Literature DB >> 35066393

Automated identification of pulmonary arteries and veins depicted in non-contrast chest CT scans.

Jiantao Pu1, Joseph K Leader2, Jacob Sechrist2, Cameron A Beeche2, Jatin P Singh2, Iclal K Ocak2, Michael G Risbano3.   

Abstract

We present a novel integrative computerized solution to automatically identify and differentiate pulmonary arteries and veins depicted on chest computed tomography (CT) without iodinated contrast agents. We first identified the central extrapulmonary arteries and veins using a convolutional neural network (CNN) model. Then, a computational differential geometry method was used to automatically identify the tubular-like structures in the lungs with high densities, which we believe are the intrapulmonary vessels. Beginning with the extrapulmonary arteries and veins, we progressively traced the intrapulmonary vessels by following their skeletons and differentiated them into arteries and veins. Instead of manually labeling the numerous arteries and veins in the lungs for machine learning, this integrative strategy limits the manual effort only to the large extrapulmonary vessels. We used a dataset consisting of 120 chest CT scans acquired on different subjects using various protocols to develop, train, and test the algorithms. Our experiments on an independent test set (n = 15) showed promising performance. The computer algorithm achieved a sensitivity of ∼98% in labeling the pulmonary artery and vein branches when compared with a human expert's results, demonstrating the feasibility of our computerized solution in pulmonary artery/vein labeling.
Copyright © 2022 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Artery; Computed tomography; Deep learning; Differential geometry; Vein

Mesh:

Year:  2022        PMID: 35066393      PMCID: PMC8901546          DOI: 10.1016/j.media.2022.102367

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  47 in total

1.  Determination of lung segments in computed tomography images using the Euclidean distance to the pulmonary artery.

Authors:  Christina Stoecker; Stefan Welter; Jan H Moltz; Bianca Lassen; Jan-Martin Kuhnigk; Stefan Krass; Heinz-Otto Peitgen
Journal:  Med Phys       Date:  2013-09       Impact factor: 4.071

2.  Potential of deep learning in assessing pneumoconiosis depicted on digital chest radiography.

Authors:  Xiaohua Wang; Juezhao Yu; Qiao Zhu; Shuqiang Li; Zanmei Zhao; Bohan Yang; Jiantao Pu
Journal:  Occup Environ Med       Date:  2020-05-29       Impact factor: 4.402

3.  Automated integer programming based separation of arteries and veins from thoracic CT images.

Authors:  Christian Payer; Michael Pienn; Zoltán Bálint; Alexander Shekhovtsov; Emina Talakic; Eszter Nagy; Andrea Olschewski; Horst Olschewski; Martin Urschler
Journal:  Med Image Anal       Date:  2016-05-06       Impact factor: 8.545

4.  UNet++: A Nested U-Net Architecture for Medical Image Segmentation.

Authors:  Zongwei Zhou; Md Mahfuzur Rahman Siddiquee; Nima Tajbakhsh; Jianming Liang
Journal:  Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018)       Date:  2018-09-20

5.  The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans.

Authors:  Samuel G Armato; Geoffrey McLennan; Luc Bidaut; Michael F McNitt-Gray; Charles R Meyer; Anthony P Reeves; Binsheng Zhao; Denise R Aberle; Claudia I Henschke; Eric A Hoffman; Ella A Kazerooni; Heber MacMahon; Edwin J R Van Beeke; David Yankelevitz; Alberto M Biancardi; Peyton H Bland; Matthew S Brown; Roger M Engelmann; Gary E Laderach; Daniel Max; Richard C Pais; David P Y Qing; Rachael Y Roberts; Amanda R Smith; Adam Starkey; Poonam Batrah; Philip Caligiuri; Ali Farooqi; Gregory W Gladish; C Matilda Jude; Reginald F Munden; Iva Petkovska; Leslie E Quint; Lawrence H Schwartz; Baskaran Sundaram; Lori E Dodd; Charles Fenimore; David Gur; Nicholas Petrick; John Freymann; Justin Kirby; Brian Hughes; Alessi Vande Casteele; Sangeeta Gupte; Maha Sallamm; Michael D Heath; Michael H Kuhn; Ekta Dharaiya; Richard Burns; David S Fryd; Marcos Salganicoff; Vikram Anand; Uri Shreter; Stephen Vastagh; Barbara Y Croft
Journal:  Med Phys       Date:  2011-02       Impact factor: 4.071

Review 6.  Pulmonary arteriovenous malformations.

Authors:  Sreeshma Tellapuri; Harold S Park; Sanjeeva P Kalva
Journal:  Int J Cardiovasc Imaging       Date:  2018-11-01       Impact factor: 2.357

7.  End-to-end lung cancer screening with three-dimensional deep learning on low-dose chest computed tomography.

Authors:  Diego Ardila; Atilla P Kiraly; Sujeeth Bharadwaj; Bokyung Choi; Joshua J Reicher; Lily Peng; Daniel Tse; Mozziyar Etemadi; Wenxing Ye; Greg Corrado; David P Naidich; Shravya Shetty
Journal:  Nat Med       Date:  2019-05-20       Impact factor: 53.440

8.  U-Net: deep learning for cell counting, detection, and morphometry.

Authors:  Thorsten Falk; Dominic Mai; Robert Bensch; Özgün Çiçek; Ahmed Abdulkadir; Yassine Marrakchi; Anton Böhm; Jan Deubner; Zoe Jäckel; Katharina Seiwald; Alexander Dovzhenko; Olaf Tietz; Cristina Dal Bosco; Sean Walsh; Deniz Saltukoglu; Tuan Leng Tay; Marco Prinz; Klaus Palme; Matias Simons; Ilka Diester; Thomas Brox; Olaf Ronneberger
Journal:  Nat Methods       Date:  2018-12-17       Impact factor: 28.547

9.  Diagnosis and management of pulmonary arteriovenous malformations.

Authors:  J Papagiannis; S Apostolopoulou; Ge Sarris; S Rammos
Journal:  Images Paediatr Cardiol       Date:  2002-01

10.  Dense U-net Based on Patch-Based Learning for Retinal Vessel Segmentation.

Authors:  Chang Wang; Zongya Zhao; Qiongqiong Ren; Yongtao Xu; Yi Yu
Journal:  Entropy (Basel)       Date:  2019-02-12       Impact factor: 2.524

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