Literature DB >> 22893234

Multivariate analysis of ToF-SIMS data from multicomponent systems: the why, when, and how.

Daniel J Graham1, David G Castner.   

Abstract

The use of multivariate analysis (MVA) methods in the processing of time-of-flight secondary ion mass spectrometry (ToF-SIMS) data has become increasingly more common. MVA presents a powerful set of tools to aid the user in processing data from complex, multicomponent surfaces such as biological materials and biosensors. When properly used, MVA can help the user identify the major sources of differences within a sample or between samples, determine where certain compounds exist on a sample, or verify the presence of compounds that have been engineered into the surface. Of all the MVA methods, principal component analysis (PCA) is the most commonly used and forms an excellent starting point for the application of many of the other methods employed to process ToF-SIMS data. Herein we discuss the application of PCA and other MVA methods to multicomponent ToF-SIMS data and provide guidelines on their application and use.

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Year:  2012        PMID: 22893234      PMCID: PMC3801192          DOI: 10.1007/s13758-012-0049-3

Source DB:  PubMed          Journal:  Biointerphases        ISSN: 1559-4106            Impact factor:   2.456


  64 in total

1.  Multivariate statistical analysis of three-spatial-dimension TOF-SIMS raw data sets.

Authors:  V S Smentkowski; S G Ostrowski; E Braunstein; M R Keenan; J A Ohlhausen; P G Kotula
Journal:  Anal Chem       Date:  2007-09-14       Impact factor: 6.986

2.  Investigating the relationship between surface chemistry and endothelial cell growth: partial least-squares regression of the static secondary ion mass spectra of oxygen-containing plasma-deposited films.

Authors:  A Chilkoti; A E Schmierer; V H Pérez-Luna; B D Ratner
Journal:  Anal Chem       Date:  1995-09-01       Impact factor: 6.986

3.  Static secondary ion mass spectrometric investigation of the surface chemistry of organic plasma-deposited films created from oxygen-containing precursors. 3. Multivariate statistical modeling.

Authors:  A Chilkoti; B D Ratner; D Briggs
Journal:  Anal Chem       Date:  1993-07-01       Impact factor: 6.986

4.  Lipid mapping of colonic mucosa by cluster TOF-SIMS imaging and multivariate analysis in cftr knockout mice.

Authors:  Marc Brulet; Alexandre Seyer; Aleksander Edelman; Alain Brunelle; Janine Fritsch; Mario Ollero; Olivier Laprévote
Journal:  J Lipid Res       Date:  2010-07-08       Impact factor: 5.922

5.  Compositional mapping of the surface and interior of mammalian cells at submicrometer resolution.

Authors:  Christopher Szakal; Kedar Narayan; Jing Fu; Jonathan Lefman; Sriram Subramaniam
Journal:  Anal Chem       Date:  2011-01-26       Impact factor: 6.986

6.  Polymer surface functionalities that control human embryoid body cell adhesion revealed by high throughput surface characterization of combinatorial material microarrays.

Authors:  Jing Yang; Ying Mei; Andrew L Hook; Michael Taylor; Andrew J Urquhart; Said R Bogatyrev; Robert Langer; Daniel G Anderson; Martyn C Davies; Morgan R Alexander
Journal:  Biomaterials       Date:  2010-09-15       Impact factor: 12.479

7.  Limits of detection for time of flight secondary ion mass spectrometry (ToF-SIMS) and X-ray photoelectron spectroscopy (XPS): detection of low amounts of adsorbed protein.

Authors:  Matthew S Wagner; Sally L McArthur; Mingchao Shen; Thomas A Horbett; David G Castner
Journal:  J Biomater Sci Polym Ed       Date:  2002       Impact factor: 3.517

8.  Preserving the structure of adsorbed protein films for time-of-flight secondary ion mass spectrometry analysis.

Authors:  Nan Xia; David G Castner
Journal:  J Biomed Mater Res A       Date:  2003-10-01       Impact factor: 4.396

9.  Surface Analysis of Photolithographic Patterns using ToF-SIMS and PCA.

Authors:  Manish Dubey; Kazunori Emoto; Fang Cheng; Lara J Gamble; Hironobu Takahashi; David W Grainger; David G Castner
Journal:  Surf Interface Anal       Date:  2009-03-18       Impact factor: 1.607

10.  Imaging Analysis of Carbohydrate-Modified Surfaces Using ToF-SIMS and SPRi.

Authors:  Kathryn M Bolles; Fang Cheng; Jesse Burk-Rafel; Manish Dubey; Daniel M Ratner
Journal:  Materials (Basel)       Date:  2010-07-07       Impact factor: 3.623

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  39 in total

1.  Time of flight secondary ion mass spectrometry of bone-Impact of sample preparation and measurement conditions.

Authors:  Anja Henss; Anne Hild; Marcus Rohnke; Sabine Wenisch; Juergen Janek
Journal:  Biointerphases       Date:  2015-06-07       Impact factor: 2.456

2.  Lipid analysis of eight human breast cancer cell lines with ToF-SIMS.

Authors:  Michael A Robinson; Daniel J Graham; Fionnuala Morrish; David Hockenbery; Lara J Gamble
Journal:  Biointerphases       Date:  2015-06-28       Impact factor: 2.456

3.  Image and Spectral Processing for ToF-SIMS Analysis of Biological Materials.

Authors:  Daniel J Graham; David G Castner
Journal:  Mass Spectrom (Tokyo)       Date:  2013-04-15

4.  Two-dimensional and three-dimensional dynamic imaging of live biofilms in a microchannel by time-of-flight secondary ion mass spectrometry.

Authors:  Xin Hua; Matthew J Marshall; Yijia Xiong; Xiang Ma; Yufan Zhou; Abigail E Tucker; Zihua Zhu; Songqin Liu; Xiao-Ying Yu
Journal:  Biomicrofluidics       Date:  2015-05-05       Impact factor: 2.800

5.  Stabilization of dry protein coatings with compatible solutes.

Authors:  Manuela S Killian; Adam J Taylor; David G Castner
Journal:  Biointerphases       Date:  2018-06-29       Impact factor: 2.456

Review 6.  Imaging mass spectrometry in neuroscience.

Authors:  Jörg Hanrieder; Nhu T N Phan; Michael E Kurczy; Andrew G Ewing
Journal:  ACS Chem Neurosci       Date:  2013-04-30       Impact factor: 4.418

7.  Insights into the histology of planarian flatworm Phagocata gracilis based on location specific, intact lipid information provided by GCIB-ToF-SIMS imaging.

Authors:  Tina B Angerer; Neil Chakravarty; Michael J Taylor; Carrie D Nicora; Daniel J Graham; Christopher R Anderton; Eric H Chudler; Lara J Gamble
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2019-02-04       Impact factor: 4.698

8.  Secondary Ion Mass Spectrometry Imaging of Tissues, Cells, and Microbial Systems.

Authors:  Lara J Gamble; Christopher R Anderton
Journal:  Micros Today       Date:  2016-03-18

9.  ToF-SIMS and XPS Characterization of Protein Films Adsorbed onto Bare and Sodium Styrenesulfonate-Grafted Gold Substrates.

Authors:  Rami N Foster; Elisa T Harrison; David G Castner
Journal:  Langmuir       Date:  2016-03-22       Impact factor: 3.882

10.  Simple replica micromolding of biocompatible styrenic elastomers.

Authors:  Mark D Borysiak; Kevin S Bielawski; Nathan J Sniadecki; Colin F Jenkel; Bryan D Vogt; Jonathan D Posner
Journal:  Lab Chip       Date:  2013-07-21       Impact factor: 6.799

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