Literature DB >> 34039713

Differing biophysical properties underpin the unique signaling potentials within the plant phytochrome photoreceptor families.

E Sethe Burgie1,2, Zachary T K Gannam1, Katrice E McLoughlin1, Christopher D Sherman1, Alex S Holehouse3,4, Robert J Stankey2, Richard D Vierstra5,2.   

Abstract

Many aspects of photoperception by plants and microorganisms are initiated by the phytochrome (Phy) family of photoreceptors that detect light through interconversion between red light- (Pr) and far-red light-absorbing (Pfr) states. Plants synthesize a small family of Phy isoforms (PhyA to PhyE) that collectively regulate photomorphogenesis and temperature perception through redundant and unique actions. While the selective roles of these isoforms have been partially attributed to their differing abundances, expression patterns, affinities for downstream partners, and turnover rates, we show here from analysis of recombinant Arabidopsis chromoproteins that the Phy isoforms also display distinct biophysical properties. Included are a hypsochromic shift in the Pr absorption for PhyC and varying rates of Pfr to Pr thermal reversion, part of which can be attributed to the core photosensory module in each. Most strikingly, PhyB combines strong temperature dependence of thermal reversion with an order-of-magnitude faster rate to likely serve as the main physiological thermosensor, whereby thermal reversion competes with photoconversion. In addition, comparisons of Pfr occupancies for PhyA and PhyB under a range of red- and white-light fluence rates imply that low-light environments are effectively sensed by PhyA, while high-light environments, such as full sun, are effectively sensed by PhyB. Parallel analyses of the Phy isoforms from potato and maize showed that the unique features within the Arabidopsis family are conserved, thus indicating that the distinct biophysical properties among plant Phy isoforms emerged early in Phy evolution, likely to enable full interrogation of their light and temperature environments.

Entities:  

Keywords:  photochemistry; photoreceptor; phytochrome; temperature sensing; thermal reversion

Mesh:

Substances:

Year:  2021        PMID: 34039713      PMCID: PMC8179155          DOI: 10.1073/pnas.2105649118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  69 in total

1.  Arabidopsis phytochromes C and E have different spectral characteristics from those of phytochromes A and B.

Authors:  K Eichenberg; I Bäurle; N Paulo; R A Sharrock; W Rüdiger; E Schäfer
Journal:  FEBS Lett       Date:  2000-03-24       Impact factor: 4.124

2.  Dimers of the N-terminal domain of phytochrome B are functional in the nucleus.

Authors:  Tomonao Matsushita; Nobuyoshi Mochizuki; Akira Nagatani
Journal:  Nature       Date:  2003-07-31       Impact factor: 49.962

Review 3.  Evolutionary studies illuminate the structural-functional model of plant phytochromes.

Authors:  Sarah Mathews
Journal:  Plant Cell       Date:  2010-01-29       Impact factor: 11.277

4.  Characterization of regions within the N-terminal 6-kilodalton domain of phytochrome A that modulate its biological activity.

Authors:  E T Jordan; J M Marita; R C Clough; R D Vierstra
Journal:  Plant Physiol       Date:  1997-10       Impact factor: 8.340

5.  IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.

Authors:  Zsuzsanna Dosztányi; Veronika Csizmok; Peter Tompa; István Simon
Journal:  Bioinformatics       Date:  2005-06-14       Impact factor: 6.937

6.  Red/green cyanobacteriochromes: sensors of color and power.

Authors:  Nathan C Rockwell; Shelley S Martin; J Clark Lagarias
Journal:  Biochemistry       Date:  2012-11-21       Impact factor: 3.162

7.  Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors.

Authors:  Baruch Karniol; Jeremiah R Wagner; Joseph M Walker; Richard D Vierstra
Journal:  Biochem J       Date:  2005-11-15       Impact factor: 3.857

8.  The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE.

Authors:  T Clack; S Mathews; R A Sharrock
Journal:  Plant Mol Biol       Date:  1994-06       Impact factor: 4.076

9.  Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion.

Authors:  E Sethe Burgie; Junrui Zhang; Richard D Vierstra
Journal:  Structure       Date:  2016-02-04       Impact factor: 5.006

10.  Structure-guided engineering of plant phytochrome B with altered photochemistry and light signaling.

Authors:  Junrui Zhang; Robert J Stankey; Richard D Vierstra
Journal:  Plant Physiol       Date:  2013-01-15       Impact factor: 8.340

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  2 in total

1.  Plant phytochrome B is an asymmetric dimer with unique signalling potential.

Authors:  Hua Li; E Sethe Burgie; Zachary T K Gannam; Huilin Li; Richard D Vierstra
Journal:  Nature       Date:  2022-03-30       Impact factor: 49.962

2.  Hysteresis in PHYTOCHROME-INTERACTING FACTOR 4 and EARLY-FLOWERING 3 dynamics dominates warm daytime memory in Arabidopsis.

Authors:  Germán Murcia; Cristina Nieto; Romina Sellaro; Salomé Prat; Jorge J Casal
Journal:  Plant Cell       Date:  2022-05-24       Impact factor: 12.085

  2 in total

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