Literature DB >> 22807867

Ethyl 2-acet-amido-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Asma Mukhtar, M Nawaz Tahir, Misbahul Ain Khan, Abdul Qayyum Ather, Muhammad Naeem Khan.   

Abstract

In the title compound, C(13)H(17)NO(3)S, the dihedral angles between the thio-phene ring and the ethyl ester and acetamide groups are 5.21 (13) and 10.06 (16)°, respectively. The cyclo-hezene ring adopts a half-chair conformation. An S(6) ring is formed due to an intra-molecular N-H⋯O hydrogen bond. In the crystal, mol-ecules are linked by C-H⋯O inter-actions between the tetra-hydro-1-benzothio-phene unit and the ethyl ester group, forming C(7) chains propagating along the b-axis direction.

Entities:  

Year:  2012        PMID: 22807867      PMCID: PMC3393310          DOI: 10.1107/S160053681202524X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Mukhtar et al. (2010a ▶,b ▶).

Experimental

Crystal data

C13H17NO3S M = 267.34 Monoclinic, a = 10.4267 (4) Å b = 16.6554 (7) Å c = 8.0961 (3) Å β = 109.610 (1)° V = 1324.43 (9) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 K 0.28 × 0.20 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.953, T max = 0.958 9994 measured reflections 2389 independent reflections 1831 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.105 S = 1.05 2389 reflections 165 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202524X/hb6836sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202524X/hb6836Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202524X/hb6836Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H17NO3SF(000) = 568
Mr = 267.34Dx = 1.341 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1831 reflections
a = 10.4267 (4) Åθ = 2.4–25.3°
b = 16.6554 (7) ŵ = 0.24 mm1
c = 8.0961 (3) ÅT = 296 K
β = 109.610 (1)°Prism, colorless
V = 1324.43 (9) Å30.28 × 0.20 × 0.18 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2389 independent reflections
Radiation source: fine-focus sealed tube1831 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.4°
ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −19→19
Tmin = 0.953, Tmax = 0.958l = −9→9
9994 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0403P)2 + 0.4757P] where P = (Fo2 + 2Fc2)/3
2389 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.07735 (6)0.14705 (4)0.26031 (7)0.0539 (2)
O10.22774 (14)−0.08502 (9)0.4124 (2)0.0570 (5)
O2−0.31724 (17)0.09817 (13)0.0095 (2)0.0848 (8)
O30.03140 (16)−0.11247 (10)0.2017 (2)0.0646 (6)
N1−0.15117 (16)0.00537 (11)0.0871 (2)0.0514 (6)
C10.1049 (2)−0.06486 (13)0.3047 (3)0.0471 (7)
C20.06878 (18)0.01882 (12)0.3219 (2)0.0408 (6)
C30.14704 (19)0.07906 (12)0.4432 (2)0.0414 (6)
