Literature DB >> 22864199

Whole plant cell wall characterization using solution-state 2D NMR.

Shawn D Mansfield1, Hoon Kim, Fachuang Lu, John Ralph.   

Abstract

Recent advances in nuclear magnetic resonance (NMR) technology have made it possible to rapidly screen plant material and discern whole cell wall information without the need to deconstruct and fractionate the plant cell wall. This approach can be used to improve our understanding of the biology of cell wall structure and biosynthesis, and as a tool to select plant material for the most appropriate industrial applications. This is particularly true in an era when renewable materials are vital to the emerging bio-based economies. This protocol describes procedures for (i) the preparation and extraction of a biological plant tissue, (ii) solubilization strategies for plant material of varying composition and (iii) 2D NMR acquisition (for typically 15 min-5 h) and integration methods used to elucidate lignin subunit composition and lignin interunit linkage distribution, as well as cell wall polysaccharide profiling. Furthermore, we present data that demonstrate the utility of this new NMR whole cell wall characterization procedure with a variety of degradative methods traditionally used for cell wall compositional analysis.

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Year:  2012        PMID: 22864199     DOI: 10.1038/nprot.2012.064

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  40 in total

1.  Comparison of the acetyl bromide spectrophotometric method with other analytical lignin methods for determining lignin concentration in forage samples.

Authors:  Romualdo S Fukushima; Ronald D Hatfield
Journal:  J Agric Food Chem       Date:  2004-06-16       Impact factor: 5.279

Review 2.  The origin and evolution of lignin biosynthesis.

Authors:  Jing-Ke Weng; Clint Chapple
Journal:  New Phytol       Date:  2010-07       Impact factor: 10.151

3.  Solution-state 2D NMR of ball-milled plant cell wall gels in DMSO-d(6)/pyridine-d(5).

Authors:  Hoon Kim; John Ralph
Journal:  Org Biomol Chem       Date:  2009-12-03       Impact factor: 3.876

Review 4.  Advances in modifying lignin for enhanced biofuel production.

Authors:  Blake A Simmons; Dominique Loqué; John Ralph
Journal:  Curr Opin Plant Biol       Date:  2010-03-30       Impact factor: 7.834

5.  NMR characterization of lignins in Arabidopsis altered in the activity of ferulate 5-hydroxylase.

Authors:  J M Marita; J Ralph; R D Hatfield; C Chapple
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

6.  NMR characterization of lignins isolated from fruit and vegetable insoluble dietary fiber.

Authors:  Mirko Bunzel; John Ralph
Journal:  J Agric Food Chem       Date:  2006-10-18       Impact factor: 5.279

7.  Engineering traditional monolignols out of lignin by concomitant up-regulation of F5H1 and down-regulation of COMT in Arabidopsis.

Authors:  Ruben Vanholme; John Ralph; Takuya Akiyama; Fachuang Lu; Jorge Rencoret Pazo; Hoon Kim; Jørgen Holst Christensen; Brecht Van Reusel; Véronique Storme; Riet De Rycke; Antje Rohde; Kris Morreel; Wout Boerjan
Journal:  Plant J       Date:  2010-10-15       Impact factor: 6.417

8.  Variations in the cell wall composition of maize brown midrib mutants.

Authors:  Jane M Marita; Wilfred Vermerris; John Ralph; Ronald D Hatfield
Journal:  J Agric Food Chem       Date:  2003-02-26       Impact factor: 5.279

Review 9.  Lignin engineering.

Authors:  Ruben Vanholme; Kris Morreel; John Ralph; Wout Boerjan
Journal:  Curr Opin Plant Biol       Date:  2008-04-21       Impact factor: 7.834

10.  Identification of the structure and origin of a thioacidolysis marker compound for ferulic acid incorporation into angiosperm lignins (and an indicator for cinnamoyl CoA reductase deficiency).

Authors:  John Ralph; Hoon Kim; Fachuang Lu; John H Grabber; Jean-Charles Leplé; Jimmy Berrio-Sierra; Mohammad Mir Derikvand; Lise Jouanin; Wout Boerjan; Catherine Lapierre
Journal:  Plant J       Date:  2008-01       Impact factor: 6.417

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  118 in total

Review 1.  The cell biology of lignification in higher plants.

