Literature DB >> 22887654

Draft genome sequence of Paenibacillus polymyxa OSY-DF, which coproduces a lantibiotic, paenibacillin, and polymyxin E1.

En Huang1, Ahmed E Yousef.   

Abstract

Paenibacillus polymyxa OSY-DF is a Gram-positive rod-shaped bacterium isolated from a fermented vegetable food. This bacterial strain displays potent antimicrobial activities against Gram-positive and Gram-negative pathogenic bacteria, attributed to the production of the lantibiotic paenibacillin and the colistin peptide polymyxin E1. Here we report the draft genome sequence of Paenibacillus polymyxa OSY-DF.

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Year:  2012        PMID： 22887654      PMCID： PMC3415507          DOI： 10.1128/JB.00846-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  19 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  The genome of the plant growth-promoting rhizobacterium Paenibacillus polymyxa M-1 contains nine sites dedicated to nonribosomal synthesis of lipopeptides and polyketides.

Authors:  Ben Niu; Christian Rueckert; Jochen Blom; Qi Wang; Rainer Borriss
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

3.  Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity.

Authors:  Mingchao Ma; Cuicui Wang; Yanqin Ding; Li Li; Delong Shen; Xin Jiang; Dawei Guan; Fengming Cao; Huijun Chen; Ruihua Feng; Xuan Wang; Yifan Ge; Liangtong Yao; Xiaohui Bing; Xiaohong Yang; Jun Li; Binghai Du
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

Review 4.  Polymyxins revisited.

Authors:  David Landman; Claudiu Georgescu; Don Antonio Martin; John Quale
Journal:  Clin Microbiol Rev       Date:  2008-07       Impact factor: 26.132

5.  N-terminal acetylation in paenibacillin, a novel lantibiotic.

Authors:  Zengguo He; Chunhua Yuan; Liwen Zhang; Ahmed E Yousef
Journal:  FEBS Lett       Date:  2008-07-14       Impact factor: 4.124

6.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

7.  Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium.

Authors:  Haeyoung Jeong; Soo-Young Park; Won-Hyong Chung; Sun Hong Kim; Namshin Kim; Seung-Hwan Park; Jihyun F Kim
Journal:  J Bacteriol       Date:  2011-07-08       Impact factor: 3.490

8.  Genome sequence of the polymyxin-producing plant-probiotic rhizobacterium Paenibacillus polymyxa E681.

Authors:  Jihyun F Kim; Haeyoung Jeong; Soo-Young Park; Seong-Bin Kim; Yon Kyoung Park; Soo-Keun Choi; Choong-Min Ryu; Cheol-Goo Hur; Sa-Youl Ghim; Tae Kwang Oh; Jae Jong Kim; Chang Seuk Park; Seung-Hwan Park
Journal:  J Bacteriol       Date:  2010-09-17       Impact factor: 3.490

9.  BAGEL2: mining for bacteriocins in genomic data.

Authors:  Anne de Jong; Auke J van Heel; Jan Kok; Oscar P Kuipers
Journal:  Nucleic Acids Res       Date:  2010-05-12       Impact factor: 16.971

10.  In vitro activity of colistin (polymyxin E) against 3,480 isolates of gram-negative bacilli obtained from patients in Canadian hospitals in the CANWARD study, 2007-2008.

Authors:  A Walkty; M DeCorby; K Nichol; J A Karlowsky; D J Hoban; G G Zhanel
Journal:  Antimicrob Agents Chemother       Date:  2009-08-24       Impact factor: 5.191
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  10 in total

1.  Paenibacillus enshidis sp. nov., Isolated from the Nodules of Robinia pseudoacacia L.

Authors:  Jie Yin; Donglan He; Xiaohua Li; Xiaobo Zeng; Mengyang Tian; Guojun Cheng
Journal:  Curr Microbiol       Date:  2015-06-11       Impact factor: 2.188

2.  Efficient Production of Broad-Spectrum Antimicrobials by Paenibacillus polymyxa OSY-EC Using Acid Whey-Based Medium and Novel Antimicrobial Concentration Approach.

Authors:  Ahmed G Abdelhamid; Emily P Campbell; Zach Hawkins; Ahmed E Yousef
Journal:  Front Bioeng Biotechnol       Date:  2022-05-13

3.  Investigation of the bacterial retting community of kenaf (Hibiscus cannabinus) under different conditions using next-generation semiconductor sequencing.

Authors:  David K Visi; Nandika D'Souza; Brian G Ayre; Charles L Webber Iii; Michael S Allen
Journal:  J Ind Microbiol Biotechnol       Date:  2013-03-10       Impact factor: 3.346

4.  MALDI-FTICR MS imaging as a powerful tool to identify Paenibacillus antibiotics involved in the inhibition of plant pathogens.

Authors:  Delphine Debois; Marc Ongena; Hélène Cawoy; Edwin De Pauw
Journal:  J Am Soc Mass Spectrom       Date:  2013-05-01       Impact factor: 3.109

5.  Lipopeptides as main ingredients for inhibition of fungal phytopathogens by Bacillus subtilis/amyloliquefaciens.

Authors:  Hélène Cawoy; Delphine Debois; Laurent Franzil; Edwin De Pauw; Philippe Thonart; Marc Ongena
Journal:  Microb Biotechnol       Date:  2014-12-19       Impact factor: 5.813

6.  Complete Genome Sequence of Paenibacillus polymyxa CR1, a Plant Growth-Promoting Bacterium Isolated from the Corn Rhizosphere Exhibiting Potential for Biocontrol, Biomass Degradation, and Biofuel Production.

Authors:  Alexander W Eastman; Brian Weselowski; Naeem Nathoo; Ze-Chun Yuan
Journal:  Genome Announc       Date:  2014-01-23

7.  Bacterial succession and metabolite changes during flax (Linum usitatissimum L.) retting with Bacillus cereus HDYM-02.

Authors:  Dan Zhao; Pengfei Liu; Chao Pan; Renpeng Du; Wenxiang Ping; Jingping Ge
Journal:  Sci Rep       Date:  2016-09-02       Impact factor: 4.379

8.  Genomic comparison of sporeforming bacilli isolated from milk.

Authors:  Andrea I Moreno Switt; Alexis D Andrus; Matthew L Ranieri; Renato H Orsi; Reid Ivy; Henk C den Bakker; Nicole H Martin; Martin Wiedmann; Kathryn J Boor
Journal:  BMC Genomics       Date:  2014-01-14       Impact factor: 3.969

9.  Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness.

Authors:  Alexander W Eastman; David E Heinrichs; Ze-Chun Yuan
Journal:  BMC Genomics       Date:  2014-10-03       Impact factor: 3.969

10.  Integrated Proteomics and Lipidomics Reveal That the Swarming Motility of Paenibacillus polymyxa Is Characterized by Phospholipid Modification, Surfactant Deployment, and Flagellar Specialization Relative to Swimming Motility.

Authors:  Suresh Poudel; Richard J Giannone; Abigail T Farmer; Shawn R Campagna; Amber N Bible; Jennifer L Morrell-Falvey; James G Elkins; Robert L Hettich
Journal:  Front Microbiol       Date:  2019-11-19       Impact factor: 5.640
  10 in total

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