Literature DB >> 22798905

(2E)-N'-[(E)-2-Hy-droxy-benzyl-idene]-3-phenyl-prop-2-enohydrazide.

Samir A Carvalho, Edson F da Silva, Carlos A M Fraga, Solange M S V Wardell, James L Wardell, Edward R T Tiekink.   

Abstract

In the non-planar title compound, C(16)H(14)N(2)O(2), the dihedral angle between the phenyl rings is 16.67 (8)°. An E conformation is found for each of the imine [1.286 (2) Å] and ethyl-ene [1.335 (2) Å] bonds. The amide O and H atoms are anti, and an intra-molecular hy-droxy O-H⋯N hydrogen bond is noted. The formation of N-H⋯O(hy-droxy) hydrogen bonds in the crystal packing leads to helical chains along the b axis. Supra-molecular layers in the ab plane are formed as the chains are linked by C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22798905      PMCID: PMC3394040          DOI: 10.1107/S1600536812028516

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of compounds with the N-acyl­hydrazone framework, (E)-cinnamoylhydrazone derivatives, and related structures, see: Carvalho et al. (2012a ▶). For the synthesis, see: Carvalho et al. (2012b ▶). For background to the data collection at the National Crystallographic Service, see: Coles & Gale (2012 ▶).

Experimental

Crystal data

C16H14N2O2 M = 266.29 Orthorhombic, a = 24.2707 (17) Å b = 5.1322 (2) Å c = 10.5192 (4) Å V = 1310.29 (12) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.19 × 0.09 × 0.03 mm

