Literature DB >> 22884106

A fluorescence-detection size-exclusion chromatography-based thermostability assay for membrane protein precrystallization screening.

Motoyuki Hattori1, Ryan E Hibbs, Eric Gouaux.   

Abstract

Optimization of membrane protein stability under different solution conditions is essential for obtaining crystals that diffract to high resolution. Traditional methods that evaluate protein stability require large amounts of material and are, therefore, ill suited for medium- to high-throughput screening of membrane proteins. Here we present a rapid and efficient fluorescence-detection size-exclusion chromatography-based thermostability assay (FSEC-TS). In this method, the target protein is fused to GFP. Heated protein samples, treated with a panel of additives, are then analyzed by FSEC. FSEC-TS allows one to evaluate the thermostability of nanogram-to-microgram amounts of the target protein under a variety of conditions without purification. We applied this method to the Danio rerio P2X4 receptor and Caenorhabditis elegans GluCl to screen ligands, ions, and lipids, including newly designed cholesterol derivatives. In the case of GluCl, the screening results were used to obtain crystals of the receptor in the presence of lipids.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22884106      PMCID: PMC3441139          DOI: 10.1016/j.str.2012.06.009

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  32 in total

1.  Block by extracellular Mg2+ of single human purinergic P2X4 receptor channels expressed in human embryonic kidney cells.

Authors:  Y A Negulyaev; F Markwardt
Journal:  Neurosci Lett       Date:  2000-02-04       Impact factor: 3.046

2.  A defined protein-detergent-lipid complex for crystallization of integral membrane proteins: The cytochrome b6f complex of oxygenic photosynthesis.

Authors:  Huamin Zhang; Genji Kurisu; Janet L Smith; William A Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-17       Impact factor: 11.205

3.  Three-dimensional crystallization of the Escherichia coli glycerol-3-phosphate transporter: a member of the major facilitator superfamily.

Authors:  M Joanne Lemieux; Jinmei Song; Myong Jin Kim; Yafei Huang; Anthony Villa; Manfred Auer; Xiao-Dan Li; Da-Neng Wang
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

4.  Molecular mechanism of ATP binding and ion channel activation in P2X receptors.

Authors:  Motoyuki Hattori; Eric Gouaux
Journal:  Nature       Date:  2012-05-10       Impact factor: 49.962

5.  Renaturation of Aequorea gree-fluorescent protein.

Authors:  S H Bokman; W W Ward
Journal:  Biochem Biophys Res Commun       Date:  1981-08-31       Impact factor: 3.575

6.  X-ray structures of LeuT in substrate-free outward-open and apo inward-open states.

Authors:  Harini Krishnamurthy; Eric Gouaux
Journal:  Nature       Date:  2012-01-09       Impact factor: 49.962

7.  Simple screening method for improving membrane protein thermostability.

Authors:  Romina Mancusso; Nathan K Karpowich; Bryan K Czyzewski; Da-Neng Wang
Journal:  Methods       Date:  2011-08-05       Impact factor: 3.608

8.  Cloning of an avermectin-sensitive glutamate-gated chloride channel from Caenorhabditis elegans.

Authors:  D F Cully; D K Vassilatis; K K Liu; P S Paress; L H Van der Ploeg; J M Schaeffer; J P Arena
Journal:  Nature       Date:  1994-10-20       Impact factor: 49.962

Review 9.  Molecular physiology of P2X receptors.

Authors:  R Alan North
Journal:  Physiol Rev       Date:  2002-10       Impact factor: 37.312

Review 10.  Knockouts model the 100 best-selling drugs--will they model the next 100?

Authors:  Brian P Zambrowicz; Arthur T Sands
Journal:  Nat Rev Drug Discov       Date:  2003-01       Impact factor: 84.694

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  95 in total

1.  Rapid Bioinformatic Identification of Thermostabilizing Mutations.

Authors:  David B Sauer; Nathan K Karpowich; Jin Mei Song; Da-Neng Wang
Journal:  Biophys J       Date:  2015-10-06       Impact factor: 4.033

2.  Fluorescent probe for high-throughput screening of membrane protein expression.

Authors:  A E Backmark; N Olivier; A Snijder; E Gordon; N Dekker; A D Ferguson
Journal:  Protein Sci       Date:  2013-07-03       Impact factor: 6.725

3.  A Proteoliposome-Based Efflux Assay to Determine Single-molecule Properties of Cl- Channels and Transporters.

Authors:  Daniel Basilio; Alessio Accardi
Journal:  J Vis Exp       Date:  2015-04-20       Impact factor: 1.355

Review 4.  Membrane proteins, detergents and crystals: what is the state of the art?

Authors:  Patrick J Loll
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

5.  Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent.

Authors:  Takanori Nakane; Shinya Hanashima; Mamoru Suzuki; Haruka Saiki; Taichi Hayashi; Keisuke Kakinouchi; Shigeru Sugiyama; Satoshi Kawatake; Shigeru Matsuoka; Nobuaki Matsumori; Eriko Nango; Jun Kobayashi; Tatsuro Shimamura; Kanako Kimura; Chihiro Mori; Naoki Kunishima; Michihiro Sugahara; Yoko Takakyu; Shigeyuki Inoue; Tetsuya Masuda; Toshiaki Hosaka; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Tsuyoshi Inoue; Osamu Nureki; So Iwata; Michio Murata; Eiichi Mizohata
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

6.  Purification and Reconstitution of TRPV1 for Spectroscopic Analysis.

Authors:  Francisco J Sierra-Valdez; Richard A Stein; Phanindra Velissety; Valeria Vasquez; Julio F Cordero-Morales
Journal:  J Vis Exp       Date:  2018-07-03       Impact factor: 1.355

7.  Crystal structure of a human plasma membrane phospholipid flippase.

Authors:  Hanayo Nakanishi; Katsumasa Irie; Katsumori Segawa; Kazuya Hasegawa; Yoshinori Fujiyoshi; Shigekazu Nagata; Kazuhiro Abe
Journal:  J Biol Chem       Date:  2020-06-03       Impact factor: 5.157

8.  Characterization and Control of Dynamic Rearrangement in a Self-Assembled Antibody Carrier.

Authors:  Anshul Dhankher; Manuel E Hernandez; Hannah C Howard; Julie A Champion
Journal:  Biomacromolecules       Date:  2020-03-05       Impact factor: 6.988

9.  An Improved Strategy for Fluorescent Tagging of Membrane Proteins for Overexpression and Purification in Mammalian Cells.

Authors:  Mitra S Rana; Xiyu Wang; Anirban Banerjee
Journal:  Biochemistry       Date:  2018-11-27       Impact factor: 3.162

10.  Large-scale identification of membrane proteins with properties favorable for crystallization.

Authors:  Jared Kim; Allison Kagawa; Kellie Kurasaki; Niloufar Ataie; Il Kyu Cho; Qing X Li; Ho Leung Ng
Journal:  Protein Sci       Date:  2015-08-27       Impact factor: 6.725

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