| Literature DB >> 22798882 |
Daniele Muroni, Emilio Napolitano, Olivier Perez, Nicola Culeddu, Antonio Saba.
Abstract
The structure determination confirms the stereochemistry of the title compound, C(21)H(35)NO(3), obtained as an inter-mediate in the enanti-oselective synthesis of de-oxy-nojirimicine analogs. The system contains a pyrrolo-[1,2-a]azocine backbone, which was synthesized by a domino process involving a [2,3]-sigmatropic rearrangement. The incorporation of a chiral auxiliary (-)-menthyl, whose stereocentres are not involved during the synthesis, enables the assignation of absolute configuration. The crystal structure features O-H⋯O hydrogen bonds involving the hy-droxy groups as donors and the carbonyl groups as acceptors, which link the mol-ecules into chains running along [010].Entities:
Year: 2012 PMID: 22798882 PMCID: PMC3394017 DOI: 10.1107/S1600536812027900
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H35NO3 | |
| Melting point: 389 K | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 192 reflections |
| θ = 3.8–17.2° | |
| µ = 0.08 mm−1 | |
| Prism, colourless | |
| 0.36 × 0.13 × 0.13 mm | |
| Bruker APEXII CCD diffractometer | 3281 independent reflections |
| Radiation source: sealed X-ray tube | 2331 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 30.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 21709 measured reflections |
| Refinement on | H atoms treated by a mixture of independent and constrained refinement |
| Weighting scheme based on measured s.u.'s | |
| (Δ/σ)max = 0.016 | |
| Δρmax = 0.23 e Å−3 | |
| 3281 reflections | Δρmin = −0.28 e Å−3 |
| 230 parameters | Extinction correction: B-C type 1 Gaussian isotropic |
| 0 restraints | Extinction coefficient: 16900 (1800) |
| 0 constraints |
| N1 | 0.67923 (4) | 0.06933 (14) | 0.867458 (19) | 0.0178 (4) | |
| C4 | 0.67762 (4) | −0.11800 (4) | 0.865956 (9) | 0.0220 (5) | |
| C5 | 0.80174 (3) | −0.19770 (3) | 0.849823 (11) | 0.0257 (6) | |
| C6 | 0.83930 (2) | −0.17312 (6) | 0.788428 (13) | 0.0300 (6) | |
| C7 | 0.87823 (6) | 0.0057 (2) | 0.77279 (3) | 0.0269 (6) | |
| C8 | 0.80364 (17) | 0.13680 (12) | 0.76224 (5) | 0.0248 (6) | |
| C9 | 0.66451 (6) | 0.12758 (8) | 0.76547 (3) | 0.0217 (5) | |
| C10 | 0.61339 (12) | 0.16447 (13) | 0.82487 (7) | 0.0164 (5) | |
| C1 | 0.63656 (4) | 0.35106 (14) | 0.84420 (7) | 0.0191 (5) | |
| O1 | 0.54447 (13) | 0.46881 (18) | 0.82643 (6) | 0.0257 (4) | |
