Literature DB >> 21587623

Ethyl 2-benzamido-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Asma Mukhtar, M Nawaz Tahir, Misbahul Ain Khan, Muhammad Naeem Khan.   

Abstract

The mol-ecule of the title compound, C(18)H(19)NO(3)S, adopts an approximately planar conformation: the thio-phene and phenyl rings form a dihedral angle of 8.13 (11)° while the ethyl ester group (r.m.s. deviation = 0.0217 Å) is inclined at 1.25 (14) and 8.61 (13)°, respectively, to the thio-phene and phenyl rings. An intra-molecular N-H⋯O hydrogen bond with an S(6) ring motif occurs as well as an intra-molecular S⋯O hypervalent inter-action [S⋯O = 2.7369 (18) Å]. The cyclo-hexene ring adopts a half-chair conformation and is disordered over two positions with site occupation factors of 0.641 (6) and 0.359 (6). In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R(2) (2)(10) loops.

Entities:  

Year:  2010        PMID: 21587623      PMCID: PMC2983258          DOI: 10.1107/S1600536810037761

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on thio­phene derivatives, see: Dupin et al. (2002 ▶); Khan & Rolim (1983 ▶); Sabnis et al. (1999 ▶). For related structures, see: Harrison et al. (2006 ▶); Yathirajan et al. (2007 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C18H19NO3S M = 329.40 Monoclinic, a = 8.1061 (2) Å b = 10.6593 (3) Å c = 19.0554 (5) Å β = 92.500 (1)° V = 1644.92 (8) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.953, T max = 0.958 12204 measured reflections 2964 independent reflections 2052 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.117 S = 1.01 2964 reflections 210 parameters 6 restraints H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks text, I. DOI: 10.1107/S1600536810037761/gk2302sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037761/gk2302Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H19NO3SF(000) = 696
Mr = 329.40Dx = 1.330 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2052 reflections
a = 8.1061 (2) Åθ = 2.5–25.3°
b = 10.6593 (3) ŵ = 0.21 mm1
c = 19.0554 (5) ÅT = 296 K
β = 92.500 (1)°Prism, colorless
V = 1644.92 (8) Å30.25 × 0.20 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2964 independent reflections
Radiation source: fine-focus sealed tube2052 reflections with I > 2σ(I)
graphiteRint = 0.037
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.5°
ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −12→12
Tmin = 0.953, Tmax = 0.958l = −22→22
12204 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0503P)2 + 0.4332P] where P = (Fo2 + 2Fc2)/3
2964 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 0.16 e Å3
6 restraintsΔρmin = −0.19 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.75739 (8)0.64947 (6)0.09851 (3)0.0685 (2)
O10.9000 (2)0.82309 (16)0.01442 (9)0.0875 (7)
O20.8026 (2)0.41537 (14)−0.09850 (7)0.0658 (6)
O30.6816 (2)0.26412 (14)−0.03830 (7)0.0666 (6)
N10.8625 (2)0.63457 (16)−0.03524 (8)0.0527 (6)
C10.9770 (3)0.8019 (2)−0.10411 (11)0.0545 (7)
C20.9702 (3)0.7346 (2)−0.16629 (12)0.0679 (9)
C31.0262 (3)0.7864 (3)−0.22706 (13)0.0781 (10)
C41.0909 (3)0.9047 (3)−0.22675 (14)0.0804 (11)
C51.1013 (3)0.9711 (3)−0.16569 (16)0.0830 (11)
C61.0438 (3)0.9216 (2)−0.10479 (13)0.0697 (9)
C70.9121 (3)0.7563 (2)−0.03689 (12)0.0582 (8)
C80.7865 (2)0.5770 (2)0.01970 (10)0.0484 (7)
C90.7256 (2)0.45660 (19)0.01795 (10)0.0464 (7)
C100.6520 (2)0.4227 (2)0.08292 (10)0.0505 (7)
C110.5695 (3)0.2999 (2)0.09967 (11)0.0615 (8)
