Literature DB >> 22798884

(1R,3R,3aS,8aR)-4-Oxo-3-phenyl-1-[(1R)-1-phenyl-eth-yl]deca-hydro-cyclo-hepta-[b]pyrrol-1-ium bromide.

Victor B Rybakov1, Dmitry S Belov, Evgeny R Lukyanenko, Alexander V Kurkin, Marina A Yurovskaya.   

Abstract

The title chiral compound, C(23)H(28)NO(+)·Br(-), was obtained from an optically active amino-ethanol precursor. The pyrrolidine heterocycle has an envelope conformation, with the C atom α-positioned with respect to the keto group deviating by 0.570 (6) Å from the mean plane of other atoms. The trans-fused seven-membered ring adopts a pseudo-chair conformation. The two phenyl rings form a dihedral angle of 85.1 (2)°. The cationic center and the bromide anion are connected through an N-H⋯Br hydrogen bond.

Entities:  

Year:  2012        PMID: 22798884      PMCID: PMC3394019          DOI: 10.1107/S1600536812028073

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the aza-Cope–Mannich sequence, see: Overman (1992 ▶, 2009 ▶). For natural products with cyclo­hepta­[b]pyrrolidine, see: Earley et al. (2005 ▶); Martin et al. (2008 ▶). For biologically active compounds, see: Tamiz et al. (2000 ▶). For the preparation of cis-cyclo­hepta­[b]pyrrolidines, see: Belov et al. (2011 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C23H28NOBr M = 414.36 Monoclinic, a = 6.7996 (4) Å b = 13.3136 (8) Å c = 11.3167 (8) Å β = 94.449 (5)° V = 1021.38 (11) Å3 Z = 2 Mo Kα radiation μ = 2.02 mm−1 T = 295 K 0.25 × 0.25 × 0.13 mm

