Literature DB >> 22843589

Draft genome sequence of Gluconobacter oxydans WSH-003, a strain that is extremely tolerant of saccharides and alditols.

Lili Gao1, Jingwen Zhou, Jie Liu, Guocheng Du, Jian Chen.   

Abstract

Gluconobacter oxydans is known for its incomplete oxidation of a wide range of alcohols, sugars, and acids in a bioprocess. The corresponding oxidation products are secreted almost completely into the medium. Here, we present the high-quality draft genome sequence of G. oxydans WSH-003, an industrial strain with both high l-sorbose productivity and extreme tolerance to saccharides and alditols.

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Year:  2012        PMID： 22843589      PMCID： PMC3416238          DOI： 10.1128/JB.00837-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
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2.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

5.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

6.  Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans.

Authors:  Christina Prust; Marc Hoffmeister; Heiko Liesegang; Arnim Wiezer; Wolfgang Florian Fricke; Armin Ehrenreich; Gerhard Gottschalk; Uwe Deppenmeier
Journal:  Nat Biotechnol       Date:  2005-01-23       Impact factor: 54.908

Review 7.  Biochemistry and biotechnological applications of Gluconobacter strains.

Authors:  U Deppenmeier; M Hoffmeister; C Prust
Journal:  Appl Microbiol Biotechnol       Date:  2002-10-12       Impact factor: 4.813

8.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

9.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  8 in total

1.  Transcriptome Analysis of Gluconobacter oxydans WSH-003 Exposed to Elevated 2-Keto-L-Gulonic Acid Reveals the Responses to Osmotic and Oxidative Stress.

Authors:  Jun Fang; Hui Wan; Weizhu Zeng; Jianghua Li; Jian Chen; Jingwen Zhou
Journal:  Appl Biochem Biotechnol       Date:  2020-08-22       Impact factor: 2.926

2.  Enhanced production of L-sorbose in an industrial Gluconobacter oxydans strain by identification of a strong promoter based on proteomics analysis.

Authors:  Yudong Hu; Hui Wan; Jianghua Li; Jingwen Zhou
Journal:  J Ind Microbiol Biotechnol       Date:  2015-05-08       Impact factor: 3.346

3.  Biosynthesis of miglitol intermediate 6-(N-hydroxyethyl)-amino-6-deoxy-α-l-sorbofuranose by an improved d-sorbitol dehydrogenase from Gluconobacter oxydans.

Authors:  Xia Ke; Ning-Ning Wang; Pan-Hong Yu; Yang-Hui Lu; Zhong-Ce Hu; Yu-Guo Zheng
Journal:  3 Biotech       Date:  2018-04-28       Impact factor: 2.406

4.  Enhanced production of L-sorbose from D-sorbitol by improving the mRNA abundance of sorbitol dehydrogenase in Gluconobacter oxydans WSH-003.

Authors:  Sha Xu; Xiaobei Wang; Guocheng Du; Jingwen Zhou; Jian Chen
Journal:  Microb Cell Fact       Date:  2014-10-18       Impact factor: 5.328

5.  Efficient bioconversion of 2,3-butanediol into acetoin using Gluconobacter oxydans DSM 2003.

Authors:  Xiuqing Wang; Min Lv; Lijie Zhang; Kun Li; Chao Gao; Cuiqing Ma; Ping Xu
Journal:  Biotechnol Biofuels       Date:  2013-10-31       Impact factor: 6.040

6.  A highly efficient sorbitol dehydrogenase from Gluconobacter oxydans G624 and improvement of its stability through immobilization.

Authors:  Tae-Su Kim; Sanjay K S Patel; Chandrabose Selvaraj; Woo-Suk Jung; Cheol-Ho Pan; Yun Chan Kang; Jung-Kul Lee
Journal:  Sci Rep       Date:  2016-09-16       Impact factor: 4.379

7.  Enhanced production of l-sorbose by systematic engineering of dehydrogenases in Gluconobacter oxydans.

Authors:  Li Liu; Yue Chen; Shiqin Yu; Jian Chen; Jingwen Zhou
Journal:  Synth Syst Biotechnol       Date:  2022-03-16

8.  Draft genome sequence of Gluconobacter thailandicus NBRC 3257.

Authors:  Minenosuke Matsutani; Haruo Suzuki; Toshiharu Yakushi; Kazunobu Matsushita
Journal:  Stand Genomic Sci       Date:  2014-02-01
  8 in total

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