| C2 | 0.63894 (2) | 0.34119 (7) | 0.90814 (3) | 0.0217 (5) | |
| C3 | 0.67015 (2) | 0.15400 (4) | 0.92186 (3) | 0.0210 (5) | |
| C11 | 0.47217 (16) | 0.1302 (2) | 0.82373 (7) | 0.0164 (5) | |
| O2 | 0.41170 (12) | 0.10136 (18) | 0.78189 (5) | 0.0266 (4) | |
| O3 | 0.42289 (10) | 0.13359 (17) | 0.87513 (5) | 0.0182 (4) | |
| C12 | 0.28911 (11) | 0.1047 (2) | 0.88055 (3) | 0.0181 (5) | |
| C17 | 0.22301 (3) | 0.27715 (11) | 0.880303 (16) | 0.0229 (6) | |
| C16 | 0.08230 (4) | 0.24991 (5) | 0.88606 (2) | 0.0268 (6) | |
| C21 | 0.01309 (2) | 0.42102 (2) | 0.886679 (15) | 0.0438 (8) | |
| C15 | 0.05454 (3) | 0.14406 (3) | 0.93799 (2) | 0.0280 (6) | |
| C14 | 0.12697 (3) | −0.02306 (5) | 0.940244 (13) | 0.0253 (6) | |
| C13 | 0.26755 (15) | 0.00578 (9) | 0.93465 (2) | 0.0188 (5) | |
| C18 | 0.34514 (5) | −0.16029 (4) | 0.93837 (3) | 0.0251 (6) | |
| C20 | 0.32327 (3) | −0.25601 (4) | 0.993247 (7) | 0.0414 (8) | |
| C19 | 0.32833 (4) | −0.27844 (2) | 0.888694 (8) | 0.0426 (8) | |
| H4a | 0.614688 | −0.156111 | 0.840384 | 0.0264* | |
| H4b | 0.6521 | −0.161351 | 0.901768 | 0.0264* | |
| H5a | 0.800812 | −0.317901 | 0.858591 | 0.0309* | |
| H5b | 0.865733 | −0.153207 | 0.873703 | 0.0309* | |
| H6b | 0.904465 | −0.252127 | 0.779173 | 0.036* | |
| H6a | 0.772558 | −0.209188 | 0.764565 | 0.036* | |
| H7a | 0.965749 | 0.027044 | 0.77019 | 0.0323* | |
| H8a | 0.840656 | 0.244258 | 0.75191 | 0.0298* | |
| H9a | 0.637241 | 0.016292 | 0.753417 | 0.0261* | |
| H9b | 0.629027 | 0.207304 | 0.739349 | 0.0261* | |
| H1a | 0.712104 | 0.393489 | 0.828043 | 0.023* | |
| H2a | 0.558255 | 0.368556 | 0.922615 | 0.0261* | |
| H2b | 0.703241 | 0.414569 | 0.92227 | 0.0261* | |
| H3b | 0.749001 | 0.148824 | 0.940459 | 0.0251* | |
| H3a | 0.603436 | 0.104084 | 0.94292 | 0.0251* | |
| H12a | 0.256529 | 0.038941 | 0.849922 | 0.0217* | |
| H17b | 0.24025 | 0.335803 | 0.845829 | 0.0275* | |
| H17a | 0.25235 | 0.34555 | 0.910993 | 0.0275* | |
| H16a | 0.053248 | 0.1875 | 0.853987 | 0.0322* | |
| H21a | 0.032739 | 0.48441 | 0.853379 | 0.0526* | |
| H21c | −0.074614 | 0.400151 | 0.888079 | 0.0526* | |
| H21b | 0.037679 | 0.485998 | 0.91897 | 0.0526* | |
| H15b | −0.032695 | 0.11983 | 0.939646 | 0.0336* | |
| H15a | 0.072245 | 0.210793 | 0.970814 | 0.0336* | |
| H14a | 0.099119 | −0.097775 | 0.910867 | 0.0303* | |
| H14b | 0.10981 | −0.080807 | 0.974889 | 0.0303* | |