Data collection

Stoe STADI-VARI Pilatus-100K diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2012 ▶) T min = 0.229, T max = 0.482 8956 measured reflections 2995 independent reflections 2116 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.104 S = 0.97 2995 reflections 230 parameters 1 restraint H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), 897 Friedel pairs Flack parameter: −0.018 (14) Data collection: X-AREA (Stoe & Cie, 2012 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2012 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global. DOI: 10.1107/S1600536812028073/ld2065sup1.cif Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H28NO+·BrF(000) = 432
Mr = 414.36Dx = 1.347 Mg m3
Monoclinic, P21Melting point = 498.1–498.5 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 6.7996 (4) ÅCell parameters from 6482 reflections
b = 13.3136 (8) Åθ = 1.8–29.2°
c = 11.3167 (8) ŵ = 2.02 mm1
β = 94.449 (5)°T = 295 K
V = 1021.38 (11) Å3Prism, colourless
Z = 20.25 × 0.25 × 0.13 mm
Stoe STADI-VARI Pilatus-100K diffractometer2995 independent reflections
Radiation source: LFF Sealed Tube2116 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.071
Detector resolution: 5.81 pixels mm-1θmax = 26.0°, θmin = 1.8°
Rotation method scansh = −8→8
Absorption correction: integration (X-AREA; Stoe & Cie, 2012)k = −16→11
Tmin = 0.229, Tmax = 0.482l = −13→9
8956 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.0568P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max < 0.001
2995 reflectionsΔρmax = 0.41 e Å3
230 parametersΔρmin = −0.29 e Å3
1 restraintAbsolute structure: Flack (1983), 897 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.018 (14)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S/i> are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.23660 (6)0.27140 (5)−0.02750 (6)0.0688 (2)
N10.1339 (5)0.1146 (3)−0.0108 (3)0.0368 (8)
H10.01420.1407−0.03580.044*
C20.2616 (6)0.2019 (4)0.0343 (4)0.0395 (10)
H2A0.18550.26360.03200.047*
H2B0.37230.2105−0.01390.047*
C30.3348 (4)0.1755 (3)0.1631 (2)0.0388 (10)
H30.45560.13530.16300.047*
C310.3719 (4)0.2642 (3)0.2411 (2)0.0458 (9)
C320.5629 (4)0.2789 (3)0.2920 (2)0.0660 (14)
H320.66330.23540.27380.079*
C330.6034 (13)0.3576 (6)0.3693 (6)0.086 (2)
H330.73210.36680.40160.104*
C340.4647 (15)0.4206 (7)0.3991 (6)0.091 (3)
H340.49530.47240.45250.110*
C350.2722 (14)0.4082 (5)0.3494 (6)0.083 (2)
H350.17310.45180.36920.100*
C360.2295 (9)0.3297 (4)0.2695 (5)0.0582 (14)
H360.10160.32210.23530.070*
C40.1632 (7)0.1082 (4)0.2013 (4)0.0406 (10)
H40.05280.15100.22080.049*
C50.2251 (8)0.0412 (4)0.3074 (5)0.0548 (13)
O50.3950 (7)0.0369 (5)0.3429 (4)0.0983 (18)
C60.0720 (9)−0.0179 (6)0.3648 (5)0.0705 (16)
H6A0.06660.00730.44500.085*
H6B0.1173−0.08690.37110.085*
C7−0.1365 (8)−0.0190 (5)0.3073 (5)0.0598 (14)
H7A−0.18530.04940.30330.072*
H7B−0.2188−0.05660.35790.072*
C8−0.1601 (10)−0.0640 (5)0.1835 (6)0.0589 (16)
H8A−0.2954−0.08660.16820.071*
H8B−0.0757−0.12260.18150.071*
C9−0.1110 (7)0.0073 (4)0.0835 (5)0.0496 (12)
H9A−0.1374−0.02700.00830.059*
H9B−0.19830.06490.08360.059*
C100.1002 (6)0.0443 (4)0.0921 (4)0.0402 (11)
H100.1891−0.01350.08930.048*