C12A0.5302 (8)0.2864 (5)0.1768 (3)0.0771 (13)0.641 (6)
C13A0.4684 (7)0.4071 (4)0.2069 (3)0.0771 (13)0.641 (6)
C140.5952 (3)0.5146 (3)0.20270 (12)0.0820 (10)
C150.6620 (3)0.5167 (2)0.12986 (11)0.0601 (8)
C160.7408 (3)0.3798 (2)−0.04470 (11)0.0518 (7)
C170.6953 (4)0.1819 (2)−0.09806 (13)0.0804 (10)
C180.6130 (4)0.0615 (3)−0.08052 (16)0.1017 (13)
C12B0.4639 (11)0.3191 (11)0.1642 (4)0.0771 (13)0.359 (6)
C13B0.5564 (13)0.3883 (8)0.2231 (4)0.0771 (13)0.359 (6)
H10.880060.58943−0.071570.0632*
H41.127710.93963−0.267970.0964*
H20.927510.65362−0.167050.0815*
H31.019810.74051−0.268600.0936*
H11A0.641110.231420.086920.0738*
H11B0.467740.292690.071200.0738*
H12A0.447090.221780.181360.0926*0.641 (6)
H12B0.628870.260100.203380.0926*0.641 (6)
H13A0.443020.393690.255570.0926*0.641 (6)
H13B0.367030.431380.181470.0926*0.641 (6)
H14A0.542760.594090.212470.0985*
H14B0.684760.501680.237380.0985*
H17A0.810520.16736−0.107240.0962*
H17B0.641830.21915−0.139550.0962*
H18A0.665590.02642−0.038880.1525*
H18B0.621800.00366−0.118810.1525*
H18C0.498610.07682−0.072590.1525*
H51.147761.05084−0.165170.0996*
H61.049690.96880−0.063710.0837*
H12C0.365490.366160.150210.0926*0.359 (6)
H12D0.429290.237980.181300.0926*0.359 (6)
H13C0.489490.390360.264020.0926*0.359 (6)
H13D0.657700.343710.235640.0926*0.359 (6)
U11U22U33U12U13U23
S10.0836 (4)0.0704 (4)0.0522 (3)−0.0085 (3)0.0127 (3)−0.0147 (3)
O10.1332 (16)0.0676 (12)0.0634 (10)−0.0298 (11)0.0243 (10)−0.0167 (9)
O20.0950 (11)0.0567 (10)0.0472 (9)−0.0046 (8)0.0196 (8)−0.0014 (7)
O30.0983 (12)0.0495 (9)0.0532 (9)−0.0073 (8)0.0168 (8)−0.0036 (7)
N10.0610 (11)0.0512 (11)0.0463 (10)−0.0008 (8)0.0086 (8)−0.0027 (8)
C10.0553 (12)0.0529 (13)0.0555 (13)−0.0032 (10)0.0045 (10)0.0017 (11)
C20.0746 (15)0.0689 (16)0.0609 (14)−0.0185 (12)0.0098 (12)−0.0028 (13)
C30.0868 (18)0.089 (2)0.0591 (15)−0.0080 (15)0.0115 (13)−0.0011 (14)
C40.0936 (19)0.0776 (19)0.0714 (17)0.0040 (15)0.0196 (14)0.0237 (16)
C50.101 (2)0.0565 (16)0.093 (2)−0.0055 (14)0.0221 (16)0.0151 (15)
C60.0878 (17)0.0550 (15)0.0670 (15)−0.0053 (12)0.0108 (13)0.0003 (12)
C70.0642 (14)0.0529 (14)0.0576 (13)−0.0069 (11)0.0053 (10)−0.0027 (12)
C80.0476 (11)0.0559 (13)0.0418 (11)0.0043 (10)0.0031 (9)−0.0007 (9)
C90.0489 (11)0.0482 (12)0.0420 (11)0.0049 (9)0.0025 (9)0.0029 (9)
C100.0485 (12)0.0593 (14)0.0439 (11)0.0080 (10)0.0039 (9)0.0047 (10)
C110.0621 (13)0.0656 (15)0.0576 (13)0.0034 (11)0.0117 (10)0.0105 (11)
C12A0.076 (3)0.098 (2)0.0587 (18)0.004 (2)0.0198 (18)0.0171 (15)
C13A0.076 (3)0.098 (2)0.0587 (18)0.004 (2)0.0198 (18)0.0171 (15)
C140.0943 (18)0.105 (2)0.0479 (13)0.0045 (16)0.0172 (12)−0.0045 (14)
C150.0626 (14)0.0730 (16)0.0452 (12)0.0009 (11)0.0096 (10)−0.0011 (11)
C160.0594 (13)0.0505 (13)0.0456 (12)0.0025 (10)0.0044 (10)0.0043 (10)
C170.127 (2)0.0565 (15)0.0587 (15)−0.0111 (15)0.0169 (14)−0.0116 (12)
C180.154 (3)0.0614 (18)0.090 (2)−0.0203 (18)0.0097 (19)−0.0084 (16)
C12B0.076 (3)0.098 (2)0.0587 (18)0.004 (2)0.0198 (18)0.0171 (15)
C13B0.076 (3)0.098 (2)0.0587 (18)0.004 (2)0.0198 (18)0.0171 (15)
S1—C81.714 (2)C13B—C141.440 (9)
S1—C151.732 (2)C14—C151.512 (3)
O1—C71.217 (3)C17—C181.491 (4)
O2—C161.221 (3)C2—H20.9300
O3—C161.331 (3)C3—H30.9300
O3—C171.445 (3)C4—H40.9300
N1—C71.359 (3)C5—H50.9300
N1—C81.381 (2)C6—H60.9300
N1—H10.8600C11—H11A0.9700
C1—C21.384 (3)C11—H11B0.9700
C1—C61.386 (3)C12A—H12A0.9700
C1—C71.488 (3)C12A—H12B0.9700
C2—C31.378 (3)C12B—H12D0.9700
C3—C41.366 (4)C12B—H12C0.9700