| H13a | 0.296357 | 0.071257 | 0.96611 | 0.0225* | |
| H18a | 0.430002 | −0.123046 | 0.937575 | 0.0302* | |
| H20a | 0.33419 | −0.178579 | 1.024112 | 0.0496* | |
| H20c | 0.240371 | −0.300948 | 0.993776 | 0.0496* | |
| H20b | 0.381516 | −0.348697 | 0.996362 | 0.0496* | |
| H19a | 0.34236 | −0.215556 | 0.854721 | 0.0512* | |
| H19c | 0.386534 | −0.371357 | 0.89113 | 0.0512* | |
| H19b | 0.245414 | −0.32338 | 0.88871 | 0.0512* | |
| H1o | 0.556 (2) | 0.499 (3) | 0.7944 (9) | 0.0309* |
| N1 | 0.0178 (7) | 0.0180 (8) | 0.0174 (7) | 0.0028 (6) | −0.0002 (6) | 0.0006 (6) |
| C4 | 0.0200 (9) | 0.0191 (10) | 0.0268 (10) | 0.0010 (7) | −0.0007 (8) | 0.0041 (8) |
| C5 | 0.0218 (10) | 0.0180 (10) | 0.0374 (11) | 0.0050 (7) | −0.0012 (8) | −0.0013 (9) |
| C6 | 0.0215 (10) | 0.0320 (12) | 0.0364 (11) | 0.0038 (9) | 0.0023 (9) | −0.0108 (10) |
| C7 | 0.0169 (9) | 0.0376 (12) | 0.0263 (10) | −0.0026 (8) | 0.0056 (8) | −0.0079 (10) |
| C8 | 0.0239 (9) | 0.0303 (11) | 0.0203 (9) | −0.0050 (9) | 0.0069 (8) | −0.0030 (9) |
| C9 | 0.0211 (9) | 0.0252 (10) | 0.0189 (9) | 0.0016 (8) | 0.0046 (7) | −0.0009 (8) |
| C10 | 0.0148 (8) | 0.0183 (9) | 0.0162 (8) | 0.0005 (7) | 0.0025 (7) | 0.0033 (8) |
| C1 | 0.0180 (8) | 0.0179 (9) | 0.0215 (9) | 0.0000 (7) | 0.0040 (7) | 0.0033 (8) |
| O1 | 0.0307 (7) | 0.0224 (7) | 0.0241 (7) | 0.0078 (6) | 0.0055 (6) | 0.0083 (6) |
| C2 | 0.0214 (9) | 0.0205 (10) | 0.0232 (9) | −0.0018 (8) | 0.0017 (7) | −0.0020 (8) |
| C3 | 0.0173 (9) | 0.0263 (10) | 0.0193 (9) | 0.0007 (8) | −0.0017 (7) | 0.0004 (8) |
| C11 | 0.0193 (8) | 0.0142 (9) | 0.0159 (8) | 0.0040 (7) | 0.0016 (7) | 0.0014 (8) |
| O2 | 0.0197 (6) | 0.0408 (9) | 0.0192 (7) | 0.0014 (6) | −0.0014 (5) | −0.0028 (6) |
| O3 | 0.0139 (6) | 0.0243 (7) | 0.0164 (6) | −0.0016 (5) | 0.0022 (5) | 0.0009 (6) |
| C12 | 0.0132 (8) | 0.0227 (10) | 0.0184 (9) | −0.0017 (7) | 0.0015 (6) | −0.0005 (8) |
| C17 | 0.0226 (9) | 0.0239 (11) | 0.0223 (10) | 0.0032 (8) | 0.0007 (8) | 0.0037 (8) |
| C16 | 0.0189 (9) | 0.0340 (12) | 0.0276 (11) | 0.0040 (9) | −0.0018 (8) | 0.0000 (9) |
| C21 | 0.0283 (11) | 0.0506 (16) | 0.0527 (15) | 0.0167 (11) | 0.0056 (10) | 0.0170 (13) |
| C15 | 0.0183 (9) | 0.0321 (12) | 0.0336 (11) | 0.0022 (9) | 0.0067 (8) | −0.0013 (10) |
| C14 | 0.0189 (9) | 0.0251 (11) | 0.0318 (11) | −0.0023 (8) | 0.0052 (8) | 0.0000 (9) |
| C13 | 0.0177 (8) | 0.0202 (10) | 0.0185 (9) | −0.0009 (7) | 0.0014 (7) | −0.0001 (8) |
