H80.9300Cd1—Br12.5539 (11)
C9—C101.364 (15)O1—S11.502 (6)
C2—C1—H1A109.5N2—C11—H11119.0
C2—C1—H1B109.5C10—C11—H11119.0
H1A—C1—H1B109.5S1—C12—H12A109.5
C2—C1—H1C109.5S1—C12—H12B109.5
H1A—C1—H1C109.5H12A—C12—H12B109.5
H1B—C1—H1C109.5S1—C12—H12C109.5
N1—C2—C3119.2 (9)H12A—C12—H12C109.5
N1—C2—C1118.1 (8)H12B—C12—H12C109.5
C3—C2—C1122.5 (9)S1—C13—H13A109.5
C4—C3—C2121.0 (9)S1—C13—H13B109.5
C4—C3—H3119.5H13A—C13—H13B109.5
C2—C3—H3119.5S1—C13—H13C109.5
C3—C4—C5119.1 (9)H13A—C13—H13C109.5
C3—C4—H4120.5H13B—C13—H13C109.5
C5—C4—H4120.5C6—N1—C2120.4 (7)
C4—C5—C6119.5 (9)C6—N1—Cd1116.3 (5)
C4—C5—H5120.3C2—N1—Cd1123.3 (6)
C6—C5—H5120.3C11—N2—C7119.2 (7)
N1—C6—C5120.7 (8)C11—N2—Cd1122.0 (6)
N1—C6—C7117.4 (6)C7—N2—Cd1118.8 (5)
C5—C6—C7121.8 (7)N2—Cd1—O183.9 (2)
N2—C7—C8119.9 (8)N2—Cd1—N170.4 (2)
N2—C7—C6117.0 (6)O1—Cd1—N1154.1 (2)
C8—C7—C6123.0 (8)N2—Cd1—Br2117.63 (15)
C9—C8—C7121.4 (9)O1—Cd1—Br293.6 (2)
C9—C8—H8119.3N1—Cd1—Br2101.02 (15)
C7—C8—H8119.3N2—Cd1—Br1120.97 (14)
C10—C9—C8117.6 (8)O1—Cd1—Br190.3 (2)
C10—C9—H9121.2N1—Cd1—Br199.92 (16)
C8—C9—H9121.2Br2—Cd1—Br1121.36 (4)
C9—C10—C11119.9 (9)S1—O1—Cd1119.1 (4)
C9—C10—H10120.1O1—S1—C12106.5 (5)
C11—C10—H10120.1O1—S1—C13103.5 (6)
N2—C11—C10122.0 (9)C12—S1—C13100.4 (9)
N1—C2—C3—C4−0.5 (14)C6—C7—N2—C11179.0 (6)
C1—C2—C3—C4−175.4 (11)C8—C7—N2—Cd1176.3 (6)
C2—C3—C4—C50.1 (16)C6—C7—N2—Cd1−3.1 (8)
C3—C4—C5—C6−1.0 (15)C11—N2—Cd1—O13.9 (6)
C4—C5—C6—N12.4 (13)C7—N2—Cd1—O1−174.0 (5)
C4—C5—C6—C7179.6 (8)C11—N2—Cd1—N1−179.4 (6)
N1—C6—C7—N21.1 (10)C7—N2—Cd1—N12.7 (5)
C5—C6—C7—N2−176.2 (7)C11—N2—Cd1—Br2−87.0 (6)
N1—C6—C7—C8−178.3 (7)C7—N2—Cd1—Br295.1 (5)
C5—C6—C7—C84.4 (11)C11—N2—Cd1—Br190.6 (6)
N2—C7—C8—C90.5 (12)C7—N2—Cd1—Br1−87.3 (5)
C6—C7—C8—C9179.8 (8)C6—N1—Cd1—N2−2.1 (5)
C7—C8—C9—C100.0 (14)C2—N1—Cd1—N2179.5 (7)
C8—C9—C10—C110.7 (14)C6—N1—Cd1—O15.5 (9)
C9—C10—C11—N2−1.9 (13)C2—N1—Cd1—O1−173.0 (7)
C5—C6—N1—C2−2.8 (11)C6—N1—Cd1—Br2−117.7 (5)
C7—C6—N1—C2179.8 (7)C2—N1—Cd1—Br263.9 (6)
C5—C6—N1—Cd1178.6 (6)C6—N1—Cd1—Br1117.4 (5)
C7—C6—N1—Cd11.3 (8)C2—N1—Cd1—Br1−61.1 (6)
C3—C2—N1—C61.9 (12)N2—Cd1—O1—S1177.1 (5)
C1—C2—N1—C6177.0 (9)N1—Cd1—O1—S1169.9 (4)
C3—C2—N1—Cd1−179.7 (6)Br2—Cd1—O1—S1−65.5 (5)
C1—C2—N1—Cd1−4.6 (12)Br1—Cd1—O1—S155.9 (5)
C10—C11—N2—C72.4 (11)Cd1—O1—S1—C12126.0 (7)
C10—C11—N2—Cd1−175.5 (6)Cd1—O1—S1—C13−128.7 (9)
C8—C7—N2—C11−1.6 (10)
D—H···AD—HH···AD···AD—H···A
C11—H11···O10.932.353.003 (12)127
C13—H13C···Br2i0.962.893.722 (15)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C11—H11⋯O10.932.353.003 (12)127
C13—H13C⋯Br2i 0.962.893.722 (15)146

