| Literature DB >> 22883206 |
Thomas P A Debray1, Hendrik Koffijberg, Difei Lu, Yvonne Vergouwe, Ewout W Steyerberg, Karel G M Moons.
Abstract
BACKGROUND: Diagnostic and prognostic literature is overwhelmed with studies reporting univariable predictor-outcome associations. Currently, methods to incorporate such information in the construction of a prediction model are underdeveloped and unfamiliar to many researchers.Entities:
Mesh:
Year: 2012 PMID: 22883206 PMCID: PMC3548751 DOI: 10.1186/1471-2288-12-121
Source DB: PubMed Journal: BMC Med Res Methodol ISSN: 1471-2288 Impact factor: 4.615
Overview of approaches
| | | ||||
|---|---|---|---|---|---|
| Step 1 | Estimate associations in IPD | | |||
| | Implemented | Yes | Yes | Yes | Yes |
| | Association type | m | u+m | u+m | u+m |
| | Prior distribution | none | none | none | weakly informative |
| Step 2 | Summarize univariable associations | | |||
| | Implemented | No | Yes | Yes | Yes |
| | Source | - | I+L | I+L | I+L |
| | Pooling Method | - | random effects | random effects | random effects |
| Step 3 | Estimate adaptation from univariable to multivariable association | | |||
| | Implemented | No | Yes | Yes | Yes |
| | Assumptions | - | (1)+(2) | (1) | (1) |
| | Estimation procedure | - | analytic | bootstrap | bootstrap |
| | Prior distributions | - | none | none | weakly informative |
| Step 4 | Apply adaptation to summary estimate from the literature and estimate | | |||
| Implemented | No | Yes | Yes | Yes | |
This overview illustrates the characteristics of the approaches discussed and used in the simulation study. In the first step, univariable (u) and multivariable (m) associations are estimated in the IPD. In the second step, the univariable associations from the literature (L) and data at hand (I) are summarized. Afterwards, the adaptation from univariable to multivariable association is estimated in step 3. The assumptions about the variance component here are as follows: (1) estimated associations in the individual participant data (IPD) are independent from estimated associations in the literature, and (2) . Finally, step 4 estimates a multivariable association by applying the adaptation to the univariable summary estimate from the literature.
Figure 1Comparison of estimated associations. Graphic presentation of multivariable (with true value 1.45) and corresponding univariable (with true value 1.25) associations estimated in an IPD of size n. This dataset is generated according to with Pr(y = 1) = logit−1(−3.43 + b1x1 + 1.18x2) and . Each interval is based on 10 000 repetitions.
Results simulation study
| | | | | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100 | 500 | 0 | 0 | 15.07% | 0.613 | 89.0% | 8.87% | 0.219 | 89.2% | 8 | 1.3 e+12% | 1.8 e+23 | 97.8% | -1.98% | 0.065 | 89.6% |
| 200 | 500 | 0 | 0 | 6.58% | 0.186 | 90.0% | 2.34% | 0.063 | 90.8% | 1 | 18.13% | 3.671 | 94.4% | -1.44% | 0.043 | 89.0% |
| 500 | 500 | 0 | 0 | 3.65% | 0.061 | 90.4% | 1.00% | 0.024 | 90.0% | 0 | 2.21% | 0.026 | 91.0% | -0.54% | 0.021 | 89.0% |
| 1000 | 500 | 0 | 0 | 1.31% | 0.028 | 90.2% | 0.84% | 0.014 | 91.2% | 0 | 1.34% | 0.014 | 90.6% | -0.11% | 0.013 | 90.0% |
| 100 | 500 | 0 | 0.50 | 20.39% | 0.888 | 91.2% | 5.75% | 0.166 | 94.4% | 7 | -80.77% | 3.9 e+04 | 98.4% | 1.41% | 0.048 | 96.2% |
| 200 | 500 | 0 | 0.50 | 8.22% | 0.226 | 91.0% | 1.63% | 0.037 | 93.0% | 0 | 4.55% | 0.091 | 94.2% | 0.32% | 0.031 | 93.6% |
| 500 | 500 | 0 | 0.50 | 1.89% | 0.073 | 87.6% | 0.45% | 0.019 | 92.2% | 0 | 0.89% | 0.020 | 90.8% | -0.32% | 0.019 | 91.4% |
| 1000 | 500 | 0 | 0.50 | 0.88% | 0.031 | 92.2% | 0.33% | 0.011 | 93.8% | 0 | 0.55% | 0.012 | 92.8% | -0.19% | 0.011 | 93.8% |
| 100 | 500 | 0.20 | 0 | 10.89% | 0.440 | 92.4% | 5.17% | 0.140 | 90.4% | 8 | -3.7 e+02% | 5.6 e+04 | 98.0% | -4.02% | 0.056 | 89.8% |
| 200 | 500 | 0.20 | 0 | 6.54% | 0.177 | 92.0% | 3.81% | 0.060 | 91.6% | 1 | -11.08% | 0.801 | 95.6% | -0.18% | 0.039 | 91.6% |
| 500 | 500 | 0.20 | 0 | 1.23% | 0.049 | 93.8% | 0.34% | 0.024 | 92.2% | 0 | 1.53% | 0.026 | 92.2% | -1.13% | 0.022 | 90.8% |
