Literature DB >> 21589467

Diethyl 5-acetamido-3-methyl-thio-phene-2,4-dicarboxyl-ate.

Asma Mukhtar, M Nawaz Tahir, Misbahul Ain Khan, Muhammad Naeem Khan.   

Abstract

The title compound, C(13)H(17)NO(5)S, is approximately planar (r.m.s. deviation for the non-H atoms = 0.055 Å). Its conformation is stabilized by N-H⋯O and C-H⋯O hydrogen bonds, which both generate S(6) rings. The crystal packing only features van der Waals contacts.

Entities:  

Year:  2010        PMID: 21589467      PMCID: PMC3011754          DOI: 10.1107/S1600536810045629

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related crystal structure and background, see: Mukhtar et al. (2010 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H17NO5S M = 299.34 Monoclinic, a = 15.933 (3) Å b = 4.6028 (6) Å c = 20.152 (3) Å β = 106.005 (7)° V = 1420.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 296 K 0.25 × 0.10 × 0.08 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.972, T max = 0.983 10222 measured reflections 2518 independent reflections 1311 reflections with I > 2σ(I) R int = 0.094

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.172 S = 1.02 2518 reflections 186 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810045629/hb5730sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045629/hb5730Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H17NO5SF(000) = 632
Mr = 299.34Dx = 1.400 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1311 reflections
a = 15.933 (3) Åθ = 2.1–25.1°
b = 4.6028 (6) ŵ = 0.25 mm1
c = 20.152 (3) ÅT = 296 K
β = 106.005 (7)°Needle, orange
V = 1420.6 (4) Å30.25 × 0.10 × 0.08 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2518 independent reflections
Radiation source: fine-focus sealed tube1311 reflections with I > 2σ(I)
graphiteRint = 0.094
Detector resolution: 8.20 pixels mm-1θmax = 25.1°, θmin = 2.1°
ω scansh = −18→18
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −5→5
Tmin = 0.972, Tmax = 0.983l = −20→24
10222 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.065H-atom parameters constrained
wR(F2) = 0.172w = 1/[σ2(Fo2) + (0.0583P)2 + 0.3244P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2518 reflectionsΔρmax = 0.25 e Å3
186 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.011 (2)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.31949 (8)0.0384 (2)0.49921 (6)0.0506 (5)
O10.2674 (2)0.0997 (7)0.35864 (17)0.0745 (17)
O20.1065 (2)0.7124 (7)0.48056 (18)0.0619 (12)
O30.1245 (2)0.6438 (6)0.59347 (17)0.0568 (12)
O40.4142 (3)−0.1121 (7)0.6963 (2)0.0805 (17)
O50.4407 (2)−0.2748 (6)0.59982 (16)0.0583 (11)
N10.1981 (2)0.3879 (7)0.4170 (2)0.0505 (16)
C10.2371 (3)0.2886 (8)0.4826 (3)0.0431 (16)
C20.2152 (3)0.3811 (9)0.5411 (2)0.0441 (17)
C30.2680 (3)0.2433 (9)0.6015 (2)0.0448 (16)