C40.2851 (2)0.06876 (13)0.5811 (3)0.0488 (7)
C50.3212 (3)0.13991 (14)0.7081 (3)0.0653 (8)
C60.2832 (3)0.21870 (14)0.6192 (3)0.0690 (9)
C70.1317 (2)0.22493 (13)0.5254 (3)0.0591 (8)
C80.0810 (2)0.14974 (12)0.4223 (3)0.0459 (7)
C9−0.05484 (19)0.04848 (13)0.2159 (3)0.0444 (7)
C100.2653 (3)−0.16924 (14)0.4095 (4)0.0742 (10)
C110.3917 (3)−0.18249 (18)0.5583 (4)0.0926 (13)
C12−0.2783 (2)0.03142 (17)−0.0096 (3)0.0592 (9)
C13−0.3644 (2)−0.02882 (17)−0.1363 (3)0.0729 (9)
H1−0.12894−0.042270.065810.0616*
H4A0.353400.063650.524670.0585*
H4B0.285940.019770.646240.0585*
H5A0.275010.133590.793240.0783*
H5B0.418410.139400.771200.0783*
H6A0.330360.225750.535370.0828*
H6B0.311930.261330.705450.0828*
H7A0.085530.232610.610170.0709*
H7B0.112220.270860.447240.0709*
H10A0.27966−0.181700.299950.0889*
H10B0.19331−0.203560.420150.0889*
H11A0.37805−0.166550.665140.1389*
H11B0.46381−0.151190.541980.1389*
H11C0.41548−0.238360.564660.1389*
H13A−0.41082−0.00295−0.246100.1095*
H13B−0.43007−0.05116−0.089770.1095*
H13C−0.30755−0.07092−0.154080.1095*
U11U22U33U12U13U23
S10.0487 (3)0.0506 (4)0.0574 (4)0.0098 (3)0.0112 (3)0.0046 (3)
O10.0475 (8)0.0389 (9)0.0741 (10)0.0041 (7)0.0066 (7)−0.0051 (7)
O20.0593 (11)0.0900 (15)0.0849 (13)0.0170 (10)−0.0024 (9)−0.0038 (11)
O30.0608 (10)0.0489 (10)0.0724 (10)−0.0073 (8)0.0068 (8)−0.0142 (8)
N10.0423 (10)0.0563 (12)0.0496 (10)−0.0041 (8)0.0077 (8)−0.0017 (9)
C10.0448 (12)0.0451 (13)0.0505 (12)−0.0040 (10)0.0148 (10)−0.0003 (10)
C20.0381 (10)0.0407 (12)0.0439 (11)−0.0022 (9)0.0142 (8)0.0012 (9)
C30.0441 (11)0.0401 (12)0.0407 (10)−0.0008 (9)0.0152 (9)0.0028 (9)
C40.0471 (12)0.0443 (12)0.0481 (12)−0.0007 (9)0.0069 (9)0.0002 (10)
C50.0655 (15)0.0544 (15)0.0590 (14)−0.0056 (12)−0.0015 (12)−0.0052 (12)
C60.0776 (17)0.0502 (15)0.0660 (15)−0.0082 (12)0.0067 (13)−0.0079 (12)
C70.0723 (16)0.0418 (14)0.0577 (13)0.0061 (11)0.0147 (12)−0.0016 (10)
C80.0488 (12)0.0424 (12)0.0461 (11)0.0033 (9)0.0154 (9)0.0028 (10)
C90.0428 (11)0.0465 (12)0.0448 (11)−0.0016 (9)0.0159 (9)0.0035 (9)
C100.0717 (17)0.0403 (14)0.103 (2)0.0095 (12)0.0192 (15)−0.0085 (13)
C110.0626 (17)0.0620 (18)0.139 (3)0.0162 (14)0.0149 (18)0.0113 (18)
C120.0469 (13)0.0751 (18)0.0500 (13)−0.0002 (12)0.0087 (10)0.0071 (12)
C130.0527 (14)0.096 (2)0.0562 (14)−0.0106 (14)0.0001 (11)0.0007 (14)
S1—C81.731 (2)C10—C111.474 (4)
S1—C91.714 (2)C12—C131.499 (4)
O1—C11.328 (3)C4—H4A0.9700
O1—C101.459 (3)C4—H4B0.9700
O2—C121.211 (3)C5—H5A0.9700
O3—C11.218 (3)C5—H5B0.9700
N1—C91.382 (3)C6—H6A0.9700
N1—C121.364 (3)C6—H6B0.9700
N1—H10.8600C7—H7A0.9700
C1—C21.463 (3)C7—H7B0.9700
C2—C91.378 (3)C10—H10A0.9700
C2—C31.449 (3)C10—H10B0.9700
C3—C41.506 (3)C11—H11A0.9600
