Literature DB >> 22896804

Dissecting neural function using targeted genome engineering technologies.

Patrick D Hsu1, Feng Zhang.   

Abstract

Designer DNA-binding proteins based on transcriptional activator-like effectors (TALEs) and zinc finger proteins (ZFPs) are easily tailored to recognize specific DNA sequences in a modular manner. They can be engineered to generate tools for targeted genome perturbation. Here, we review recent advances in these versatile technologies with a focus on designer nucleases for highly precise, efficient, and scarless gene modification. By generating double stranded breaks and stimulating cellular DNA repair pathways, TALE and ZF nucleases have the ability to modify the endogenous genome. We also discuss current applications of designer DNA-binding proteins in synthetic biology and disease modeling, novel effector domains for genetic and epigenetic regulation, and finally perspectives on using customizable DNA-binding proteins for interrogating neural function.

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Substances:

Year:  2012        PMID: 22896804      PMCID: PMC3419454          DOI: 10.1021/cn300089k

Source DB:  PubMed          Journal:  ACS Chem Neurosci        ISSN: 1948-7193            Impact factor:   4.418


  58 in total

1.  Targeting DNA double-strand breaks with TAL effector nucleases.

Authors:  Michelle Christian; Tomas Cermak; Erin L Doyle; Clarice Schmidt; Feng Zhang; Aaron Hummel; Adam J Bogdanove; Daniel F Voytas
Journal:  Genetics       Date:  2010-07-26       Impact factor: 4.562

Review 2.  Xanthomonas AvrBs3 family-type III effectors: discovery and function.

Authors:  Jens Boch; Ulla Bonas
Journal:  Annu Rev Phytopathol       Date:  2010       Impact factor: 13.078

3.  Generating knockout rats by transposon mutagenesis in spermatogonial stem cells.

Authors:  Zsuzsanna Izsvák; Janine Fröhlich; Ivana Grabundzija; James R Shirley; Heather M Powell; Karen M Chapman; Zoltán Ivics; F Kent Hamra
Journal:  Nat Methods       Date:  2010-05-16       Impact factor: 28.547

4.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

5.  Targeted genome modification in mice using zinc-finger nucleases.

Authors:  Iara D Carbery; Diana Ji; Anne Harrington; Victoria Brown; Edward J Weinstein; Lucy Liaw; Xiaoxia Cui
Journal:  Genetics       Date:  2010-07-13       Impact factor: 4.562

6.  Production of p53 gene knockout rats by homologous recombination in embryonic stem cells.

Authors:  Chang Tong; Ping Li; Nancy L Wu; Youzhen Yan; Qi-Long Ying
Journal:  Nature       Date:  2010-08-11       Impact factor: 49.962

Review 7.  Zinc finger nucleases as tools to understand and treat human diseases.

Authors:  David Davis; David Stokoe
Journal:  BMC Med       Date:  2010-07-01       Impact factor: 8.775

8.  Breaking the code of DNA binding specificity of TAL-type III effectors.

Authors:  Jens Boch; Heidi Scholze; Sebastian Schornack; Angelika Landgraf; Simone Hahn; Sabine Kay; Thomas Lahaye; Anja Nickstadt; Ulla Bonas
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

9.  Germline competent embryonic stem cells derived from rat blastocysts.

Authors:  Ping Li; Chang Tong; Ruty Mehrian-Shai; Li Jia; Nancy Wu; Youzhen Yan; Robert E Maxson; Eric N Schulze; Houyan Song; Chih-Lin Hsieh; Martin F Pera; Qi-Long Ying
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

10.  Capture of authentic embryonic stem cells from rat blastocysts.

Authors:  Mia Buehr; Stephen Meek; Kate Blair; Jian Yang; Janice Ure; Jose Silva; Renee McLay; John Hall; Qi-Long Ying; Austin Smith
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

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  12 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

Review 2.  DNA methylation and its implications and accessibility for neuropsychiatric therapeutics.

Authors:  Jeremy J Day; Andrew J Kennedy; J David Sweatt
Journal:  Annu Rev Pharmacol Toxicol       Date:  2014-10-17       Impact factor: 13.820

3.  Genome engineering using the CRISPR-Cas9 system.

Authors:  F Ann Ran; Patrick D Hsu; Jason Wright; Vineeta Agarwala; David A Scott; Feng Zhang
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

4.  DNA targeting specificity of RNA-guided Cas9 nucleases.

Authors:  Patrick D Hsu; David A Scott; Joshua A Weinstein; F Ann Ran; Silvana Konermann; Vineeta Agarwala; Yinqing Li; Eli J Fine; Xuebing Wu; Ophir Shalem; Thomas J Cradick; Luciano A Marraffini; Gang Bao; Feng Zhang
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

5.  A nanobody-based system using fluorescent proteins as scaffolds for cell-specific gene manipulation.

Authors:  Jonathan C Y Tang; Tamas Szikra; Yevgenia Kozorovitskiy; Miguel Teixiera; Bernardo L Sabatini; Botond Roska; Constance L Cepko
Journal:  Cell       Date:  2013-08-15       Impact factor: 41.582

Review 6.  Optimizing neuronal differentiation from induced pluripotent stem cells to model ASD.

Authors:  Dae-Sung Kim; P Joel Ross; Kirill Zaslavsky; James Ellis
Journal:  Front Cell Neurosci       Date:  2014-04-11       Impact factor: 5.505

Review 7.  Genome-editing technologies and their potential application in horticultural crop breeding.

Authors:  Jin-Song Xiong; Jing Ding; Yi Li
Journal:  Hortic Res       Date:  2015-05-13       Impact factor: 6.793

8.  Schizophrenia genetics: building the foundations of the future.

Authors:  Katherine E Tansey; Michael J Owen; Michael C O'Donovan
Journal:  Schizophr Bull       Date:  2014-11-13       Impact factor: 9.306

Review 9.  CRISPR Genome Engineering for Human Pluripotent Stem Cell Research.

Authors:  Somali Chaterji; Eun Hyun Ahn; Deok-Ho Kim
Journal:  Theranostics       Date:  2017-10-07       Impact factor: 11.556

10.  Efficient Production and Identification of CRISPR/Cas9-generated Gene Knockouts in the Model System Danio rerio.

Authors:  Erin L Sorlien; Mary A Witucki; Joseph Ogas
Journal:  J Vis Exp       Date:  2018-08-28       Impact factor: 1.355

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