C40.3277 (3)0.0560 (9)0.5869 (2)0.0470 (17)
C50.2156 (3)0.2958 (10)0.3575 (3)0.058 (2)
C60.1661 (3)0.4472 (11)0.2930 (3)0.072 (2)
C70.1450 (3)0.5918 (9)0.5342 (3)0.0504 (19)
C80.0519 (3)0.8434 (10)0.5883 (3)0.0568 (19)
C90.0353 (4)0.8550 (11)0.6579 (3)0.081 (2)
C100.2625 (3)0.2958 (10)0.6742 (2)0.0622 (19)
C110.3963 (3)−0.1159 (10)0.6338 (3)0.0559 (19)
C120.5140 (3)−0.4391 (10)0.6418 (3)0.067 (2)
C130.5539 (3)−0.6035 (10)0.5932 (3)0.0692 (19)
H10.159020.520600.412850.0604*
H6A0.186420.381220.254960.1074*
H6B0.174960.653040.298520.1074*
H6C0.104960.404580.284010.1074*
H8A0.000310.775090.553960.0687*
H8B0.066551.035160.574950.0687*
H9A0.085480.934270.690890.1219*
H9B0.024300.662370.671770.1219*
H9C−0.014570.975650.655610.1219*
H10A0.274470.496560.686030.0934*
H10B0.304620.176220.705760.0934*
H10C0.204970.248020.677130.0934*
H12A0.49428−0.573460.671460.0802*
H12B0.55670−0.309050.670640.0802*
H13A0.57324−0.468350.564190.1038*
H13B0.51108−0.731560.565000.1038*
H13C0.60277−0.714980.619360.1038*
U11U22U33U12U13U23
S10.0497 (8)0.0563 (7)0.0508 (9)0.0004 (6)0.0222 (6)−0.0001 (6)
O10.081 (3)0.088 (3)0.057 (3)0.026 (2)0.023 (2)−0.0013 (19)
O20.063 (2)0.076 (2)0.052 (2)0.0152 (18)0.025 (2)0.0064 (18)
O30.056 (2)0.068 (2)0.054 (2)0.0086 (16)0.0279 (18)0.0036 (16)
O40.095 (3)0.094 (3)0.050 (3)0.029 (2)0.016 (2)0.005 (2)
O50.055 (2)0.0638 (19)0.057 (2)0.0108 (16)0.0172 (18)0.0064 (16)
N10.054 (3)0.059 (2)0.044 (3)0.0083 (18)0.023 (2)0.003 (2)
C10.041 (3)0.047 (2)0.046 (3)−0.005 (2)0.020 (2)0.002 (2)
C20.042 (3)0.049 (3)0.045 (3)−0.004 (2)0.018 (2)−0.005 (2)
C30.041 (3)0.050 (2)0.047 (3)−0.009 (2)0.018 (3)0.000 (2)
C40.046 (3)0.054 (3)0.046 (3)−0.006 (2)0.021 (2)0.002 (2)
C50.061 (4)0.067 (3)0.052 (4)−0.007 (3)0.025 (3)−0.001 (3)
C60.078 (4)0.094 (4)0.050 (4)0.005 (3)0.029 (3)0.005 (3)
C70.051 (3)0.051 (3)0.056 (4)−0.012 (2)0.026 (3)−0.004 (3)
C80.046 (3)0.065 (3)0.063 (4)0.009 (2)0.021 (3)−0.002 (3)
C90.075 (4)0.114 (4)0.070 (4)0.016 (3)0.046 (3)0.001 (3)
C100.065 (4)0.078 (3)0.047 (3)0.005 (3)0.021 (3)0.000 (3)
C110.053 (3)0.057 (3)0.058 (4)−0.002 (2)0.016 (3)0.000 (3)
C120.058 (4)0.070 (3)0.068 (4)0.010 (3)0.010 (3)0.010 (3)
C130.054 (3)0.076 (3)0.083 (4)0.016 (3)0.028 (3)0.008 (3)
S1—C11.709 (5)C8—C91.498 (8)
S1—C41.738 (4)C12—C131.510 (7)
O1—C51.219 (6)C6—H6A0.9600
O2—C71.220 (6)C6—H6B0.9600
O3—C71.344 (6)C6—H6C0.9600
O3—C81.458 (6)C8—H8A0.9700
O4—C111.212 (7)C8—H8B0.9700
O5—C111.331 (6)C9—H9A0.9600
O5—C121.452 (6)C9—H9B0.9600
N1—C11.375 (7)C9—H9C0.9600
N1—C51.371 (7)C10—H10A0.9600
N1—H10.8600C10—H10B0.9600
C1—C21.386 (7)C10—H10C0.9600
C2—C31.424 (6)C12—H12A0.9700
C2—C71.458 (7)C12—H12B0.9700
C3—C101.511 (6)C13—H13A0.9600
C3—C41.374 (6)C13—H13B0.9600
C4—C111.464 (7)C13—H13C0.9600
C5—C61.494 (8)
C1—S1—C490.4 (3)H6A—C6—H6B109.00
