Literature DB >> 22810296

On WD40 proteins: propelling our knowledge of transcriptional control?

Valentina Migliori1, Marina Mapelli, Ernesto Guccione.   

Abstract

A direct effect of post-translational modifications (PTMs) on nucleosomes is the formation of a dynamic platform able to assemble the transcriptional machinery and to recruit chromatin modifiers. The histone code hypothesis suggests that histone PTMs can act as binding sites for chromatin readers and effector proteins, such as the bromodomains, that selectively interact with acetylated lysines, or the "Royal family" and the PHD finger domains, which are able to recognize methylated arginines and lysines. In this review we will discuss recent data describing the function of WD40 proteins as a new class of histone readers, with particular emphasis on the ones able to recognize methylated arginine and lysine residues. We will discuss how WDR5, a classical seven-bladed WD40 propeller, is able to bind with similar affinities both the catalytic subunit of the Trithorax-like complexes, and the histone H3 tail either unmodified or symmetrically dimethylated on arginine 2 (H3R2me2s). Furthermore, we will speculate on how these mutually exclusive interactions of WDR5 may play a role in mediating different degrees of H3K4 methylations at both promoters and distal regulatory sites. Finally, we will summarize recent literature elucidating how other WD40 proteins such as NURF55, EED and LRWD1 recognize methylated histone tails, highlighting similarities and differences among them.

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Year:  2012        PMID: 22810296      PMCID: PMC3427277          DOI: 10.4161/epi.21140

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  64 in total

1.  Repetitive segmental structure of the transducin beta subunit: homology with the CDC4 gene and identification of related mRNAs.

Authors:  H K Fong; J B Hurley; R S Hopkins; R Miake-Lye; M S Johnson; R F Doolittle; M I Simon
Journal:  Proc Natl Acad Sci U S A       Date:  1986-04       Impact factor: 11.205

2.  Ubiquitin-dependent degradation of IkappaBalpha is mediated by a ubiquitin ligase Skp1/Cul 1/F-box protein FWD1.

Authors:  S Hatakeyama; M Kitagawa; K Nakayama; M Shirane; M Matsumoto; K Hattori; H Higashi; H Nakano; K Okumura; K Onoé; R A Good; K Nakayama
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

3.  The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein.

Authors:  J K Tyler; M Bulger; R T Kamakaka; R Kobayashi; J T Kadonaga
Journal:  Mol Cell Biol       Date:  1996-11       Impact factor: 4.272

4.  The 2.0 A crystal structure of a heterotrimeric G protein.

Authors:  D G Lambright; J Sondek; A Bohm; N P Skiba; H E Hamm; P B Sigler
Journal:  Nature       Date:  1996-01-25       Impact factor: 49.962

5.  Crystal structure of a G-protein beta gamma dimer at 2.1A resolution.

Authors:  J Sondek; A Bohm; D G Lambright; H E Hamm; P B Sigler
Journal:  Nature       Date:  1996-01-25       Impact factor: 49.962

6.  The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.

Authors:  M A Wall; D E Coleman; E Lee; J A Iñiguez-Lluhi; B A Posner; A G Gilman; S R Sprang
Journal:  Cell       Date:  1995-12-15       Impact factor: 41.582

7.  A cellular protein that competes with SV40 T antigen for binding to the retinoblastoma gene product.

Authors:  S Huang; W H Lee; E Y Lee
Journal:  Nature       Date:  1991-03-14       Impact factor: 49.962

8.  Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4.

Authors:  A Verreault; P D Kaufman; R Kobayashi; B Stillman
Journal:  Cell       Date:  1996-10-04       Impact factor: 41.582

9.  The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism.

Authors:  M R Parthun; J Widom; D E Gottschling
Journal:  Cell       Date:  1996-10-04       Impact factor: 41.582

10.  Cytosolic Sec13p complex is required for vesicle formation from the endoplasmic reticulum in vitro.

Authors:  N K Pryer; N R Salama; R Schekman; C A Kaiser
Journal:  J Cell Biol       Date:  1993-02       Impact factor: 10.539

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  34 in total

Review 1.  Chromatin modifiers and histone modifications in bone formation, regeneration, and therapeutic intervention for bone-related disease.

