Literature DB >> 22897252

Crystal lattice properties fully determine short-range interaction parameters for alkali and halide ions.

Albert H Mao1, Rohit V Pappu.   

Abstract

Accurate models of alkali and halide ions in aqueous solution are necessary for computer simulations of a broad variety of systems. Previous efforts to develop ion force fields have generally focused on reproducing experimental measurements of aqueous solution properties such as hydration free energies and ion-water distribution functions. This dependency limits transferability of the resulting parameters because of the variety and known limitations of water models. We present a solvent-independent approach to calibrating ion parameters based exclusively on crystal lattice properties. Our procedure relies on minimization of lattice sums to calculate lattice energies and interionic distances instead of equilibrium ensemble simulations of dense fluids. The gain in computational efficiency enables simultaneous optimization of all parameters for Li+, Na+, K+, Rb+, Cs+, F-, Cl-, Br-, and I- subject to constraints that enforce consistency with periodic table trends. We demonstrate the method by presenting lattice-derived parameters for the primitive model and the Lennard-Jones model with Lorentz-Berthelot mixing rules. The resulting parameters successfully reproduce the lattice properties used to derive them and are free from the influence of any water model. To assess the transferability of the Lennard-Jones parameters to aqueous systems, we used them to estimate hydration free energies and found that the results were in quantitative agreement with experimentally measured values. These lattice-derived parameters are applicable in simulations where coupling of ion parameters to a particular solvent model is undesirable. The simplicity and low computational demands of the calibration procedure make it suitable for parametrization of crystallizable ions in a variety of force fields.

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Year:  2012        PMID: 22897252     DOI: 10.1063/1.4742068

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  18 in total

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Journal:  J Chem Phys       Date:  2015-11-21       Impact factor: 3.488

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Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

Review 3.  Metal Ion Modeling Using Classical Mechanics.

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Authors:  Alexander G Kozlov; Elizabeth Weiland; Anuradha Mittal; Vince Waldman; Edwin Antony; Nicole Fazio; Rohit V Pappu; Timothy M Lohman
Journal:  J Mol Biol       Date:  2015-01-03       Impact factor: 5.469

6.  Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model.

Authors:  Marie L Laury; Lee-Ping Wang; Vijay S Pande; Teresa Head-Gordon; Jay W Ponder
Journal:  J Phys Chem B       Date:  2015-02-26       Impact factor: 2.991

7.  Sequence Determinants of the Conformational Properties of an Intrinsically Disordered Protein Prior to and upon Multisite Phosphorylation.

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8.  Parametrization of Trivalent and Tetravalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models.

Authors:  Zhen Li; Lin Frank Song; Pengfei Li; Kenneth M Merz
Journal:  J Chem Theory Comput       Date:  2021-04-01       Impact factor: 6.006

9.  Control of transcriptional activity by design of charge patterning in the intrinsically disordered RAM region of the Notch receptor.

Authors:  Kathryn P Sherry; Rahul K Das; Rohit V Pappu; Doug Barrick
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-12       Impact factor: 11.205

10.  Differing biophysical properties underpin the unique signaling potentials within the plant phytochrome photoreceptor families.

Authors:  E Sethe Burgie; Zachary T K Gannam; Katrice E McLoughlin; Christopher D Sherman; Alex S Holehouse; Robert J Stankey; Richard D Vierstra
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-01       Impact factor: 11.205

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