C110.2090 (7)0.0586 (4)−0.1164 (4)0.0424 (11)
H110.1282−0.0021−0.12740.051*
C120.4193 (7)0.0238 (5)−0.0901 (5)0.0547 (13)
H12A0.50380.0811−0.07640.082*
H12B0.4603−0.0136−0.15650.082*
H12C0.4276−0.0181−0.02100.082*
C130.1697 (9)0.1210 (4)−0.2284 (5)0.0470 (13)
C140.3192 (9)0.1652 (5)−0.2867 (6)0.0695 (17)
H140.44910.1614−0.25470.083*
C150.2742 (13)0.2154 (6)−0.3935 (7)0.089 (2)
H150.37480.2438−0.43360.107*
C160.0841 (14)0.2229 (6)−0.4391 (6)0.085 (2)
H160.05580.2555−0.51110.102*
C17−0.0640 (12)0.1837 (6)−0.3811 (6)0.083 (2)
H17−0.19390.1909−0.41230.100*
C18−0.0238 (9)0.1330 (5)−0.2762 (5)0.0640 (15)
H18−0.12690.1063−0.23680.077*
U11U22U33U12U13U23
Br10.0468 (2)0.0492 (3)0.1123 (5)0.0021 (4)0.0192 (2)0.0044 (5)
N10.0392 (18)0.039 (2)0.032 (2)−0.0024 (16)0.0008 (15)0.0033 (17)
C20.044 (2)0.037 (2)0.038 (3)−0.0071 (19)0.0080 (18)−0.002 (2)
C30.040 (2)0.043 (3)0.033 (3)−0.0001 (19)0.0018 (18)−0.002 (2)
C310.058 (2)0.046 (2)0.033 (2)0.001 (4)0.0015 (17)0.008 (3)
C320.073 (3)0.069 (4)0.053 (3)−0.016 (4)−0.014 (2)−0.006 (4)
C330.112 (6)0.082 (5)0.060 (4)−0.023 (5)−0.027 (4)0.003 (4)
C340.157 (9)0.076 (5)0.040 (4)−0.049 (6)0.001 (4)−0.010 (4)
C350.142 (7)0.052 (4)0.059 (4)−0.005 (4)0.037 (4)−0.009 (3)
C360.074 (3)0.055 (3)0.048 (3)−0.006 (3)0.014 (3)−0.001 (3)
C40.046 (2)0.042 (3)0.034 (3)0.005 (2)0.0054 (19)0.005 (2)
C50.063 (3)0.057 (3)0.044 (3)0.006 (3)0.007 (2)0.007 (3)
O50.067 (3)0.144 (5)0.081 (3)0.003 (3)−0.015 (2)0.061 (3)
C60.083 (4)0.074 (4)0.054 (3)−0.007 (4)0.005 (3)0.025 (4)
C70.062 (3)0.058 (3)0.063 (3)0.001 (3)0.025 (3)0.014 (3)
C80.057 (3)0.057 (4)0.064 (4)−0.013 (3)0.015 (3)0.013 (3)
C90.050 (2)0.052 (3)0.047 (3)−0.015 (2)0.001 (2)0.008 (2)
C100.041 (2)0.043 (3)0.036 (3)0.000 (2)0.0045 (19)0.006 (2)
C110.051 (3)0.041 (3)0.037 (3)−0.006 (2)0.010 (2)−0.008 (2)
C120.056 (3)0.053 (3)0.056 (3)0.010 (2)0.012 (2)0.001 (3)
C130.062 (3)0.042 (3)0.038 (3)−0.004 (2)0.008 (2)0.000 (3)
C140.069 (4)0.074 (4)0.067 (4)0.010 (3)0.021 (3)0.017 (4)
C150.120 (6)0.084 (5)0.069 (5)0.011 (4)0.046 (4)0.029 (4)
C160.135 (7)0.080 (5)0.040 (4)0.023 (5)0.008 (4)0.006 (3)
C170.109 (5)0.095 (5)0.044 (4)0.004 (5)−0.011 (4)0.006 (4)
C180.071 (4)0.076 (4)0.044 (3)−0.009 (3)−0.004 (3)0.003 (3)
N1—C21.515 (6)C6—H6B0.9700
N1—C101.525 (6)C7—C81.521 (9)
N1—C111.530 (6)C7—H7A0.9700
N1—H10.9100C7—H7B0.9700
C2—C31.543 (5)C8—C91.534 (8)
C2—H2A0.9700C8—H8A0.9700
C2—H2B0.9700C8—H8B0.9700
C3—C311.484 (5)C9—C101.514 (6)
C3—C41.559 (5)C9—H9A0.9700
C3—H30.9800C9—H9B0.9700
C31—C361.360 (6)C10—H100.9800
C31—C321.393 (4)C11—C121.511 (7)
C32—C331.380 (9)C11—C131.522 (8)
C32—H320.9300C11—H110.9800
C33—C341.325 (12)C12—H12A0.9600
C33—H330.9300C12—H12B0.9600
C34—C351.394 (11)C12—H12C0.9600
C34—H340.9300C13—C141.385 (8)
C35—C361.397 (9)C13—C181.392 (8)
C35—H350.9300C14—C151.393 (9)
C36—H360.9300C14—H140.9300
C4—C51.528 (7)C15—C161.358 (11)
C4—C101.535 (7)C15—H150.9300
C4—H40.9800C16—C171.350 (11)
C5—O51.195 (7)C16—H160.9300
C5—C61.493 (8)C17—C181.375 (9)
C6—C71.514 (8)C17—H170.9300
C6—H6A0.9700C18—H180.9300
C2—N1—C10109.3 (3)C8—C7—H7A108.4
C2—N1—C11114.8 (3)C6—C7—H7B108.4
C10—N1—C11112.1 (4)C8—C7—H7B108.4
C2—N1—H1106.7H7A—C7—H7B107.5