Authors:  Jonathan A R Gordon; Janet L Stein; Jennifer J Westendorf; Andre J van Wijnen
Journal:  Bone       Date:  2015-03-31       Impact factor: 4.398

2.  Direct interaction between the WD40 repeat protein WDR-23 and SKN-1/Nrf inhibits binding to target DNA.

Authors:  Chi K Leung; Koichi Hasegawa; Ying Wang; Andrew Deonarine; Lanlan Tang; Johji Miwa; Keith P Choe
Journal:  Mol Cell Biol       Date:  2014-06-09       Impact factor: 4.272

3.  A novel mutation in EED associated with overgrowth.

Authors:  Ana S A Cohen; Beyhan Tuysuz; Yaoqing Shen; Sanjiv K Bhalla; Steven J M Jones; William T Gibson
Journal:  J Hum Genet       Date:  2015-03-19       Impact factor: 3.172

4.  An allosteric PRC2 inhibitor targeting the H3K27me3 binding pocket of EED.

Authors:  Wei Qi; Kehao Zhao; Justin Gu; Ying Huang; Youzhen Wang; Hailong Zhang; Man Zhang; Jeff Zhang; Zhengtian Yu; Ling Li; Lin Teng; Shannon Chuai; Chao Zhang; Mengxi Zhao; HoMan Chan; Zijun Chen; Douglas Fang; Qi Fei; Leying Feng; Lijian Feng; Yuan Gao; Hui Ge; Xinjian Ge; Guobin Li; Andreas Lingel; Ying Lin; Yueqin Liu; Fangjun Luo; Minlong Shi; Long Wang; Zhaofu Wang; Yanyan Yu; Jue Zeng; Chenhui Zeng; Lijun Zhang; Qiong Zhang; Shaolian Zhou; Counde Oyang; Peter Atadja; En Li
Journal:  Nat Chem Biol       Date:  2017-01-30       Impact factor: 15.040

5.  Orc2 protects ORCA from ubiquitin-mediated degradation.

Authors:  Zhen Shen; Supriya G Prasanth
Journal:  Cell Cycle       Date:  2012-08-30       Impact factor: 4.534

6.  Exchange Factor TBL1 and Arginine Methyltransferase PRMT6 Cooperate in Protecting G Protein Pathway Suppressor 2 (GPS2) from Proteasomal Degradation.

Authors:  Jiawen Huang; M Dafne Cardamone; Holly E Johnson; Mathieu Neault; Michelle Chan; Z Elizabeth Floyd; Frédérick A Mallette; Valentina Perissi
Journal:  J Biol Chem       Date:  2015-06-12       Impact factor: 5.157

Review 7.  The MYC-WDR5 Nexus and Cancer.

Authors:  Lance R Thomas; Audra M Foshage; April M Weissmiller; William P Tansey
Journal:  Cancer Res       Date:  2015-09-17       Impact factor: 12.701

8.  Crystal structure of the human PRMT5:MEP50 complex.

Authors:  Stephen Antonysamy; Zahid Bonday; Robert M Campbell; Brandon Doyle; Zhanna Druzina; Tarun Gheyi; Bomie Han; Louis N Jungheim; Yuewei Qian; Charles Rauch; Marijane Russell; J Michael Sauder; Stephen R Wasserman; Kenneth Weichert; Francis S Willard; Aiping Zhang; Spencer Emtage
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-15       Impact factor: 11.205

9.  Mutations in IFT172 cause isolated retinal degeneration and Bardet-Biedl syndrome.

Authors:  Kinga M Bujakowska; Qi Zhang; Anna M Siemiatkowska; Qin Liu; Emily Place; Marni J Falk; Mark Consugar; Marie-Elise Lancelot; Aline Antonio; Christine Lonjou; Wassila Carpentier; Saddek Mohand-Saïd; Anneke I den Hollander; Frans P M Cremers; Bart P Leroy; Xiaowu Gai; José-Alain Sahel; L Ingeborgh van den Born; Rob W J Collin; Christina Zeitz; Isabelle Audo; Eric A Pierce
Journal:  Hum Mol Genet       Date:  2014-08-28       Impact factor: 6.150

Review 10.  ATP-dependent chromatin remodeling complexes as novel targets for cancer therapy.

Authors:  Kimberly Mayes; Zhijun Qiu; Aiman Alhazmi; Joseph W Landry
Journal:  Adv Cancer Res       Date:  2014       Impact factor: 6.242

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