C4—C51.361 (4)C13A—H13B0.9700
C5—C61.375 (4)C13A—H13A0.9700
C8—C91.375 (3)C13B—H13C0.9700
C9—C101.444 (3)C13B—H13D0.9700
C9—C161.457 (3)C14—H14A0.9700
C10—C151.343 (3)C14—H14B0.9700
C10—C111.510 (3)C17—H17A0.9700
C11—C12A1.524 (6)C17—H17B0.9700
C11—C12B1.542 (8)C18—H18B0.9600
C12A—C13A1.503 (7)C18—H18C0.9600
C12B—C13B1.514 (12)C18—H18A0.9600
C13A—C141.544 (6)
C8—S1—C1590.83 (10)C1—C6—H6120.00
C16—O3—C17116.70 (17)C5—C6—H6120.00
C7—N1—C8125.72 (18)C10—C11—H11A109.00
C7—N1—H1117.00C10—C11—H11B109.00
C8—N1—H1117.00C12A—C11—H11A109.00
C2—C1—C6118.0 (2)C12A—C11—H11B109.00
C2—C1—C7124.4 (2)H11A—C11—H11B108.00
C6—C1—C7117.5 (2)C12B—C11—H11A131.00
C1—C2—C3120.6 (2)C12B—C11—H11B88.00
C2—C3—C4120.5 (2)C11—C12A—H12A109.00
C3—C4—C5119.6 (3)C11—C12A—H12B109.00
C4—C5—C6120.8 (3)C13A—C12A—H12A109.00
C1—C6—C5120.5 (2)C13A—C12A—H12B109.00
O1—C7—C1123.0 (2)H12A—C12A—H12B108.00
O1—C7—N1120.4 (2)C13B—C12B—H12C109.00
N1—C7—C1116.61 (19)C11—C12B—H12C109.00
S1—C8—C9112.26 (14)C11—C12B—H12D109.00
S1—C8—N1123.14 (16)C13B—C12B—H12D109.00
N1—C8—C9124.60 (18)H12C—C12B—H12D108.00
C8—C9—C16120.08 (17)C12A—C13A—H13A109.00
C10—C9—C16127.95 (18)C14—C13A—H13A109.00
C8—C9—C10111.98 (17)C14—C13A—H13B109.00
C11—C10—C15121.34 (18)C12A—C13A—H13B109.00
C9—C10—C11126.98 (18)H13A—C13A—H13B108.00
C9—C10—C15111.67 (19)C14—C13B—H13C109.00
C10—C11—C12B108.7 (5)C14—C13B—H13D109.00
C10—C11—C12A113.5 (3)C12B—C13B—H13C109.00
C11—C12A—C13A112.0 (4)C12B—C13B—H13D109.00
C11—C12B—C13B112.4 (7)H13C—C13B—H13D108.00
C12A—C13A—C14112.4 (4)C13A—C14—H14A110.00
C12B—C13B—C14111.2 (7)C13A—C14—H14B110.00
C13A—C14—C15108.9 (3)C15—C14—H14A110.00
C13B—C14—C15110.7 (4)C13B—C14—H14A131.00
S1—C15—C10113.26 (16)C13B—C14—H14B81.00
S1—C15—C14120.80 (18)C15—C14—H14B110.00
C10—C15—C14125.9 (2)H14A—C14—H14B108.00
O2—C16—C9124.47 (19)C18—C17—H17A110.00
O3—C16—C9113.69 (18)O3—C17—H17A110.00
O2—C16—O3121.84 (19)O3—C17—H17B110.00
O3—C17—C18107.2 (2)H17A—C17—H17B109.00
C1—C2—H2120.00C18—C17—H17B110.00
C3—C2—H2120.00C17—C18—H18C109.00
C2—C3—H3120.00C17—C18—H18B109.00
C4—C3—H3120.00H18B—C18—H18C109.00
C3—C4—H4120.00H18A—C18—H18B109.00
C5—C4—H4120.00H18A—C18—H18C109.00
C4—C5—H5120.00C17—C18—H18A109.00
C6—C5—H5120.00
C15—S1—C8—N1179.88 (17)S1—C8—C9—C100.33 (19)
C15—S1—C8—C9−0.02 (15)S1—C8—C9—C16−179.36 (15)
C8—S1—C15—C10−0.32 (18)N1—C8—C9—C10−179.57 (16)
C8—S1—C15—C14−178.7 (2)N1—C8—C9—C160.8 (3)
C17—O3—C16—O20.5 (3)C8—C9—C10—C11178.53 (18)
C17—O3—C16—C9−178.9 (2)C8—C9—C10—C15−0.6 (2)
C16—O3—C17—C18−176.8 (2)C16—C9—C10—C11−1.8 (3)
C8—N1—C7—O14.4 (3)C16—C9—C10—C15179.1 (2)
C8—N1—C7—C1−174.38 (19)C8—C9—C16—O2−1.6 (3)
C7—N1—C8—S1−5.3 (3)C8—C9—C16—O3177.88 (18)
C7—N1—C8—C9174.55 (19)C10—C9—C16—O2178.8 (2)
C6—C1—C2—C3−0.9 (4)C10—C9—C16—O3−1.8 (3)
C7—C1—C2—C3176.9 (2)C9—C10—C11—C12A170.4 (3)
C2—C1—C6—C50.0 (4)C15—C10—C11—C12A−10.6 (4)
C7—C1—C6—C5−178.0 (2)C9—C10—C15—S10.6 (2)
C2—C1—C7—O1−170.1 (2)C9—C10—C15—C14178.9 (2)
C2—C1—C7—N18.6 (3)C11—C10—C15—S1−178.60 (16)
C6—C1—C7—O17.7 (4)C11—C10—C15—C14−0.3 (3)
C6—C1—C7—N1−173.6 (2)C10—C11—C12A—C13A39.9 (5)
C1—C2—C3—C40.7 (4)C11—C12A—C13A—C14−59.8 (6)
C2—C3—C4—C50.6 (4)C12A—C13A—C14—C1546.7 (5)
C3—C4—C5—C6−1.6 (4)C13A—C14—C15—S1160.7 (3)
C4—C5—C6—C11.3 (4)C13A—C14—C15—C10−17.5 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.862.022.664 (2)131
C6—H6···O1i0.932.443.242 (3)145
C11—H11A···O30.972.452.845 (3)104
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O20.862.022.664 (2)131
C6—H6⋯O1i0.932.443.242 (3)145