| C18 | 0.0202 (9) | 0.0203 (10) | 0.0348 (11) | 0.0020 (8) | 0.0071 (8) | 0.0055 (9) |
| C20 | 0.0396 (13) | 0.0359 (13) | 0.0485 (13) | 0.0092 (11) | 0.0061 (11) | 0.0186 (11) |
| C19 | 0.0566 (16) | 0.0222 (12) | 0.0492 (14) | 0.0067 (11) | 0.0135 (12) | −0.0031 (10) |
| N1—C4 | 1.4605 (11) | C11—O3 | 1.338 (2) |
| N1—C10 | 1.4450 (16) | O3—C12 | 1.4654 (16) |
| N1—C3 | 1.4607 (9) | C12—C17 | 1.5209 (17) |
| C4—C5 | 1.5247 (5) | C12—C13 | 1.5228 (11) |
| C4—H4a | 0.9600 | C12—H12a | 0.9600 |
| C4—H4b | 0.9600 | C17—C16 | 1.5379 (6) |
| C5—C6 | 1.5335 (4) | C17—H17b | 0.9600 |
| C5—H5a | 0.9600 | C17—H17a | 0.9600 |
| C5—H5b | 0.9600 | C16—C21 | 1.5282 (4) |
| C6—C7 | 1.5029 (18) | C16—C15 | 1.5195 (7) |
| C6—H6b | 0.9600 | C16—H16a | 0.9600 |
| C6—H6a | 0.9600 | C21—H21a | 0.9600 |
| C7—C8 | 1.324 (2) | C21—H21c | 0.9600 |
| C7—H7a | 0.9600 | C21—H21b | 0.9600 |
| C8—C9 | 1.5035 (19) | C15—C14 | 1.5196 (5) |
| C8—H8a | 0.9600 | C15—H15b | 0.9600 |
| C9—C10 | 1.5492 (17) | C15—H15a | 0.9600 |
| C9—H9a | 0.9600 | C14—C13 | 1.5379 (16) |
| C9—H9b | 0.9600 | C14—H14a | 0.9600 |
| C10—C1 | 1.5461 (16) | C14—H14b | 0.9600 |
| C10—C11 | 1.546 (2) | C13—C18 | 1.5436 (11) |
| C1—O1 | 1.4169 (17) | C13—H13a | 0.9600 |
| C1—C2 | 1.5294 (18) | C18—C20 | 1.5266 (6) |
| C1—H1a | 0.9600 | C18—C19 | 1.5128 (6) |
| O1—H1o | 0.81 (2) | C18—H18a | 0.9600 |
| C2—C3 | 1.5327 (6) | C20—H20a | 0.9600 |
| C2—H2a | 0.9600 | C20—H20c | 0.9600 |
| C2—H2b | 0.9600 | C20—H20b | 0.9600 |
| C3—H3b | 0.9600 | C19—H19a | 0.9600 |
| C3—H3a | 0.9600 | C19—H19c | 0.9600 |
| C11—O2 | 1.214 (2) | C19—H19b | 0.9600 |
| C4—N1—C10 | 119.33 (6) | C11—O3—C12 | 117.97 (11) |
| C4—N1—C3 | 118.20 (5) | O3—C12—C17 | 108.98 (11) |
| C10—N1—C3 | 111.19 (8) | O3—C12—C13 | 107.64 (10) |
| N1—C4—C5 | 113.76 (3) | O3—C12—H12a | 112.00 |
| N1—C4—H4a | 109.47 | C17—C12—C13 | 112.28 (7) |
| N1—C4—H4b | 109.47 | C17—C12—H12a | 107.00 |
| C5—C4—H4a | 109.47 | C13—C12—H12a | 109.00 |
| C5—C4—H4b | 109.47 | C12—C17—C16 | 109.87 (7) |
| H4a—C4—H4b | 105.00 | C12—C17—H17b | 109.47 |
| C4—C5—C6 | 115.00 (2) | C12—C17—H17a | 109.47 |
| C4—C5—H5a | 109.47 | C16—C17—H17b | 109.47 |
| C4—C5—H5b | 109.47 | C16—C17—H17a | 109.47 |
| C6—C5—H5a | 109.47 | H17b—C17—H17a | 109.00 |
| C6—C5—H5b | 109.47 | C17—C16—C21 | 111.22 (4) |
| H5a—C5—H5b | 103.00 | C17—C16—C15 | 110.02 (4) |
| C5—C6—C7 | 115.30 (4) | C17—C16—H16a | 109.00 |
