Literature DB >> 22801371

The hypersensitive glucocorticoid response specifically regulates period 1 and expression of circadian genes.

Timothy E Reddy1, Jason Gertz, Gregory E Crawford, Michael J Garabedian, Richard M Myers.   

Abstract

Glucocorticoids regulate gene expression by binding and activating the glucocorticoid receptor (GR). While ligand affinity determines the global sensitivity of the response, additional proteins act on the genome to tune sensitivity of some genes. However, the genomic extent and specificity of dose-specific glucocorticoid responses are unknown. We show that dose-specific glucocorticoid responses are extraordinarily specific at the genomic scale, able to distinctly express a single gene, the circadian rhythm gene for Period 1 (PER1), at concentrations consistent with the nighttime nadir of human cortisol. We mapped the PER1 response to a single GR binding site. The specific GR binding sequence did not impact sensitivity, and we instead attributed the response to a combination of additional transcription factors and chromatin accessibility acting in the same locus. The PER1 hypersensitive response element is conserved in the mouse, where we found similar upregulation of Per1 in pituitary cells. Targeted and transient overexpression of PER1 led to regulation of additional circadian rhythm genes hours later, suggesting that hypersensitive expression of PER1 impacts circadian gene expression. These findings show that hypersensitive GR binding occurs throughout the genome, drives targeted gene expression, and may be important to endocrine mediation of peripheral circadian rhythms.

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Year:  2012        PMID: 22801371      PMCID: PMC3430195          DOI: 10.1128/MCB.00062-12

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  73 in total

1.  Opposing effects of corepressor and coactivators in determining the dose-response curve of agonists, and residual agonist activity of antagonists, for glucocorticoid receptor-regulated gene expression.

Authors:  D Szapary; Y Huang; S S Simons
Journal:  Mol Endocrinol       Date:  1999-12

2.  FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Authors:  Mathieu Lupien; Jérôme Eeckhoute; Clifford A Meyer; Qianben Wang; Yong Zhang; Wei Li; Jason S Carroll; X Shirley Liu; Myles Brown
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

3.  Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA.

Authors:  Takashi Sekiya; Uma M Muthurajan; Karolin Luger; Alexei V Tulin; Kenneth S Zaret
Journal:  Genes Dev       Date:  2009-04-01       Impact factor: 11.361

4.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

5.  Mapping and quantifying mammalian transcriptomes by RNA-Seq.

Authors:  Ali Mortazavi; Brian A Williams; Kenneth McCue; Lorian Schaeffer; Barbara Wold
Journal:  Nat Methods       Date:  2008-05-30       Impact factor: 28.547

6.  Modulation of transcription parameters in glucocorticoid receptor-mediated repression.

Authors:  Yunguang Sun; Yong-Guang Tao; Benjamin L Kagan; Yuangzheng He; S Stoney Simons
Journal:  Mol Cell Endocrinol       Date:  2008-05-21       Impact factor: 4.102

7.  Dexamethasone-mediated up-regulation of human CYP2A6 involves the glucocorticoid receptor and increased binding of hepatic nuclear factor 4 alpha to the proximal promoter.

Authors:  Tania Onica; Kathleen Nichols; Meghan Larin; Lorraine Ng; Ann Maslen; Zdenek Dvorak; Jean-Marc Pascussi; Marie-Josée Vilarem; Patrick Maurel; Gordon M Kirby
Journal:  Mol Pharmacol       Date:  2007-10-31       Impact factor: 4.436

8.  Differential recruitment of glucocorticoid receptor phospho-isoforms to glucocorticoid-induced genes.

Authors:  Raymond D Blind; Michael J Garabedian
Journal:  J Steroid Biochem Mol Biol       Date:  2008-01-19       Impact factor: 4.292

9.  Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.

Authors:  Anton Valouev; David S Johnson; Andreas Sundquist; Catherine Medina; Elizabeth Anton; Serafim Batzoglou; Richard M Myers; Arend Sidow
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

10.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971

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  57 in total

Review 1.  Stress and glucocorticoid receptor transcriptional programming in time and space: Implications for the brain-gut axis.

Authors:  J W Wiley; G A Higgins; B D Athey
Journal:  Neurogastroenterol Motil       Date:  2016-01       Impact factor: 3.598

Review 2.  Minireview: Conversing with chromatin: the language of nuclear receptors.

Authors:  Simon C Biddie; Sam John
Journal:  Mol Endocrinol       Date:  2013-01-01

3.  Diurnal Corticosterone Presence and Phase Modulate Clock Gene Expression in the Male Rat Prefrontal Cortex.

Authors:  Elizabeth R Woodruff; Lauren E Chun; Laura R Hinds; Robert L Spencer
Journal:  Endocrinology       Date:  2016-02-22       Impact factor: 4.736

Review 4.  Minireview: new molecular mediators of glucocorticoid receptor activity in metabolic tissues.

Authors:  Rucha Patel; Jasmine Williams-Dautovich; Carolyn L Cummins
Journal:  Mol Endocrinol       Date:  2014-04-25

5.  Investigating circadian clock gene expression in human tendon biopsies from acute exercise and immobilization studies.

Authors:  Ching-Yan Chloé Yeung; Peter Schjerling; Katja M Heinemeier; Anders P Boesen; Kasper Dideriksen; Michael Kjær
Journal:  Eur J Appl Physiol       Date:  2019-03-28       Impact factor: 3.078

Review 6.  Mechanism of the circadian clock in physiology.

Authors:  Jacob Richards; Michelle L Gumz
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2013-04-10       Impact factor: 3.619

Review 7.  Clock genes × stress × reward interactions in alcohol and substance use disorders.

Authors:  Stéphanie Perreau-Lenz; Rainer Spanagel
Journal:  Alcohol       Date:  2015-04-24       Impact factor: 2.405

8.  Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome.

Authors:  Christopher M Vockley; Anthony M D'Ippolito; Ian C McDowell; William H Majoros; Alexias Safi; Lingyun Song; Gregory E Crawford; Timothy E Reddy
Journal:  Cell       Date:  2016-08-25       Impact factor: 41.582

Review 9.  Corticosteroids: Mechanisms of Action in Health and Disease.

Authors:  Sivapriya Ramamoorthy; John A Cidlowski
Journal:  Rheum Dis Clin North Am       Date:  2016-02       Impact factor: 2.670

10.  Brain-derived neurotrophic factor signaling rewrites the glucocorticoid transcriptome via glucocorticoid receptor phosphorylation.

Authors:  W Marcus Lambert; Chong-Feng Xu; Thomas A Neubert; Moses V Chao; Michael J Garabedian; Freddy D Jeanneteau
Journal:  Mol Cell Biol       Date:  2013-07-22       Impact factor: 4.272

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