Literature DB >> 22815439

Complete genome sequence of Geobacillus thermoglucosidans TNO-09.020, a thermophilic sporeformer associated with a dairy-processing environment.

Yu Zhao1, Martien P Caspers, Tjakko Abee, Roland J Siezen, Remco Kort.   

Abstract

Thermophilic spore-forming bacteria are a common cause of contamination in dairy products. We isolated the thermophilic strain Geobacillus thermoglucosidans TNO-09.020 from a milk processing plant and report the complete genome of a dairy plant isolate consisting of a single chromosome of 3.75 Mb.

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Year:  2012        PMID： 22815439      PMCID： PMC3416512          DOI： 10.1128/JB.00318-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  Scaffolding pre-assembled contigs using SSPACE.

Authors:  Marten Boetzer; Christiaan V Henkel; Hans J Jansen; Derek Butler; Walter Pirovano
Journal:  Bioinformatics       Date:  2010-12-12       Impact factor: 6.937

2.  ACT: the Artemis Comparison Tool.

Authors:  Tim J Carver; Kim M Rutherford; Matthew Berriman; Marie-Adele Rajandream; Barclay G Barrell; Julian Parkhill
Journal:  Bioinformatics       Date:  2005-06-23       Impact factor: 6.937

3.  Taxonomic revision of the genus Geobacillus: emendation of Geobacillus, G. stearothermophilus, G. jurassicus, G. toebii, G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus comb. nov.; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans comb. nov.; and proposal of Anoxybacillus caldiproteolyticus sp. nov.

Authors:  An Coorevits; Anna E Dinsdale; Gillian Halket; Liesbeth Lebbe; Paul De Vos; Anita Van Landschoot; Niall A Logan
Journal:  Int J Syst Evol Microbiol       Date:  2011-08-19       Impact factor: 2.747

4.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

5.  InterProScan: protein domains identifier.

Authors:  E Quevillon; V Silventoinen; S Pillai; N Harte; N Mulder; R Apweiler; R Lopez
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

6.  Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.

Authors:  Tim Carver; Matthew Berriman; Adrian Tivey; Chinmay Patel; Ulrike Böhme; Barclay G Barrell; Julian Parkhill; Marie-Adèle Rajandream
Journal:  Bioinformatics       Date:  2008-10-09       Impact factor: 6.937
  6 in total
  19 in total

1.  Complete genome sequence, metabolic model construction and phenotypic characterization of Geobacillus LC300, an extremely thermophilic, fast growing, xylose-utilizing bacterium.

Authors:  Lauren T Cordova; Christopher P Long; Keerthi P Venkataramanan; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2015-09-21       Impact factor: 9.783

2.  Transformable facultative thermophile Geobacillus stearothermophilus NUB3621 as a host strain for metabolic engineering.

Authors:  Kristen Blanchard; Srebrenka Robic; Ichiro Matsumura
Journal:  Appl Microbiol Biotechnol       Date:  2014-05-02       Impact factor: 4.813

3.  Abiotic and microbiotic factors controlling biofilm formation by thermophilic sporeformers.

Authors:  Yu Zhao; Martien P M Caspers; Karin I Metselaar; Paulo de Boer; Guus Roeselers; Roy Moezelaar; Masja Nierop Groot; Roy C Montijn; Tjakko Abee; Remco Kort
Journal:  Appl Environ Microbiol       Date:  2013-07-12       Impact factor: 4.792

4.  Genomic Analysis Provides New Insights Into Biotechnological and Industrial Potential of Parageobacillus thermantarcticus M1.

Authors:  Songul Yasar Yildiz; Ilaria Finore; Luigi Leone; Ida Romano; Licia Lama; Ceyda Kasavi; Barbara Nicolaus; Ebru Toksoy Oner; Annarita Poli
Journal:  Front Microbiol       Date:  2022-06-09       Impact factor: 6.064

5.  Mathematical Models for the Biofilm Formation of Geobacillus and Anoxybacillus on Stainless Steel Surface in Whole Milk.

Authors:  Basar Karaca; Sencer Buzrul; Arzu Coleri Cihan
Journal:  Food Sci Anim Resour       Date:  2021-03-01

6.  Genomic analysis of six new Geobacillus strains reveals highly conserved carbohydrate degradation architectures and strategies.

Authors:  Phillip J Brumm; Pieter De Maayer; David A Mead; Don A Cowan
Journal:  Front Microbiol       Date:  2015-05-12       Impact factor: 5.640

7.  Complete Genome Sequence of Anoxybacillus flavithermus TNO-09.006, a Thermophilic Sporeformer Associated with a Dairy-Processing Environment.

Authors:  Martien P M Caspers; Jos Boekhorst; Tjakko Abee; Roland J Siezen; Remco Kort
Journal:  Genome Announc       Date:  2013-02-28

8.  Human-to-bovine jump of Staphylococcus aureus CC8 is associated with the loss of a β-hemolysin converting prophage and the acquisition of a new staphylococcal cassette chromosome.

Authors:  Grégory Resch; Patrice François; Delphine Morisset; Milos Stojanov; Eve J Bonetti; Jacques Schrenzel; Olga Sakwinska; Philippe Moreillon
Journal:  PLoS One       Date:  2013-03-11       Impact factor: 3.240

9.  Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity.

Authors:  F H Sant'Anna; A V Lebedinsky; T G Sokolova; F T Robb; J M Gonzalez
Journal:  BMC Genomics       Date:  2015-10-07       Impact factor: 3.969

10.  Amplicon sequencing for the quantification of spoilage microbiota in complex foods including bacterial spores.

Authors:  Paulo de Boer; Martien Caspers; Jan-Willem Sanders; Robèr Kemperman; Janneke Wijman; Gijs Lommerse; Guus Roeselers; Roy Montijn; Tjakko Abee; Remco Kort
Journal:  Microbiome       Date:  2015-07-27       Impact factor: 14.650
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