| C5—C6—H6b | 109.47 | C21—C16—C15 | 111.69 (4) |
| C5—C6—H6a | 109.47 | C21—C16—H16a | 107.00 |
| C7—C6—H6b | 109.47 | C15—C16—H16a | 108.00 |
| C7—C6—H6a | 109.47 | C16—C21—H21a | 109.47 |
| H6b—C6—H6a | 103.00 | C16—C21—H21c | 109.47 |
| C6—C7—C8 | 126.38 (9) | C16—C21—H21b | 109.47 |
| C6—C7—H7a | 117.00 | H21a—C21—H21c | 109.00 |
| C8—C7—H7a | 117.00 | H21a—C21—H21b | 109.00 |
| C7—C8—C9 | 124.00 (10) | H21c—C21—H21b | 109.47 |
| C7—C8—H8a | 118.00 | C16—C15—C14 | 113.14 (3) |
| C9—C8—H8a | 118.00 | C16—C15—H15b | 109.00 |
| C8—C9—C10 | 113.14 (8) | C16—C15—H15a | 109.47 |
| C8—C9—H9a | 109.47 | C14—C15—H15b | 109.47 |
| C8—C9—H9b | 109.47 | C14—C15—H15a | 109.47 |
| C10—C9—H9a | 109.47 | H15b—C15—H15a | 106.00 |
| C10—C9—H9b | 109.47 | C15—C14—C13 | 112.21 (4) |
| H9a—C9—H9b | 105.53 | C15—C14—H14a | 109.47 |
| N1—C10—C9 | 112.01 (8) | C15—C14—H14b | 109.47 |
| N1—C10—C1 | 101.14 (11) | C13—C14—H14a | 109.47 |
| N1—C10—C11 | 114.03 (11) | C13—C14—H14b | 109.47 |
| C9—C10—C1 | 112.99 (10) | H14a—C14—H14b | 107.00 |
| C9—C10—C11 | 107.60 (11) | C12—C13—C14 | 107.36 (9) |
| C1—C10—C11 | 109.07 (10) | C12—C13—C18 | 113.00 (9) |
| C10—C1—O1 | 114.00 (10) | C12—C13—H13a | 110.00 |
| C10—C1—C2 | 104.69 (10) | C14—C13—C18 | 113.97 (6) |
| C10—C1—H1a | 110.00 | C14—C13—H13a | 109.00 |
| O1—C1—C2 | 110.07 (10) | C18—C13—H13a | 103.00 |
| O1—C1—H1a | 105.00 | C13—C18—C20 | 112.05 (5) |
| C2—C1—H1a | 114.00 | C13—C18—C19 | 113.60 (5) |
| C1—O1—H1o | 111.1 (16) | C13—C18—H18a | 105.00 |
| C1—C2—C3 | 105.37 (6) | C20—C18—C19 | 110.95 (2) |
| C1—C2—H2a | 109.47 | C20—C18—H18a | 108.00 |
| C1—C2—H2b | 109.47 | C19—C18—H18a | 106.00 |
| C3—C2—H2a | 109.47 | C18—C20—H20a | 109.47 |
| C3—C2—H2b | 109.47 | C18—C20—H20c | 109.47 |
| H2a—C2—H2b | 113.00 | C18—C20—H20b | 109.47 |
| N1—C3—C2 | 104.74 (6) | H20a—C20—H20c | 109.47 |
| N1—C3—H3b | 109.47 | H20a—C20—H20b | 109.47 |
| N1—C3—H3a | 109.47 | H20c—C20—H20b | 109.47 |
| C2—C3—H3b | 109.47 | C18—C19—H19a | 109.47 |
| C2—C3—H3a | 109.47 | C18—C19—H19c | 109.47 |
| H3b—C3—H3a | 114.00 | C18—C19—H19b | 109.47 |
| C10—C11—O2 | 125.10 (15) | H19a—C19—H19c | 109.47 |
| C10—C11—O3 | 111.82 (14) | H19a—C19—H19b | 109.47 |
| O2—C11—O3 | 123.07 (16) | H19c—C19—H19b | 109.00 |
| H··· | ||||
| O1—H1 | 0.81 (2) | 2.02 (2) | 2.8259 (19) | 174 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.81 (2) | 2.02 (2) | 2.8259 (19) | 174 (2) |
Symmetry code: (i) .