Literature DB >> 22899571

A new paradigm of interactive artery/vein separation in noncontrast pulmonary CT imaging using multiscale topomorphologic opening.

Zhiyun Gao1, Randall W Grout, Colin Holtze, Eric A Hoffman, Punam K Saha.   

Abstract

Distinguishing pulmonary arterial and venous (A/V) trees via in vivo imaging is a critical first step in the quantification of vascular geometry for the purpose of diagnosing several pulmonary diseases and to develop new image-based phenotypes. A multiscale topomorphologic opening (MSTMO) algorithm has recently been developed in our laboratory for separating A/V trees via noncontrast pulmonary human CT imaging. The method starts with two sets of seeds-one for each of A/V trees and combines fuzzy distance transform and fuzzy connectivity in conjunction with several morphological operations leading to locally adaptive iterative multiscale opening of two mutually conjoined structures. In this paper, we introduce the methods for handling "local update" and "separators" into our previous theoretical formulation and incorporate the algorithm into an effective graphical user interface (GUI). Results of a comprehensive evaluative study assessing both accuracy and reproducibility of the method under the new setup are presented and also, the effectiveness of the GUI-based system toward improving A/V separation results is examined. Accuracy of the method has been evaluated using mathematical phantoms, CT images of contrast-separated pulmonary A/V casting of a pig's lung and noncontrast pulmonary human CT imaging. The method has achieved 99% true A/V labeling in the cast phantom and, almost, 92-94% true labeling in human lung data. Reproducibility of the method has been evaluated using multiuser A/V separation in human CT data along with contrast-enhanced CT images of a pig's lung at different positive end-expiratory pressures (PEEPs). The method has achieved, almost, 92-98% agreements in multiuser A/V labeling with ICC for A/V measures being over 0.96-0.99. Effectiveness of the GUI-based method has been evaluated on human data in terms of improvements of accuracy of A/V separation results and results have shown 8-22% improvements in true A/V labeling. Both qualitative and quantitative results found are very promising.

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Mesh:

Year:  2012        PMID: 22899571      PMCID: PMC4294416          DOI: 10.1109/TBME.2012.2212894

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  9 in total

1.  Artery-vein separation via MRA--an image processing approach.

Authors:  T Lei; J K Udupa; P K Saha; D Odhner
Journal:  IEEE Trans Med Imaging       Date:  2001-08       Impact factor: 10.048

2.  Level-set-based artery-vein separation in blood pool agent CE-MR angiograms.

Authors:  Cornelis M van Bemmel; Luuk J Spreeuwers; Max A Viergever; Wiro J Niessen
Journal:  IEEE Trans Med Imaging       Date:  2003-10       Impact factor: 10.048

3.  Low-dose high-resolution CT of lung parenchyma.

Authors:  C V Zwirewich; J R Mayo; N L Müller
Journal:  Radiology       Date:  1991-08       Impact factor: 11.105

4.  Live-cell microscopy - tips and tools.

Authors:  Melanie M Frigault; Judith Lacoste; Jody L Swift; Claire M Brown
Journal:  J Cell Sci       Date:  2009-03-15       Impact factor: 5.285

5.  Iterative Relative Fuzzy Connectedness for Multiple Objects with Multiple Seeds.

Authors:  Krzysztof Chris Ciesielski; Jayaram K Udupa; Punam K Saha; Ying Zhuge
Journal:  Comput Vis Image Underst       Date:  2007-09       Impact factor: 3.876

6.  Low-dose CT of the lungs: preliminary observations.

Authors:  D P Naidich; C H Marshall; C Gribbin; R S Arams; D I McCauley
Journal:  Radiology       Date:  1990-06       Impact factor: 11.105

7.  Low-dose high-resolution CT of the chest in children and young adults: dose, cooperation, artifact incidence, and image quality.

Authors:  J Lucaya; J Piqueras; P García-Peña; G Enríquez; M García-Macías; J Sotil
Journal:  AJR Am J Roentgenol       Date:  2000-10       Impact factor: 3.959

8.  Topomorphologic separation of fused isointensity objects via multiscale opening: separating arteries and veins in 3-D pulmonary CT.

Authors:  Punam K Saha; Zhiyun Gao; Sara K Alford; Milan Sonka; Eric A Hoffman
Journal:  IEEE Trans Med Imaging       Date:  2010-03       Impact factor: 10.048

9.  Measurement of trabecular bone thickness in the limited resolution regime of in vivo MRI by fuzzy distance transform.

Authors:  Punam K Saha; Felix W Wehrli
Journal:  IEEE Trans Med Imaging       Date:  2004-01       Impact factor: 10.048

  9 in total
  7 in total

1.  Multiscale Opening of Conjoined Fuzzy Objects: Theory and Applications.

Authors:  Punam K Saha; Subhadip Basu; Eric A Hoffman
Journal:  IEEE Trans Fuzzy Syst       Date:  2015-11-20       Impact factor: 12.029

Review 2.  Pulmonary CT and MRI phenotypes that help explain chronic pulmonary obstruction disease pathophysiology and outcomes.

Authors:  Eric A Hoffman; David A Lynch; R Graham Barr; Edwin J R van Beek; Grace Parraga
Journal:  J Magn Reson Imaging       Date:  2015-07-22       Impact factor: 4.813

3.  Pulmonary Artery-Vein Classification in CT Images Using Deep Learning.

Authors:  Pietro Nardelli; Daniel Jimenez-Carretero; David Bermejo-Pelaez; George R Washko; Farbod N Rahaghi; Maria J Ledesma-Carbayo; Raul San Jose Estepar
Journal:  IEEE Trans Med Imaging       Date:  2018-05-04       Impact factor: 10.048

4.  Automated identification of pulmonary arteries and veins depicted in non-contrast chest CT scans.

Authors:  Jiantao Pu; Joseph K Leader; Jacob Sechrist; Cameron A Beeche; Jatin P Singh; Iclal K Ocak; Michael G Risbano
Journal:  Med Image Anal       Date:  2022-01-12       Impact factor: 8.545

5.  Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms.

Authors:  Daniel Jimenez-Carretero; Raul San Jose Estepar; Mario Diaz Cacio; Maria J Ledesma-Carbayo
Journal:  PLoS One       Date:  2016-01-05       Impact factor: 3.240

6.  Quantitative 3-D morphometric analysis of individual dendritic spines.

Authors:  Subhadip Basu; Punam Kumar Saha; Matylda Roszkowska; Marta Magnowska; Ewa Baczynska; Nirmal Das; Dariusz Plewczynski; Jakub Wlodarczyk
Journal:  Sci Rep       Date:  2018-02-23       Impact factor: 4.379

7.  A Pulmonary Artery-Vein Separation Algorithm Based on the Relationship between Subtrees Information.

Authors:  Kun Yu; Ziming Zhang; Xiaoshuo Li; Pan Liu; Qinghua Zhou; Wenjun Tan
Journal:  J Healthc Eng       Date:  2021-06-09       Impact factor: 2.682

  7 in total

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