Data collection

Rigaku Saturn724+ diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2011 ▶) T min = 0.878, T max = 1.000 5871 measured reflections 1575 independent reflections 1504 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.075 S = 0.93 1575 reflections 181 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrystalClear (Rigaku, 2011 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028516/hb6860sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028516/hb6860Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028516/hb6860Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N2O2F(000) = 560
Mr = 266.29Dx = 1.350 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 5659 reflections
a = 24.2707 (17) Åθ = 3.4–27.5°
b = 5.1322 (2) ŵ = 0.09 mm1
c = 10.5192 (4) ÅT = 100 K
V = 1310.29 (12) Å3Plate, colourless
Z = 40.19 × 0.09 × 0.03 mm
Rigaku Saturn724+ diffractometer1575 independent reflections
Radiation source: Rotating Anode1504 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.022
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 3.4°
profile data from ω–scansh = −30→31
Absorption correction: multi-scan (CrystalClear; Rigaku, 2011)k = −6→6
Tmin = 0.878, Tmax = 1.000l = −13→13
5871 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.075w = 1/[σ2(Fo2) + (0.0497P)2 + 0.3579P] where P = (Fo2 + 2Fc2)/3
S = 0.93(Δ/σ)max = 0.001
1575 reflectionsΔρmax = 0.20 e Å3
181 parametersΔρmin = −0.15 e Å3
1 restraintAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.69975 (5)0.5777 (2)−0.10431 (12)0.0192 (3)
H1O0.7247 (7)0.671 (4)−0.071 (2)0.029*
O20.81273 (5)1.1490 (3)−0.06463 (13)0.0232 (3)
N10.75962 (6)0.7782 (3)0.07685 (14)0.0150 (3)
N20.79692 (6)0.9517 (3)0.12637 (14)0.0158 (3)
H2N0.7997 (9)0.959 (4)0.2096 (10)0.019*
C10.67996 (7)0.4128 (3)−0.01381 (17)0.0157 (3)
C20.69722 (7)0.4288 (3)0.11420 (17)0.0140 (3)
C30.67560 (7)0.2498 (3)0.20137 (17)0.0171 (4)
H30.68690.25770.28770.021*
C40.63806 (7)0.0613 (3)0.16428 (19)0.0187 (4)
H40.6241−0.06020.22440.022*
C50.62097 (7)0.0517 (3)0.03833 (19)0.0201 (4)
H50.5947−0.07530.01280.024*
C60.64170 (7)0.2249 (3)−0.05053 (18)0.0197 (4)
H60.62980.2157−0.13650.024*
C70.73698 (7)0.6215 (3)0.15666 (17)0.0150 (3)
H70.74630.63190.24420.018*
C80.82227 (7)1.1293 (3)0.04921 (17)0.0156 (3)
C90.86435 (7)1.2853 (3)0.11785 (17)0.0161 (3)
H90.87111.25420.20550.019*
C100.89272 (7)1.4693 (3)0.05648 (17)0.0170 (3)
H100.88151.5065−0.02810.020*
C110.93932 (7)1.6197 (3)0.10555 (17)0.0159 (3)
C120.96062 (7)1.8241 (3)0.03252 (19)0.0203 (4)
H120.94421.8652−0.04690.024*
C131.00558 (8)1.9677 (4)0.0748 (2)0.0226 (4)
H131.01962.10610.02420.027*
C141.03004 (7)1.9097 (4)0.19034 (19)0.0225 (4)
H141.06062.00870.21930.027*
C151.00967 (7)1.7064 (4)0.26359 (18)0.0210 (4)
H151.02661.66580.34260.025*
C160.96482 (7)1.5624 (3)0.22228 (18)0.0177 (3)
H160.95121.42380.27320.021*
U11U22U33U12U13U23
O10.0245 (6)0.0213 (6)0.0118 (6)−0.0067 (5)−0.0012 (5)−0.0003 (5)
O20.0293 (7)0.0274 (7)0.0130 (6)−0.0075 (5)−0.0028 (6)−0.0001 (6)
N10.0147 (6)0.0154 (6)0.0149 (6)−0.0003 (5)−0.0009 (5)−0.0031 (6)
N20.0175 (7)0.0183 (7)0.0115 (7)−0.0035 (5)−0.0015 (6)−0.0028 (6)
C10.0148 (7)0.0167 (7)0.0154 (8)0.0021 (6)0.0008 (6)−0.0019 (7)
C20.0136 (7)0.0144 (7)0.0141 (8)0.0011 (6)0.0011 (6)−0.0023 (7)
C30.0170 (8)0.0190 (8)0.0154 (9)0.0017 (6)0.0011 (7)−0.0009 (7)
C40.0189 (8)0.0156 (8)0.0215 (9)−0.0003 (6)0.0054 (7)0.0021 (7)
C50.0175 (8)0.0179 (8)0.0248 (9)−0.0029 (6)0.0001 (7)−0.0049 (7)
C60.0189 (8)0.0225 (8)0.0177 (8)−0.0014 (7)−0.0032 (7)−0.0041 (8)
C70.0150 (7)0.0182 (8)0.0118 (7)0.0005 (6)−0.0007 (6)−0.0029 (7)
C80.0159 (7)0.0166 (8)0.0143 (8)0.0010 (6)0.0009 (6)−0.0013 (7)
C90.0167 (7)0.0174 (8)0.0141 (7)0.0008 (6)−0.0010 (6)−0.0024 (7)
C100.0175 (8)0.0176 (8)0.0158 (8)0.0015 (6)−0.0009 (7)−0.0018 (7)
