Literature DB >> 22817454

Structure of human DNA polymerase iota and the mechanism of DNA synthesis.

A V Makarova1, A V Kulbachinskiy.   

Abstract

Cellular DNA polymerases belong to several families and carry out different functions. Highly accurate replicative DNA polymerases play the major role in cell genome replication. A number of new specialized DNA polymerases were discovered at the turn of XX-XXI centuries and have been intensively studied during the last decade. Due to the special structure of the active site, these enzymes efficiently perform synthesis on damaged DNA but are characterized by low fidelity. Human DNA polymerase iota (Pol ι) belongs to the Y-family of specialized DNA polymerases and is one of the most error-prone enzymes involved in DNA synthesis. In contrast to other DNA polymerases, Pol ι is able to use noncanonical Hoogsteen interactions for nucleotide base pairing. This allows it to incorporate nucleotides opposite various lesions in the DNA template that impair Watson-Crick interactions. Based on the data of X-ray structural analysis of Pol ι in complexes with various DNA templates and dNTP substrates, we consider the structural peculiarities of the Pol ι active site and discuss possible mechanisms that ensure the unique behavior of the enzyme on damaged and undamaged DNA.

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Year:  2012        PMID: 22817454     DOI: 10.1134/S0006297912060016

Source DB:  PubMed          Journal:  Biochemistry (Mosc)        ISSN: 0006-2979            Impact factor:   2.487


  15 in total

Review 1.  New insights into Hoogsteen base pairs in DNA duplexes from a structure-based survey.

Authors:  Huiqing Zhou; Bradley J Hintze; Isaac J Kimsey; Bharathwaj Sathyamoorthy; Shan Yang; Jane S Richardson; Hashim M Al-Hashimi
Journal:  Nucleic Acids Res       Date:  2015-03-26       Impact factor: 16.971

2.  DNA damage tolerance pathway involving DNA polymerase ι and the tumor suppressor p53 regulates DNA replication fork progression.

Authors:  Stephanie Hampp; Tina Kiessling; Kerstin Buechle; Sabrina F Mansilla; Jürgen Thomale; Melanie Rall; Jinwoo Ahn; Helmut Pospiech; Vanesa Gottifredi; Lisa Wiesmüller
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-12       Impact factor: 11.205

3.  Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics.

Authors:  Heidi S Alvey; Federico L Gottardo; Evgenia N Nikolova; Hashim M Al-Hashimi
Journal:  Nat Commun       Date:  2014-09-04       Impact factor: 14.919

4.  Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A.

Authors:  Bharathwaj Sathyamoorthy; Honglue Shi; Huiqing Zhou; Yi Xue; Atul Rangadurai; Dawn K Merriman; Hashim M Al-Hashimi
Journal:  Nucleic Acids Res       Date:  2017-05-19       Impact factor: 16.971

Review 5.  Structure and function relationships in mammalian DNA polymerases.

Authors:  Nicole M Hoitsma; Amy M Whitaker; Matthew A Schaich; Mallory R Smith; Max S Fairlamb; Bret D Freudenthal
Journal:  Cell Mol Life Sci       Date:  2019-11-13       Impact factor: 9.261

6.  Characterizing Watson-Crick versus Hoogsteen Base Pairing in a DNA-Protein Complex Using Nuclear Magnetic Resonance and Site-Specifically 13C- and 15N-Labeled DNA.

Authors:  Huiqing Zhou; Bharathwaj Sathyamoorthy; Allison Stelling; Yu Xu; Yi Xue; Ying Zhang Pigli; David A Case; Phoebe A Rice; Hashim M Al-Hashimi
Journal:  Biochemistry       Date:  2019-04-05       Impact factor: 3.162

Review 7.  Increasing occurrences and functional roles for high energy purine-pyrimidine base-pairs in nucleic acids.

Authors:  Isaac Kimsey; Hashim M Al-Hashimi
Journal:  Curr Opin Struct Biol       Date:  2014-01-09       Impact factor: 6.809

8.  A historical account of Hoogsteen base-pairs in duplex DNA.

Authors:  Evgenia N Nikolova; Huiqing Zhou; Federico L Gottardo; Heidi S Alvey; Isaac J Kimsey; Hashim M Al-Hashimi
Journal:  Biopolymers       Date:  2013-12       Impact factor: 2.505

9.  Guanine to inosine substitution leads to large increases in the population of a transient G·C Hoogsteen base pair.

Authors:  Evgenia N Nikolova; Frederick Stull; Hashim M Al-Hashimi
Journal:  Biochemistry       Date:  2014-11-10       Impact factor: 3.162

10.  m(1)A and m(1)G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs.

Authors:  Huiqing Zhou; Isaac J Kimsey; Evgenia N Nikolova; Bharathwaj Sathyamoorthy; Gianmarc Grazioli; James McSally; Tianyu Bai; Christoph H Wunderlich; Christoph Kreutz; Ioan Andricioaei; Hashim M Al-Hashimi
Journal:  Nat Struct Mol Biol       Date:  2016-08-01       Impact factor: 15.369

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