Symmetry code: (i) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tetra-kis(6-methyl-2,2'-bipyridine)-1κN,N';2κN,N';3κN,N';4κN,N'-tetra-μ-nitrato-1:2κO:O';2:3κO:O',O'';2:3κO,O':O'';3:4κO:O'-tetra-nitrato-1κO,O';4κO,O'-tetra-lead(II).

Authors:  Roya Ahmadi; Khadijeh Kalateh; Robabeh Alizadeh; Zeinab Khoshtarkib; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-05

3.  Dibromido(6,6'-dimethyl-2,2'-bipyridine-κN,N')zinc(II).

Authors:  Robabeh Alizadeh; Zeinab Khoshtarkib; Katayoon Chegeni; Amin Ebadi; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-07

4.  Dichlorido(6-methyl-2,2'-bipyridine-κN,N')mercury(II).

Authors:  Roya Ahmadi; Amin Ebadi; Khadijeh Kalateh; Ali Norouzi; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-15

5.  Dichlorido(6-methyl-2,2'-bipyridine-κN,N')zinc(II).

Authors:  Roya Ahmadi; Khadijeh Kalateh; Amin Ebadi; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

6.  Dibromido(6-methyl-2,2'-bipyridine-κN,N')zinc(II).

Authors:  Khadijeh Kalateh; Roya Ahmadi; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11

7.  Dibromido(4,4'-dimethyl-2,2'-bipyridine-κ(2)N,N')(dimethyl sulfoxide-κO)cadmium.

Authors:  Sadif A Shirvan; Sara Haydari Dezfuli
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

8.  catena-Poly[[(5,5'-dimethyl-2,2'-bipyridine-κ(2)N,N')cadmium]-di-μ-bromido].

Authors:  Sadif A Shirvan; Sara Haydari Dezfuli
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31
  8 in total
  3 in total

1.  Dichlorido(6-methyl-2,2'-bipyridine-κ(2)N,N')cobalt(II).

Authors:  Niloufar Akbarzadeh Torbati; Ali Reza Rezvani; Hamideh Saravani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

2.  Dibromido(6-methyl-2,2'-bipyridine-κ(2) N,N')cobalt(II).

Authors:  Sadif A Shirvan; Sara Haydari Dezfuli; Fereydoon Khazali; Ali Borsalani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-07

3.  Trichlorido(6-methyl-2,2'-bipyridine-κ(2)N,N')(dimethyl-sulfoxide-κO)indium(III).

Authors:  Sadif A Shirvan; Sara Haydari Dezfuli; Elyas Golabi; Mohammad Amin Gholamzadeh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06
  3 in total

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