Literature DB >> 24196351

Minireview: Conversing with chromatin: the language of nuclear receptors.

Simon C Biddie1, Sam John.   

Abstract

Nuclear receptors are transcription factors that are activated by physiological stimuli to bind DNA in the context of chromatin and regulate complex biological pathways. Major advances in nuclear receptor biology have been aided by genome scale examinations of receptor interactions with chromatin. In this review, we summarize the roles of the chromatin landscape in regulating nuclear receptor function. Chromatin acts as a central integrator in the nuclear receptor-signaling axis, operating in distinct temporal modalities. Chromatin effects nuclear receptor action by specifying its genomic localization and interactions with regulatory elements. On receptor binding, changes in chromatin operate as an effector of receptor signaling to modulate transcriptional events. Chromatin is therefore an integral component of the pathways that guide nuclear receptor action in cell-type-specific and cell state-dependent manners.

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Year:  2013        PMID: 24196351      PMCID: PMC3874455          DOI: 10.1210/me.2013-1247

Source DB:  PubMed          Journal:  Mol Endocrinol        ISSN: 0888-8809


  168 in total

1.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

2.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

4.  DNA binding of the glucocorticoid receptor is not essential for survival.

Authors:  H M Reichardt; K H Kaestner; J Tuckermann; O Kretz; O Wessely; R Bock; P Gass; W Schmid; P Herrlich; P Angel; G Schütz
Journal:  Cell       Date:  1998-05-15       Impact factor: 41.582

5.  Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma.

Authors:  Siân Jones; Tian-Li Wang; Ie-Ming Shih; Tsui-Lien Mao; Kentaro Nakayama; Richard Roden; Ruth Glas; Dennis Slamon; Luis A Diaz; Bert Vogelstein; Kenneth W Kinzler; Victor E Velculescu; Nickolas Papadopoulos
Journal:  Science       Date:  2010-09-08       Impact factor: 47.728

6.  A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

Authors:  Na-Yu Chia; Yun-Shen Chan; Bo Feng; Xinyi Lu; Yuriy L Orlov; Dimitri Moreau; Pankaj Kumar; Lin Yang; Jianming Jiang; Mei-Sheng Lau; Mikael Huss; Boon-Seng Soh; Petra Kraus; Pin Li; Thomas Lufkin; Bing Lim; Neil D Clarke; Frederic Bard; Huck-Hui Ng
Journal:  Nature       Date:  2010-10-17       Impact factor: 49.962

7.  Hormone-dependent coactivator binding to a hydrophobic cleft on nuclear receptors.

Authors:  W Feng; R C Ribeiro; R L Wagner; H Nguyen; J W Apriletti; R J Fletterick; J D Baxter; P J Kushner; B L West
Journal:  Science       Date:  1998-06-12       Impact factor: 47.728

8.  Interaction of the glucocorticoid receptor with the chromatin landscape.

Authors:  Sam John; Peter J Sabo; Thomas A Johnson; Myong-Hee Sung; Simon C Biddie; Stafford L Lightman; Ty C Voss; Sean R Davis; Paul S Meltzer; John A Stamatoyannopoulos; Gordon L Hager
Journal:  Mol Cell       Date:  2008-03-14       Impact factor: 17.970

9.  G9a functions as a molecular scaffold for assembly of transcriptional coactivators on a subset of glucocorticoid receptor target genes.

Authors:  Danielle Bittencourt; Dai-Ying Wu; Kwang Won Jeong; Daniel S Gerke; Laurie Herviou; Irina Ianculescu; Rajas Chodankar; Kimberly D Siegmund; Michael R Stallcup
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-14       Impact factor: 11.205

10.  The glucocorticoid receptor binds to defined nucleotide sequences near the promoter of mouse mammary tumour virus.

Authors:  C Scheidereit; S Geisse; H M Westphal; M Beato
Journal:  Nature       Date:  1983 Aug 25-31       Impact factor: 49.962

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Authors:  Emma H Wall; Sylvia C Hewitt; Laure K Case; Chin-Yo Lin; Kenneth S Korach; Cory Teuscher
Journal:  FASEB J       Date:  2014-09-11       Impact factor: 5.191

2.  DNA Sequence Constraints Define Functionally Active Steroid Nuclear Receptor Binding Sites in Chromatin.

Authors:  Laurel A Coons; Sylvia C Hewitt; Adam B Burkholder; Donald P McDonnell; Kenneth S Korach
Journal:  Endocrinology       Date:  2017-10-01       Impact factor: 4.736

3.  Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development.

Authors:  Jean-François Schmouth; David Arenillas; Ximena Corso-Díaz; Yuan-Yun Xie; Slavita Bohacec; Kathleen G Banks; Russell J Bonaguro; Siaw H Wong; Steven J M Jones; Marco A Marra; Elizabeth M Simpson; Wyeth W Wasserman
Journal:  BMC Genomics       Date:  2015-07-24       Impact factor: 3.969

4.  Mapping the Dynamics of the Glucocorticoid Receptor within the Nuclear Landscape.

Authors:  Martin Stortz; Diego M Presman; Luciana Bruno; Paolo Annibale; Maria V Dansey; Gerardo Burton; Enrico Gratton; Adali Pecci; Valeria Levi
Journal:  Sci Rep       Date:  2017-07-24       Impact factor: 4.379

5.  The Transcription Factor IRF6 Co-Represses PPARγ-Mediated Cytoprotection in Ischemic Cerebrovascular Endothelial Cells.

Authors:  Rongzhong Huang; Zicheng Hu; Yuxing Feng; Lehua Yu; Xingsheng Li
Journal:  Sci Rep       Date:  2017-05-19       Impact factor: 4.379

Review 6.  Sex-Dependent Effects of Developmental Lead Exposure on the Brain.

Authors:  Garima Singh; Vikrant Singh; Marissa Sobolewski; Deborah A Cory-Slechta; Jay S Schneider
Journal:  Front Genet       Date:  2018-03-16       Impact factor: 4.599

7.  Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding.

Authors:  Ian C McDowell; Alejandro Barrera; Anthony M D'Ippolito; Christopher M Vockley; Linda K Hong; Sarah M Leichter; Luke C Bartelt; William H Majoros; Lingyun Song; Alexias Safi; D Dewran Koçak; Charles A Gersbach; Alexander J Hartemink; Gregory E Crawford; Barbara E Engelhardt; Timothy E Reddy
Journal:  Genome Res       Date:  2018-08-10       Impact factor: 9.043

Review 8.  Control of Breast Cancer Pathogenesis by Histone Methylation and the Hairless Histone Demethylase.

Authors:  Megan H Trager; Bindeshwar Sah; Zhongming Chen; Liang Liu
Journal:  Endocrinology       Date:  2021-08-01       Impact factor: 4.736

  8 in total

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