| 1000 | 500 | 0.20 | 0 | 0.94% | 0.029 | 89.2% | 0.89% | 0.017 | 90.4% | 0 | 1.42% | 0.018 | 90.4% | 0.02% | 0.016 | 89.8% |
| 100 | 2000 | 0 | 0 | 47.95% | 4.9 e+01 | 93.2% | 37.63% | 4.3 e+01 | 86.2% | 21 | 1.6 e+12% | 1.5 e+23 | 98.2% | -1.09% | 0.058 | 89.6% |
| 200 | 2000 | 0 | 0 | 5.60% | 0.184 | 90.2% | 3.31% | 0.058 | 89.8% | 1 | 54.36% | 2.1 e+02 | 94.2% | -0.12% | 0.036 | 88.2% |
| 500 | 2000 | 0 | 0 | 2.36% | 0.064 | 87.2% | 1.10% | 0.017 | 89.2% | 0 | 2.31% | 0.020 | 91.4% | -0.07% | 0.015 | 88.8% |
| 1000 | 2000 | 0 | 0 | 1.17% | 0.027 | 90.0% | 0.58% | 0.009 | 90.2% | 0 | 1.16% | 0.010 | 89.2% | -0.03% | 0.009 | 87.4% |
| 100 | 2000 | 0 | 0.50 | 20.05% | 0.856 | 89.6% | 5.68% | 0.139 | 92.0% | 11 | 3.5 e+12% | 1.3 e+23 | 98.4% | 1.67% | 0.045 | 95.4% |
| 200 | 2000 | 0 | 0.50 | 6.99% | 0.206 | 90.8% | 2.67% | 0.035 | 92.2% | 1 | 5.94% | 0.120 | 93.8% | 2.02% | 0.029 | 92.2% |
| 500 | 2000 | 0 | 0.50 | 2.44% | 0.063 | 90.8% | 0.75% | 0.011 | 92.8% | 0 | 1.18% | 0.011 | 92.0% | 0.45% | 0.010 | 92.2% |
| 1000 | 2000 | 0 | 0.50 | 1.62% | 0.032 | 89.4% | 0.26% | 0.007 | 91.6% | 0 | 0.45% | 0.007 | 91.6% | 0.02% | 0.007 | 91.4% |
| 100 | 2000 | 0.20 | 0 | 16.17% | 0.654 | 92.6% | 7.67% | 0.201 | 89.8% | 16 | 1.5 e+03% | 3.9 e+04 | 98.2% | -2.66% | 0.046 | 91.0% |
| 200 | 2000 | 0.20 | 0 | 6.63% | 0.177 | 93.0% | 3.74% | 0.057 | 89.2% | 1 | 13.89% | 0.754 | 94.8% | 0.26% | 0.037 | 88.8% |
| 500 | 2000 | 0.20 | 0 | 2.33% | 0.056 | 92.8% | 1.23% | 0.021 | 89.6% | 0 | 2.46% | 0.023 | 89.4% | -0.08% | 0.019 | 88.6% |
| 1000 | 2000 | 0.20 | 0 | 2.02% | 0.027 | 92.2% | 1.07% | 0.014 | 87.4% | 0 | 1.62% | 0.015 | 86.6% | 0.37% | 0.013 | 85.8% |
Simulation results for the situation in which an IPD of NI subjects is available and the literature associations are based on 4 studies of NL subjects each. Between-study heterogeneity of literature associations is parameterized by σh. Correlation between the predictor variables x1 and x2 is indicated by ρ(x1, x2). The following statistics of are presented: percentage bias (PB), Mean Squared Error (MSE) and coverage of the 90% confidence interval (coverage). We also assessed how often the Greenland/Steyerberg adaptation method estimated a negative variance for (*).
Calculation of adapted associations in the application
| | ||||
| Greenland/Steyerberg Adapt. method | 0.02; 0.13 | -0.76; 0.07 | -0.74; 0.05 | -0.72; 0.08 |
| Improved Adapt. method (no prior) | 0.04; 0.39 | -0.69; 0.15 | -0.67; 0.16 | -0.72; 0.41 |
| Improved Adapt. method (weakly informative prior) | 0.05; 0.12 | -0.65; 0.07 | -0.63, 0.05 | -0.67; 0.11 |
| | ||||
| Greenland/Steyerberg Adapt. method | 0.35; 0.03 | 1.02; 0.07 | 1.58; 0.12 | 1.52; 0.10 |
| Improved Adapt. method (no prior) | 0.35; 0.03 | 1.02; 0.07 | 1.58; 0.12 | 1.52; 0.10 |
| Improved Adapt. method (weakly informative prior) | 0.34; 0.03 | 1.00; 0.07 | 1.52; 0.11 | 1.48; 0.09 |
| | ||||
| No meta-analysis | 0.30; 0.75 | 0.74; 0.32 | 1.04; 0.35 | 0.99; 0.38 |
| Greenland/Steyerberg Adapt. method | 0.36; 0.16 | 0.26; 0.14 | 0.84; 0.17 | 0.80; 0.18 |
| Improved Adapt. method (no prior) | 0.38; 0.42 | 0.33; 0.22 | 0.91; 0.28 | 0.80; 0.51 |
| Improved Adapt. method (weakly informative prior) | 0.39; 0.15 | 0.35; 0.14 | 0.90; 0.16 | 0.81; 0.21 |
Illustration of the adaptation (Adapt.) methods for four independent associations for predicting peri-operative mortality (in-hospital or within 30 days) after elective abdominal aortic aneurysm surgery. The following estimates are presented: adaptation from univariable to multivariable association (with mean and variance ), summary of univariable associations from the literature and IPD (with mean and variance ) and adapted multivariable association (with mean and variance ). Multivariable estimates were obtained through independent adaptation of the corresponding univariable associations, and are adjusted for the following variables: female sex, age in decades, history of myocardial infarction (MI), congestive heart failure (CHF), ischemia on electrocardiogram, renal co-morbidity and lung co-morbidity.