Literature DB >> 17854159

Multivariate statistical analysis of three-spatial-dimension TOF-SIMS raw data sets.

V S Smentkowski1, S G Ostrowski, E Braunstein, M R Keenan, J A Ohlhausen, P G Kotula.   

Abstract

Three-spatial-dimension (3D) time-of-flight-secondary ion mass spectrometry (TOF-SIMS) analysis can be performed if an X-Y image is saved at each depth of a depth profile. In this paper, we will show how images reconstructed from specified depths, depth profiles generated from specific X-Y coordinates, as well as three-spatial-dimensional rendering provide for a better understanding of the sample than traditional depth profiling where only a single spectrum is collected at each depth. We will also demonstrate, for the first time, that multivariate statistical analysis (MVSA) tools can be used to perform a rapid, unbiased analysis of the entire 3D data set. In the example shown here, retrospective analysis and MVSA revealed a more complete picture of the 3D chemical distribution of the sample than did the as-measured depth profiling alone. Color overlays of the MVSA components as well as animated movies allowing for visualization (in 3D) from various angles will be provided.

Entities:  

Year:  2007        PMID: 17854159     DOI: 10.1021/ac071019o

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  5 in total

1.  Automated, feature-based image alignment for high-resolution imaging mass spectrometry of large biological samples.

Authors:  Alexander Broersen; Robert van Liere; A F Maarten Altelaar; Ron M A Heeren; Liam A McDonnell
Journal:  J Am Soc Mass Spectrom       Date:  2008-03-18       Impact factor: 3.109

Review 2.  Unsupervised machine learning for exploratory data analysis in imaging mass spectrometry.

Authors:  Nico Verbeeck; Richard M Caprioli; Raf Van de Plas
Journal:  Mass Spectrom Rev       Date:  2019-10-11       Impact factor: 10.946

Review 3.  Multivariate analysis of ToF-SIMS data from multicomponent systems: the why, when, and how.

Authors:  Daniel J Graham; David G Castner
Journal:  Biointerphases       Date:  2012-08-15       Impact factor: 2.456

4.  Automated Interpretation and Extraction of Topographic Information from Time of Flight Secondary Ion Mass Spectrometry Data.

Authors:  Anton V Ievlev; Alexei Belianinov; Stephen Jesse; David P Allison; Mitchel J Doktycz; Scott T Retterer; Sergei V Kalinin; Olga S Ovchinnikova
Journal:  Sci Rep       Date:  2017-12-06       Impact factor: 4.379

5.  massPix: an R package for annotation and interpretation of mass spectrometry imaging data for lipidomics.

Authors:  Nicholas J Bond; Albert Koulman; Julian L Griffin; Zoe Hall
Journal:  Metabolomics       Date:  2017-09-21       Impact factor: 4.290

  5 in total

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