Authors:  Jaime Barros; Henrik Serk; Irene Granlund; Edouard Pesquet
Journal:  Ann Bot       Date:  2015-04-15       Impact factor: 4.357

2.  13C Tracking after 13CO2 Supply Revealed Diurnal Patterns of Wood Formation in Aspen.

Authors:  Amir Mahboubi; Pernilla Linden; Mattias Hedenström; Thomas Moritz; Totte Niittylä
Journal:  Plant Physiol       Date:  2015-04-30       Impact factor: 8.340

3.  Substrate-Specific Development of Thermophilic Bacterial Consortia by Using Chemically Pretreated Switchgrass.

Authors:  Stephanie A Eichorst; Chijioke Joshua; Noppadon Sathitsuksanoh; Seema Singh; Blake A Simmons; Steven W Singer
Journal:  Appl Environ Microbiol       Date:  2014-09-26       Impact factor: 4.792

4.  Lignocellulose pretreatment in a fungus-cultivating termite.

Authors:  Hongjie Li; Daniel J Yelle; Chang Li; Mengyi Yang; Jing Ke; Ruijuan Zhang; Yu Liu; Na Zhu; Shiyou Liang; Xiaochang Mo; John Ralph; Cameron R Currie; Jianchu Mo
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-19       Impact factor: 11.205

5.  Compensatory Guaiacyl Lignin Biosynthesis at the Expense of Syringyl Lignin in 4CL1-Knockout Poplar.

Authors:  Chung-Jui Tsai; Peng Xu; Liang-Jiao Xue; Hao Hu; Batbayar Nyamdari; Radnaa Naran; Xiaohong Zhou; Geert Goeminne; Ruili Gao; Erica Gjersing; Joseph Dahlen; Sivakumar Pattathil; Michael G Hahn; Mark F Davis; John Ralph; Wout Boerjan; Scott A Harding
Journal:  Plant Physiol       Date:  2020-03-05       Impact factor: 8.340

6.  Engineering Monolignol p-Coumarate Conjugates into Poplar and Arabidopsis Lignins.

Authors:  Rebecca A Smith; Eliana Gonzales-Vigil; Steven D Karlen; Ji-Young Park; Fachuang Lu; Curtis G Wilkerson; Lacey Samuels; John Ralph; Shawn D Mansfield
Journal:  Plant Physiol       Date:  2015-10-28       Impact factor: 8.340

7.  MicroRNA857 Is Involved in the Regulation of Secondary Growth of Vascular Tissues in Arabidopsis.

Authors:  Yuanyuan Zhao; Sen Lin; Zongbo Qiu; Dechang Cao; Jialong Wen; Xin Deng; Xiaohua Wang; Jinxing Lin; Xiaojuan Li
Journal:  Plant Physiol       Date:  2015-10-28       Impact factor: 8.340

8.  Commelinid Monocotyledon Lignins Are Acylated by p-Coumarate.

Authors:  Steven D Karlen; Heather C A Free; Dharshana Padmakshan; Bronwen G Smith; John Ralph; Philip J Harris
Journal:  Plant Physiol       Date:  2018-05-03       Impact factor: 8.340

9.  Intracellular pathways for lignin catabolism in white-rot fungi.

Authors:  Carlos Del Cerro; Erika Erickson; Tao Dong; Allison R Wong; Elizabeth K Eder; Samuel O Purvine; Hugh D Mitchell; Karl K Weitz; Lye Meng Markillie; Meagan C Burnet; David W Hoyt; Rosalie K Chu; Jan-Fang Cheng; Kelsey J Ramirez; Rui Katahira; Wei Xiong; Michael E Himmel; Venkataramanan Subramanian; Jeffrey G Linger; Davinia Salvachúa
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-02       Impact factor: 11.205

10.  Silencing CHALCONE SYNTHASE in Maize Impedes the Incorporation of Tricin into Lignin and Increases Lignin Content.

Authors:  Nubia B Eloy; Wannes Voorend; Wu Lan; Marina de Lyra Soriano Saleme; Igor Cesarino; Ruben Vanholme; Rebecca A Smith; Geert Goeminne; Andreas Pallidis; Kris Morreel; José Nicomedes; John Ralph; Wout Boerjan
Journal:  Plant Physiol       Date:  2016-12-09       Impact factor: 8.340

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