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and thrombolytic activity of new thienopyrimidinone derivatives.

Authors:  J P Dupin; R J Gryglewski; D Gravier; G Hou; F Casadebaig; J Swies; S Chlopicki
Journal:  J Physiol Pharmacol       Date:  2002-12       Impact factor: 3.011

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  5 in total

1.  (4Z)-4-[(2E)-1-Hy-droxy-3-(3-nitro-phen-yl)prop-2-en-1-yl-idene]-3-methyl-1-(4-methyl-phen-yl)-1H-pyrazol-5(4H)-one.

Authors:  Faryal Chaudhry; M Nawaz Tahir; Misbahul Ain Khan; Abdul Qayyum Ather; Nadia Asif
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

2.  Diethyl 5-acetamido-3-methyl-thio-phene-2,4-dicarboxyl-ate.

Authors:  Asma Mukhtar; M Nawaz Tahir; Misbahul Ain Khan; Muhammad Naeem Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

3.  Ethyl 2-acet-amido-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Authors:  Asma Mukhtar; M Nawaz Tahir; Misbahul Ain Khan; Abdul Qayyum Ather; Muhammad Naeem Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

4.  Ethyl 2-(pyridine-4-carboxamido)-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Authors:  Asma Mukhtar; M Nawaz Tahir; Misbahul Ain Khan; Abdul Qayyum Ather; Naveed Sajid
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

5.  Crystal structure of ethyl 5-acetyl-2-{[(di-methyl-amino)-methyl-idene]amino}-4-methyl-thio-phene-3-carboxyl-ate.

Authors:  N L Prasad; M S Krishnamurthy; H Nagarajaiah; Noor Shahina Begum
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-09-17
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.