Literature DB >> 22864952

Causation and causal inference for genetic effects.

Stijn Vansteelandt1, Christoph Lange.   

Abstract

Over the past three decades, substantial developments have been made on how to infer the causal effect of an exposure on an outcome, using data from observational studies, with the randomized experiment as the golden standard. These developments have reshaped the paradigm of how to build statistical models, how to adjust for confounding, how to assess direct effects, mediated effects and interactions, and even how to analyze data from randomized experiments. The congruence of random transmission of alleles during meiosis and the randomization in controlled experiments/trials, suggests that genetic studies may lend themselves naturally to a causal analysis. In this contribution, we will reflect on this and motivate, through illustrative examples, where insights from the causal inference literature may help to understand and correct for typical biases in genetic effect estimates.

Mesh:

Year:  2012        PMID: 22864952     DOI: 10.1007/s00439-012-1208-9

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  46 in total

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3.  Data, design, and background knowledge in etiologic inference.

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5.  Semiparametric tests for sufficient cause interaction.

Authors:  Stijn Vansteelandt; Tyler J VanderWeele; James M Robins
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2012-03       Impact factor: 4.488

6.  A simple and improved correction for population stratification in case-control studies.

Authors:  Michael P Epstein; Andrew S Allen; Glen A Satten
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Review 7.  Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems.

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Journal:  Nat Rev Genet       Date:  2008-11       Impact factor: 53.242

8.  Covariate adjustment for two-sample treatment comparisons in randomized clinical trials: a principled yet flexible approach.

Authors:  Anastasios A Tsiatis; Marie Davidian; Min Zhang; Xiaomin Lu
Journal:  Stat Med       Date:  2008-10-15       Impact factor: 2.373

9.  Gene-environment interaction testing in family-based association studies with phenotypically ascertained samples: a causal inference approach.

Authors:  David W Fardo; Jinze Liu; Dawn L Demeo; Edwin K Silverman; Stijn Vansteelandt
Journal:  Biostatistics       Date:  2011-11-13       Impact factor: 5.279

10.  Mendelian randomisation and causal inference in observational epidemiology.

Authors:  Nuala A Sheehan; Vanessa Didelez; Paul R Burton; Martin D Tobin
Journal:  PLoS Med       Date:  2008-08-26       Impact factor: 11.069

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  6 in total

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Review 2.  Combining genetic and nongenetic biomarkers to realize the promise of pharmacogenomics for inflammatory diseases.

Authors:  Joseph C Maranville; Anna Di Rienzo
Journal:  Pharmacogenomics       Date:  2014       Impact factor: 2.533

3.  An epigenetic signature in peripheral blood associated with the haplotype on 17q21.31, a risk factor for neurodegenerative tauopathy.

Authors:  Yun Li; Jason A Chen; Renee L Sears; Fuying Gao; Eric D Klein; Anna Karydas; Michael D Geschwind; Howard J Rosen; Adam L Boxer; Weilong Guo; Matteo Pellegrini; Steve Horvath; Bruce L Miller; Daniel H Geschwind; Giovanni Coppola
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4.  Testing for direct genetic effects using a screening step in family-based association studies.

Authors:  Sharon M Lutz; Stijn Vansteelandt; Christoph Lange
Journal:  Front Genet       Date:  2013-11-21       Impact factor: 4.599

5.  Causal Inference in the Age of Decision Medicine.

Authors:  A Yazdani; E Boerwinkle
Journal:  J Data Mining Genomics Proteomics       Date:  2015-01

6.  Commentary: The formal approach to quantitative causal inference in epidemiology: misguided or misrepresented?

Authors:  Rhian M Daniel; Bianca L De Stavola; Stijn Vansteelandt
Journal:  Int J Epidemiol       Date:  2016-12-01       Impact factor: 9.685

  6 in total

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