C110.0148 (7)0.0148 (7)0.0180 (8)0.0017 (6)0.0028 (7)−0.0019 (7)
C120.0212 (8)0.0180 (8)0.0217 (9)0.0004 (6)0.0004 (7)0.0039 (7)
C130.0207 (9)0.0160 (8)0.0312 (10)−0.0016 (6)0.0038 (8)0.0015 (8)
C140.0175 (8)0.0189 (8)0.0311 (11)−0.0004 (7)0.0009 (7)−0.0060 (8)
C150.0178 (8)0.0230 (9)0.0223 (9)0.0025 (7)−0.0015 (7)−0.0046 (8)
C160.0173 (7)0.0174 (8)0.0182 (8)0.0010 (6)0.0030 (7)−0.0001 (7)
O1—C11.361 (2)C7—H70.9500
O1—H1O0.848 (10)C8—C91.485 (2)
O2—C81.224 (2)C9—C101.335 (2)
N1—C71.286 (2)C9—H90.9500
N1—N21.3727 (19)C10—C111.463 (2)
N2—C81.367 (2)C10—H100.9500
N2—H2N0.879 (10)C11—C121.399 (2)
C1—C61.393 (2)C11—C161.406 (2)
C1—C21.413 (3)C12—C131.390 (3)
C2—C31.400 (2)C12—H120.9500
C2—C71.452 (2)C13—C141.385 (3)
C3—C41.385 (2)C13—H130.9500
C3—H30.9500C14—C151.388 (3)
C4—C51.389 (3)C14—H140.9500
C4—H40.9500C15—C161.386 (2)
C5—C61.385 (3)C15—H150.9500
C5—H50.9500C16—H160.9500
C6—H60.9500
C1—O1—H1O108.1 (18)O2—C8—C9124.15 (16)
C7—N1—N2116.09 (15)N2—C8—C9112.36 (15)
C8—N2—N1120.28 (15)C10—C9—C8120.06 (16)
C8—N2—H2N122.0 (15)C10—C9—H9120.0
N1—N2—H2N117.1 (15)C8—C9—H9120.0
O1—C1—C6118.13 (17)C9—C10—C11126.95 (16)
O1—C1—C2121.73 (15)C9—C10—H10116.5
C6—C1—C2120.14 (17)C11—C10—H10116.5
C3—C2—C1118.36 (15)C12—C11—C16118.26 (16)
C3—C2—C7119.64 (16)C12—C11—C10119.17 (16)
C1—C2—C7121.99 (16)C16—C11—C10122.55 (16)
C4—C3—C2121.36 (17)C13—C12—C11120.80 (18)
C4—C3—H3119.3C13—C12—H12119.6
C2—C3—H3119.3C11—C12—H12119.6
C3—C4—C5119.33 (17)C14—C13—C12120.23 (18)
C3—C4—H4120.3C14—C13—H13119.9
C5—C4—H4120.3C12—C13—H13119.9
C6—C5—C4120.84 (17)C13—C14—C15119.73 (17)
C6—C5—H5119.6C13—C14—H14120.1
C4—C5—H5119.6C15—C14—H14120.1
C5—C6—C1119.96 (17)C16—C15—C14120.44 (17)
C5—C6—H6120.0C16—C15—H15119.8
C1—C6—H6120.0C14—C15—H15119.8
N1—C7—C2120.60 (16)C15—C16—C11120.54 (17)
N1—C7—H7119.7C15—C16—H16119.7
C2—C7—H7119.7C11—C16—H16119.7
O2—C8—N2123.43 (16)
C7—N1—N2—C8−178.71 (15)N1—N2—C8—O21.8 (3)
O1—C1—C2—C3−179.07 (15)N1—N2—C8—C9−175.41 (14)
C6—C1—C2—C31.0 (2)O2—C8—C9—C103.3 (3)
O1—C1—C2—C70.0 (2)N2—C8—C9—C10−179.52 (15)
C6—C1—C2—C7−179.97 (16)C8—C9—C10—C11−172.84 (16)
C1—C2—C3—C4−0.2 (2)C9—C10—C11—C12−173.45 (17)
C7—C2—C3—C4−179.29 (15)C9—C10—C11—C168.4 (3)
C2—C3—C4—C5−0.8 (3)C16—C11—C12—C13−0.4 (3)
C3—C4—C5—C61.1 (3)C10—C11—C12—C13−178.64 (16)
C4—C5—C6—C1−0.4 (3)C11—C12—C13—C140.1 (3)
O1—C1—C6—C5179.34 (15)C12—C13—C14—C150.4 (3)
C2—C1—C6—C5−0.7 (3)C13—C14—C15—C16−0.4 (3)
N2—N1—C7—C2−179.55 (14)C14—C15—C16—C110.1 (3)
C3—C2—C7—N1176.11 (15)C12—C11—C16—C150.3 (2)
C1—C2—C7—N1−2.9 (2)C10—C11—C16—C15178.50 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N10.85 (2)1.86 (2)2.6080 (19)147 (2)
N2—H2n···O1i0.88 (1)2.05 (1)2.9070 (19)165 (2)
C3—H3···O2ii0.952.543.215 (2)128
C7—H7···O2ii0.952.473.174 (2)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1o⋯N10.85 (2)1.86 (2)2.6080 (19)147 (2)
N2—H2n⋯O1i 0.88 (1)2.05 (1)2.9070 (19)165 (2)
C3—H3⋯O2ii 0.952.543.215 (2)128
C7—H7⋯O2ii 0.952.473.174 (2)131

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2E)-N'-[(E)-Benzyl-idene]-3-phenyl-prop-2-enohydrazide from synchrotron radiation.

Authors:  Samir A Carvalho; Edson F da Silva; Carlos A M Fraga; Solange M S V Wardell; James L Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  2 in total
  2 in total

1.  (2E)-N'-[(E)-Benzyl-idene]-3-phenyl-prop-2-enohydrazide from synchrotron radiation.

Authors:  Samir A Carvalho; Edson F da Silva; Carlos A M Fraga; Solange M S V Wardell; James L Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

2.  Antiprotozoal activity of (E)-cinnamic N-acylhydrazone derivatives.

Authors:  Samir Aquino Carvalho; Marcel Kaiser; Reto Brun; Edson Ferreira da Silva; Carlos Alberto Manssour Fraga
Journal:  Molecules       Date:  2014-12-05       Impact factor: 4.411

  2 in total

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