C7—O3—C8115.5 (4)H6A—C6—H6C109.00
C11—O5—C12116.3 (4)H6B—C6—H6C109.00
C1—N1—C5126.3 (4)O3—C8—H8A110.00
C1—N1—H1117.00O3—C8—H8B110.00
C5—N1—H1117.00C9—C8—H8A110.00
S1—C1—N1122.1 (4)C9—C8—H8B110.00
N1—C1—C2124.3 (4)H8A—C8—H8B109.00
S1—C1—C2113.6 (4)C8—C9—H9A109.00
C1—C2—C7119.3 (4)C8—C9—H9B109.00
C1—C2—C3111.3 (4)C8—C9—H9C109.00
C3—C2—C7129.4 (4)H9A—C9—H9B109.00
C2—C3—C10125.4 (4)H9A—C9—H9C109.00
C2—C3—C4112.2 (4)H9B—C9—H9C109.00
C4—C3—C10122.4 (4)C3—C10—H10A110.00
C3—C4—C11129.7 (4)C3—C10—H10B109.00
S1—C4—C11117.7 (4)C3—C10—H10C110.00
S1—C4—C3112.6 (3)H10A—C10—H10B109.00
O1—C5—N1120.8 (5)H10A—C10—H10C109.00
O1—C5—C6123.7 (5)H10B—C10—H10C109.00
N1—C5—C6115.5 (4)O5—C12—H12A110.00
O2—C7—O3121.4 (4)O5—C12—H12B110.00
O3—C7—C2113.7 (4)C13—C12—H12A110.00
O2—C7—C2124.9 (5)C13—C12—H12B110.00
O3—C8—C9107.3 (4)H12A—C12—H12B108.00
O4—C11—O5122.4 (5)C12—C13—H13A109.00
O4—C11—C4125.6 (5)C12—C13—H13B110.00
O5—C11—C4111.9 (4)C12—C13—H13C110.00
O5—C12—C13107.3 (4)H13A—C13—H13B109.00
C5—C6—H6A110.00H13A—C13—H13C109.00
C5—C6—H6B110.00H13B—C13—H13C109.00
C5—C6—H6C109.00
C4—S1—C1—N1178.4 (4)N1—C1—C2—C71.7 (7)
C4—S1—C1—C2−0.8 (4)C1—C2—C3—C40.6 (6)
C1—S1—C4—C31.1 (4)C1—C2—C3—C10179.3 (4)
C1—S1—C4—C11−177.0 (4)C7—C2—C3—C4179.9 (5)
C8—O3—C7—O22.2 (6)C7—C2—C3—C10−1.4 (8)
C8—O3—C7—C2−177.3 (4)C1—C2—C7—O2−5.3 (7)
C7—O3—C8—C9175.9 (4)C1—C2—C7—O3174.1 (4)
C12—O5—C11—O4−1.7 (7)C3—C2—C7—O2175.3 (5)
C12—O5—C11—C4176.1 (4)C3—C2—C7—O3−5.2 (7)
C11—O5—C12—C13179.5 (4)C2—C3—C4—S1−1.1 (5)
C5—N1—C1—S13.2 (6)C2—C3—C4—C11176.7 (5)
C5—N1—C1—C2−177.7 (4)C10—C3—C4—S1−179.9 (3)
C1—N1—C5—O13.2 (7)C10—C3—C4—C11−2.1 (8)
C1—N1—C5—C6−177.9 (4)S1—C4—C11—O4174.8 (4)
S1—C1—C2—C30.3 (5)S1—C4—C11—O5−2.9 (5)
S1—C1—C2—C7−179.2 (3)C3—C4—C11—O4−2.9 (8)
N1—C1—C2—C3−178.9 (4)C3—C4—C11—O5179.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.861.992.652 (5)133
C10—H10B···O40.962.242.995 (6)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O20.861.992.652 (5)133
C10—H10B⋯O40.962.242.995 (6)135
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 2-benzamido-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Authors:  Asma Mukhtar; M Nawaz Tahir; Misbahul Ain Khan; Muhammad Naeem Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  2 in total

1.  Ethyl 2-acet-amido-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Authors:  Asma Mukhtar; M Nawaz Tahir; Misbahul Ain Khan; Abdul Qayyum Ather; Muhammad Naeem Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

2.  Ethyl 2-(pyridine-4-carboxamido)-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Authors:  Asma Mukhtar; M Nawaz Tahir; Misbahul Ain Khan; Abdul Qayyum Ather; Naveed Sajid
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  2 in total

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