C3—C81.346 (3)C11—H11B0.9600
C4—C51.531 (3)C11—H11C0.9600
C5—C61.485 (3)C13—H13A0.9600
C6—C71.509 (4)C13—H13B0.9600
C7—C81.499 (3)C13—H13C0.9600
C8—S1—C991.19 (10)C4—C5—H5A109.00
C1—O1—C10115.95 (19)C4—C5—H5B109.00
C9—N1—C12126.0 (2)C6—C5—H5A109.00
C9—N1—H1117.00C6—C5—H5B109.00
C12—N1—H1117.00H5A—C5—H5B108.00
O1—C1—O3122.1 (2)C5—C6—H6A109.00
O3—C1—C2124.3 (2)C5—C6—H6B109.00
O1—C1—C2113.63 (18)C7—C6—H6A109.00
C1—C2—C9119.95 (18)C7—C6—H6B109.00
C1—C2—C3128.32 (17)H6A—C6—H6B108.00
C3—C2—C9111.72 (18)C6—C7—H7A110.00
C2—C3—C8111.88 (17)C6—C7—H7B110.00
C2—C3—C4127.17 (18)C8—C7—H7A110.00
C4—C3—C8120.95 (18)C8—C7—H7B110.00
C3—C4—C5111.59 (19)H7A—C7—H7B108.00
C4—C5—C6113.14 (19)O1—C10—H10A110.00
C5—C6—C7111.6 (2)O1—C10—H10B110.00
C6—C7—C8109.67 (18)C11—C10—H10A110.00
C3—C8—C7126.2 (2)C11—C10—H10B110.00
S1—C8—C3112.99 (16)H10A—C10—H10B108.00
S1—C8—C7120.80 (16)C10—C11—H11A109.00
N1—C9—C2125.09 (19)C10—C11—H11B109.00
S1—C9—N1122.70 (16)C10—C11—H11C109.00
S1—C9—C2112.22 (16)H11A—C11—H11B109.00
O1—C10—C11107.6 (2)H11A—C11—H11C109.00
N1—C12—C13115.0 (2)H11B—C11—H11C109.00
O2—C12—N1121.4 (2)C12—C13—H13A109.00
O2—C12—C13123.5 (2)C12—C13—H13B109.00
C3—C4—H4A109.00C12—C13—H13C109.00
C3—C4—H4B109.00H13A—C13—H13B109.00
C5—C4—H4A109.00H13A—C13—H13C110.00
C5—C4—H4B109.00H13B—C13—H13C109.00
H4A—C4—H4B108.00
C9—S1—C8—C3−0.74 (18)C9—C2—C3—C4178.71 (19)
C9—S1—C8—C7−179.82 (19)C9—C2—C3—C8−0.6 (2)
C8—S1—C9—N1−179.31 (19)C1—C2—C9—S1179.01 (15)
C8—S1—C9—C20.37 (17)C1—C2—C9—N1−1.3 (3)
C10—O1—C1—O3−4.5 (3)C3—C2—C9—S10.0 (2)
C10—O1—C1—C2175.9 (2)C3—C2—C9—N1179.72 (19)
C1—O1—C10—C11−169.7 (2)C2—C3—C4—C5−167.96 (19)
C12—N1—C9—S1−5.9 (3)C8—C3—C4—C511.3 (3)
C12—N1—C9—C2174.4 (2)C2—C3—C8—S10.9 (2)
C9—N1—C12—O21.2 (4)C2—C3—C8—C7179.9 (2)
C9—N1—C12—C13−177.8 (2)C4—C3—C8—S1−178.48 (15)
O1—C1—C2—C3−2.4 (3)C4—C3—C8—C70.6 (3)
O1—C1—C2—C9178.80 (19)C3—C4—C5—C6−41.8 (3)
O3—C1—C2—C3178.0 (2)C4—C5—C6—C761.4 (3)
O3—C1—C2—C9−0.8 (3)C5—C6—C7—C8−46.2 (3)
C1—C2—C3—C4−0.2 (3)C6—C7—C8—S1−164.26 (17)
C1—C2—C3—C8−179.5 (2)C6—C7—C8—C316.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O30.862.032.674 (2)131
C7—H7B···O3i0.972.503.392 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O30.862.032.674 (2)131
C7—H7B⋯O3i 0.972.503.392 (3)153

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 2-benzamido-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Authors:  Asma Mukhtar; M Nawaz Tahir; Misbahul Ain Khan; Muhammad Naeem Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30

3.  Diethyl 5-acetamido-3-methyl-thio-phene-2,4-dicarboxyl-ate.

Authors:  Asma Mukhtar; M Nawaz Tahir; Misbahul Ain Khan; Muhammad Naeem Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.