Literature DB >> 24788326

Transformable facultative thermophile Geobacillus stearothermophilus NUB3621 as a host strain for metabolic engineering.

Kristen Blanchard1, Srebrenka Robic, Ichiro Matsumura.   

Abstract

Metabolic engineers develop inexpensive enantioselective syntheses of high-value compounds, but their designs are sometimes confounded by the misfolding of heterologously expressed proteins. Geobacillus stearothermophilus NUB3621 is a readily transformable facultative thermophile. It could be used to express and properly fold proteins derived from its many mesophilic or thermophilic Bacillaceae relatives or to direct the evolution of thermophilic variants of mesophilic proteins. Moreover, its capacity for high-temperature growth should accelerate chemical transformation rates in accordance with the Arrhenius equation and reduce the risks of microbial contamination. Its tendency to sporulate in response to nutrient depletion lowers the costs of storage and transportation. Here, we present a draft genome sequence of G. stearothermophilus NUB3621 and describe inducible and constitutive expression plasmids that function in this organism. These tools will help us and others to exploit the natural advantages of this system for metabolic engineering applications.

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Year:  2014        PMID: 24788326      PMCID: PMC4251812          DOI: 10.1007/s00253-014-5746-z

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  43 in total

1.  Codon usage tabulated from international DNA sequence databases: status for the year 2000.

Authors:  Y Nakamura; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  Stability and stabilization of globular proteins in solution.

Authors:  R Jaenicke
Journal:  J Biotechnol       Date:  2000-05-26       Impact factor: 3.307

3.  Temperature-induced protein synthesis in Bacillus stearothermophilus NUB36.

Authors:  L Wu; N E Welker
Journal:  J Bacteriol       Date:  1991-08       Impact factor: 3.490

4.  Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir.

Authors:  Lu Feng; Wei Wang; Jiansong Cheng; Yi Ren; Guang Zhao; Chunxu Gao; Yun Tang; Xueqian Liu; Weiqing Han; Xia Peng; Rulin Liu; Lei Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

5.  Purification and properties of human alpha-galactosidases.

Authors:  E Beutler; W Kuhl
Journal:  J Biol Chem       Date:  1972-11-25       Impact factor: 5.157

6.  Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.

Authors:  Hideto Takami; Yoshihiro Takaki; Gab-Joo Chee; Shinro Nishi; Shigeru Shimamura; Hiroko Suzuki; Satomi Matsui; Ikuo Uchiyama
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

7.  Genetic map of the Bacillus stearothermophilus NUB36 chromosome.

Authors:  H Vallier; N E Welker
Journal:  J Bacteriol       Date:  1990-02       Impact factor: 3.490

8.  Genetic analysis of Bacillus stearothermophilus by protoplast fusion.

Authors:  Z F Chen; S F Wojcik; N E Welker
Journal:  J Bacteriol       Date:  1986-03       Impact factor: 3.490

9.  Development of a versatile shuttle vector for gene expression in Geobacillus spp.

Authors:  Mark P Taylor; Carlos D Esteban; David J Leak
Journal:  Plasmid       Date:  2008-05-23       Impact factor: 3.466

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

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  11 in total

1.  A plasmid vector that directs hyperproduction of recombinant proteins in the thermophiles Geobacillus species.

Authors:  Ryota Kurashiki; Tatsuki Mizuno; Kurumi Murata; Takashi Ohshiro; Hirokazu Suzuki
Journal:  Extremophiles       Date:  2019-11-07       Impact factor: 2.395

2.  Isolation and screening of thermophilic bacilli from compost for electrotransformation and fermentation: characterization of Bacillus smithii ET 138 as a new biocatalyst.

Authors:  Elleke F Bosma; Antonius H P van de Weijer; Martinus J A Daas; John van der Oost; Willem M de Vos; Richard van Kranenburg
Journal:  Appl Environ Microbiol       Date:  2015-01-02       Impact factor: 4.792

3.  New Platform for Screening Genetic Libraries at Elevated Temperatures: Biological and Genomic Information and Genetic Tools of Geobacillus thermodenitrificans K1041.

Authors:  Kosuke Koyama; Yui Mikawa; Shota Nakagawa; Ryota Kurashiki; Takashi Ohshiro; Hirokazu Suzuki
Journal:  Appl Environ Microbiol       Date:  2022-09-07       Impact factor: 5.005

4.  Conjugative plasmid transfer from Escherichia coli is a versatile approach for genetic transformation of thermophilic Bacillus and Geobacillus species.

Authors:  Yurie Tominaga; Takashi Ohshiro; Hirokazu Suzuki
Journal:  Extremophiles       Date:  2016-03-01       Impact factor: 2.395

5.  Genetic toolbox for controlled expression of functional proteins in Geobacillus spp.

Authors:  Ivan Pogrebnyakov; Christian Bille Jendresen; Alex Toftgaard Nielsen
Journal:  PLoS One       Date:  2017-02-02       Impact factor: 3.240

6.  Insights into the Geobacillus stearothermophilus species based on phylogenomic principles.

Authors:  S A Burgess; S H Flint; D Lindsay; M P Cox; P J Biggs
Journal:  BMC Microbiol       Date:  2017-06-26       Impact factor: 3.605

7.  Some (bacilli) like it hot: genomics of Geobacillus species.

Authors:  David J Studholme
Journal:  Microb Biotechnol       Date:  2014-09-05       Impact factor: 5.813

8.  Isolation of a genetically accessible thermophilic xylan degrading bacterium from compost.

Authors:  Martinus J A Daas; Antonius H P van de Weijer; Willem M de Vos; John van der Oost; Richard van Kranenburg
Journal:  Biotechnol Biofuels       Date:  2016-10-06       Impact factor: 6.040

9.  In vivo selection of sfGFP variants with improved and reliable functionality in industrially important thermophilic bacteria.

Authors:  Elrike Frenzel; Jelmer Legebeke; Atze van Stralen; Richard van Kranenburg; Oscar P Kuipers
Journal:  Biotechnol Biofuels       Date:  2018-01-17       Impact factor: 6.040

Review 10.  Genetic Tools and Techniques for Recombinant Expression in Thermophilic Bacillaceae.

Authors:  Eivind B Drejer; Sigrid Hakvåg; Marta Irla; Trygve Brautaset
Journal:  Microorganisms       Date:  2018-05-10
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