C10—N1—H1106.7C7—C8—C9115.0 (5)
C11—N1—H1106.7C7—C8—H8A108.5
N1—C2—C3106.2 (3)C9—C8—H8A108.5
N1—C2—H2A110.5C7—C8—H8B108.5
C3—C2—H2A110.5C9—C8—H8B108.5
N1—C2—H2B110.5H8A—C8—H8B107.5
C3—C2—H2B110.5C10—C9—C8114.4 (5)
H2A—C2—H2B108.7C10—C9—H9A108.7
C31—C3—C2114.1 (2)C8—C9—H9A108.7
C31—C3—C4112.8 (2)C10—C9—H9B108.7
C2—C3—C4101.5 (3)C8—C9—H9B108.7
C31—C3—H3109.4H9A—C9—H9B107.6
C2—C3—H3109.4C9—C10—N1110.4 (4)
C4—C3—H3109.4C9—C10—C4115.9 (4)
C36—C31—C32118.0 (3)N1—C10—C4103.0 (4)
C36—C31—C3124.1 (3)C9—C10—H10109.1
C32—C31—C3117.9 (3)N1—C10—H10109.1
C33—C32—C31120.2 (4)C4—C10—H10109.1
C33—C32—H32119.9C12—C11—C13115.7 (4)
C31—C32—H32119.9C12—C11—N1111.3 (4)
C34—C33—C32122.1 (7)C13—C11—N1109.7 (4)
C34—C33—H33119.0C12—C11—H11106.5
C32—C33—H33119.0C13—C11—H11106.5
C33—C34—C35119.1 (7)N1—C11—H11106.5
C33—C34—H34120.4C11—C12—H12A109.5
C35—C34—H34120.4C11—C12—H12B109.5
C34—C35—C36119.4 (7)H12A—C12—H12B109.5
C34—C35—H35120.3C11—C12—H12C109.5
C36—C35—H35120.3H12A—C12—H12C109.5
C31—C36—C35121.1 (6)H12B—C12—H12C109.5
C31—C36—H36119.4C14—C13—C18118.2 (5)
C35—C36—H36119.4C14—C13—C11122.7 (5)
C5—C4—C10110.6 (4)C18—C13—C11119.0 (5)
C5—C4—C3112.8 (4)C13—C14—C15119.8 (6)
C10—C4—C3105.3 (3)C13—C14—H14120.1
C5—C4—H4109.4C15—C14—H14120.1
C10—C4—H4109.4C16—C15—C14120.2 (6)
C3—C4—H4109.4C16—C15—H15119.9
O5—C5—C6121.2 (5)C14—C15—H15119.9
O5—C5—C4119.5 (5)C17—C16—C15120.7 (7)
C6—C5—C4119.4 (5)C17—C16—H16119.6
C5—C6—C7118.7 (5)C15—C16—H16119.6
C5—C6—H6A107.7C16—C17—C18120.3 (7)
C7—C6—H6A107.7C16—C17—H17119.9
C5—C6—H6B107.7C18—C17—H17119.9
C7—C6—H6B107.7C17—C18—C13120.7 (6)
H6A—C6—H6B107.1C17—C18—H18119.7
C6—C7—C8115.4 (5)C13—C18—H18119.7
C6—C7—H7A108.4
C10—N1—C2—C39.1 (4)C7—C8—C9—C1061.4 (7)
C11—N1—C2—C3−117.9 (4)C8—C9—C10—N1−179.8 (5)
N1—C2—C3—C31−150.5 (2)C8—C9—C10—C4−63.3 (6)
N1—C2—C3—C4−28.9 (4)C2—N1—C10—C9139.4 (4)
C2—C3—C31—C3663.8 (4)C11—N1—C10—C9−92.1 (5)
C4—C3—C31—C36−51.3 (4)C2—N1—C10—C415.1 (4)
C2—C3—C31—C32−118.9 (2)C11—N1—C10—C4143.5 (4)
C4—C3—C31—C32125.9 (2)C5—C4—C10—C983.8 (5)
C36—C31—C32—C330.3 (4)C3—C4—C10—C9−154.1 (4)
C3—C31—C32—C33−177.1 (4)C5—C4—C10—N1−155.5 (4)
C31—C32—C33—C340.9 (9)C3—C4—C10—N1−33.5 (4)
C32—C33—C34—C35−1.1 (11)C2—N1—C11—C1254.3 (5)
C33—C34—C35—C360.1 (10)C10—N1—C11—C12−71.1 (5)
C32—C31—C36—C35−1.3 (6)C2—N1—C11—C13−75.0 (5)
C3—C31—C36—C35176.0 (4)C10—N1—C11—C13159.5 (4)
C34—C35—C36—C311.1 (9)C12—C11—C13—C14−15.9 (8)
C31—C3—C4—C5−78.0 (4)N1—C11—C13—C14111.1 (6)
C2—C3—C4—C5159.5 (4)C12—C11—C13—C18162.8 (5)
C31—C3—C4—C10161.3 (2)N1—C11—C13—C18−70.3 (6)
C2—C3—C4—C1038.8 (4)C18—C13—C14—C15−3.3 (10)
C10—C4—C5—O5109.6 (6)C11—C13—C14—C15175.4 (6)
C3—C4—C5—O5−8.0 (8)C13—C14—C15—C161.4 (11)
C10—C4—C5—C6−70.3 (6)C14—C15—C16—C171.2 (12)
C3—C4—C5—C6172.1 (5)C15—C16—C17—C18−1.8 (12)
O5—C5—C6—C7−172.8 (7)C16—C17—C18—C13−0.2 (11)
C4—C5—C6—C77.1 (9)C14—C13—C18—C172.7 (10)
C5—C6—C7—C862.0 (8)C11—C13—C18—C17−176.0 (6)
C6—C7—C8—C9−81.5 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1···Br10.912.443.266 (4)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯Br10.912.443.266 (4)151
  5 in total

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  5 in total

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