Literature DB >> 22841722

Systems biology of cellular rhythms.

A Goldbeter1, C Gérard, D Gonze, J-C Leloup, G Dupont.   

Abstract

Rhythms abound in biological systems, particularly at the cellular level where they originate from the feedback loops present in regulatory networks. Cellular rhythms can be investigated both by experimental and modeling approaches, and thus represent a prototypic field of research for systems biology. They have also become a major topic in synthetic biology. We review advances in the study of cellular rhythms of biochemical rather than electrical origin by considering a variety of oscillatory processes such as Ca++ oscillations, circadian rhythms, the segmentation clock, oscillations in p53 and NF-κB, synthetic oscillators, and the oscillatory dynamics of cyclin-dependent kinases driving the cell cycle. Finally we discuss the coupling between cellular rhythms and their robustness with respect to molecular noise.

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Year:  2012        PMID: 22841722     DOI: 10.1016/j.febslet.2012.07.041

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  29 in total

1.  Complex, non-monotonic dose-response curves with multiple maxima: Do we (ever) sample densely enough?

Authors:  Fatima Cvrčková; Jiří Luštinec; Viktor Žárský
Journal:  Plant Signal Behav       Date:  2015

Review 2.  Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves.

Authors:  Albert Goldbeter
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2018-07-28       Impact factor: 4.226

3.  Molecular mechanisms that regulate the coupled period of the mammalian circadian clock.

Authors:  Jae Kyoung Kim; Zachary P Kilpatrick; Matthew R Bennett; Krešimir Josić
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

4.  Dosing time dependent in vitro pharmacodynamics of Everolimus despite a defective circadian clock.

Authors:  Yuan Zhang; Sylvie Giacchetti; Alexandre Parouchev; Eva Hadadi; Xiaomei Li; Robert Dallmann; Helena Xandri-Monje; Lucie Portier; René Adam; Françis Lévi; Sandrine Dulong; Yunhua Chang
Journal:  Cell Cycle       Date:  2018-01-02       Impact factor: 4.534

5.  In vivo tissue-wide synchronization of mitochondrial metabolic oscillations.

Authors:  Natalie Porat-Shliom; Yun Chen; Muhibullah Tora; Akiko Shitara; Andrius Masedunskas; Roberto Weigert
Journal:  Cell Rep       Date:  2014-10-16       Impact factor: 9.423

6.  Diverse role of decoys on emergence and precision of oscillations in a biomolecular clock.

Authors:  Supravat Dey; Abhyudai Singh
Journal:  Biophys J       Date:  2021-11-11       Impact factor: 4.033

Review 7.  Protein sequestration versus Hill-type repression in circadian clock models.

Authors:  Jae Kyoung Kim
Journal:  IET Syst Biol       Date:  2016-08       Impact factor: 1.615

Review 8.  Circadian rhythms and the HPA axis: A systems view.

Authors:  Ioannis P Androulakis
Journal:  WIREs Mech Dis       Date:  2021-01-12

9.  Feedback-based, system-level properties of vertebrate-microbial interactions.

Authors:  Ariel L Rivas; Mark D Jankowski; Renata Piccinini; Gabriel Leitner; Daniel Schwarz; Kevin L Anderson; Jeanne M Fair; Almira L Hoogesteijn; Wilfried Wolter; Marcelo Chaffer; Shlomo Blum; Tom Were; Stephen N Konah; Prakash Kempaiah; John M Ong'echa; Ulrike S Diesterbeck; Rachel Pilla; Claus-Peter Czerny; James B Hittner; James M Hyman; Douglas J Perkins
Journal:  PLoS One       Date:  2013-02-20       Impact factor: 3.240

10.  From quiescence to proliferation: Cdk oscillations drive the mammalian cell cycle.

Authors:  Claude Gérard; Albert Goldbeter
Journal:  Front Physiol       Date:  2012-11-02       Impact factor: 4.566

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