Literature DB >> 22804490

Bioinformatics challenges and solutions in proteomics as quantitative methods mature.

Andrew R Jones.   

Abstract

Mesh：

Year:  2012        PMID： 22804490      PMCID： PMC3698678          DOI： 10.1089/omi.2012.0051

Source DB:  PubMed          Journal:  OMICS        ISSN： 1536-2310


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  7 in total

1.  Find pairs: the module for protein quantification of the PeakQuant software suite.

Authors:  Martin Eisenacher; Michael Kohl; Sebastian Wiese; Romano Hebeler; Helmut E Meyer; Bettina Warscheid; Christian Stephan
Journal:  OMICS       Date:  2012-08-21

2.  The effect of peptide identification search algorithms on MS2-based label-free protein quantification.

Authors:  Sven Degroeve; An Staes; Pieter-Jan De Bock; Lennart Martens
Journal:  OMICS       Date:  2012-07-17

3.  Prediction of missed proteolytic cleavages for the selection of surrogate peptides for quantitative proteomics.

Authors:  Craig Lawless; Simon J Hubbard
Journal:  OMICS       Date:  2012-07-17

4.  MRMaid 2.0: mining PRIDE for evidence-based SRM transitions.

Authors:  Jun Fan; Fady Mohareb; Nicholas J Bond; Kathryn S Lilley; Conrad Bessant
Journal:  OMICS       Date:  2012-07-17

5.  A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis.

Authors:  Faviel F Gonzalez-Galarza; Craig Lawless; Simon J Hubbard; Jun Fan; Conrad Bessant; Henning Hermjakob; Andrew R Jones
Journal:  OMICS       Date:  2012-07-17

6.  A software toolkit and interface for performing stable isotope labeling and top3 quantification using Progenesis LC-MS.

Authors:  Da Qi; Philip Brownridge; Dong Xia; Katherine Mackay; Faviel F Gonzalez-Galarza; Jenna Kenyani; Victoria Harman; Robert J Beynon; Andrew R Jones
Journal:  OMICS       Date:  2012-08-13

7.  A probabilistic framework for peptide and protein quantification from data-dependent and data-independent LC-MS proteomics experiments.

Authors:  Keith Richardson; Richard Denny; Chris Hughes; John Skilling; Jacek Sikora; Michał Dadlez; Angel Manteca; Hye Ryung Jung; Ole Nørregaard Jensen; Virginie Redeker; Ronald Melki; James I Langridge; Johannes P C Vissers
Journal:  OMICS       Date:  2012-08-07
  7 in total

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