Literature DB >> 22798835

(E)-N'-(4-Chloro-benzyl-idene)-1-benzofuran-2-carbohydrazide monohydrate.

Hoong-Kun Fun, Ching Kheng Quah, Balakrishna Kalluraya, M Babu.   

Abstract

The title compound, C(16)H(11)ClN(2)O(2)·H(2)O, exists in an E conformation with respect to the N=C bond. The benzofuran ring system forms a dihedral angle of 1.26 (4)° with the benzene ring. In the crystal, mol-ecules are linked via (N,C)-H⋯O bifurcated acceptor hydrogen bonds and (O,O,C)-H⋯O trifurcated acceptor hydrogen bonds, forming layers parallel to the bc plane.

Entities:  

Year:  2012        PMID: 22798835      PMCID: PMC3393970          DOI: 10.1107/S1600536812027523

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to hydrazone derivatives, see: Sridhar & Perumal (2003 ▶); Vijayakumar et al. (2011 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For related structures, see: Fun, Quah & Abdel-Aziz (2012 ▶); Fun, Quah, Nitinchandra et al. (2012 ▶); Fun, Quah, Shyma et al. (2012 ▶).

Experimental

Crystal data

C16H11ClN2O2·H2O M = 316.73 Monoclinic, a = 24.6121 (15) Å b = 4.6625 (3) Å c = 12.6570 (8) Å β = 99.294 (1)° V = 1433.37 (16) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 100 K 0.57 × 0.34 × 0.09 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.856, T max = 0.975 7338 measured reflections 4620 independent reflections 4511 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.073 S = 1.04 4620 reflections 211 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 2025 Friedel pairs Flack parameter: 0.03 (3) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812027523/is5157sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812027523/is5157Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812027523/is5157Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11ClN2O2·H2OF(000) = 656
Mr = 316.73Dx = 1.468 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 5261 reflections
a = 24.6121 (15) Åθ = 3.3–32.6°
b = 4.6625 (3) ŵ = 0.28 mm1
c = 12.6570 (8) ÅT = 100 K
β = 99.294 (1)°Plate, yellow
V = 1433.37 (16) Å30.57 × 0.34 × 0.09 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer4620 independent reflections
Radiation source: fine-focus sealed tube4511 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
φ and ω scansθmax = 32.6°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −35→36
Tmin = 0.856, Tmax = 0.975k = −6→7
7338 measured reflectionsl = −19→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.073w = 1/[σ2(Fo2) + (0.0441P)2 + 0.2352P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.002
4620 reflectionsΔρmax = 0.34 e Å3
211 parametersΔρmin = −0.19 e Å3
2 restraintsAbsolute structure: Flack (1983), 2025 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (3)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.362378 (12)2.08150 (5)0.62418 (2)0.02405 (7)
O10.66851 (3)0.45040 (16)0.85030 (6)0.01364 (14)
O20.61809 (3)0.76090 (16)0.59506 (6)0.01549 (14)
N10.59805 (4)0.87204 (18)0.76135 (7)0.01207 (15)
N20.56127 (4)1.07881 (18)0.71696 (7)0.01267 (15)
C10.70999 (4)0.2512 (2)0.87293 (8)0.01263 (16)
C20.72801 (5)0.1294 (2)0.97208 (8)0.01605 (18)
H2A0.71190.17581.03320.019*
C30.77114 (5)−0.0650 (2)0.97685 (9)0.0174 (2)
H3A0.7851−0.15371.04330.021*
C40.79475 (5)−0.1341 (2)0.88576 (9)0.01846 (19)
H4A0.8245−0.26630.89220.022*
C50.77532 (5)−0.0121 (2)0.78699 (9)0.01828 (19)
H5A0.7911−0.06070.72560.022*
C60.73181 (4)0.1849 (2)0.77992 (8)0.01348 (17)
C70.70075 (4)0.3521 (2)0.69570 (8)0.01474 (17)
H7A0.70490.35420.62240.018*
C80.66431 (4)0.5062 (2)0.74233 (8)0.01243 (16)
C90.62453 (4)0.7225 (2)0.69371 (8)0.01223 (17)
C100.53404 (4)1.2045 (2)0.78210 (8)0.01311 (17)
H10A0.54031.15510.85590.016*
C110.49318 (4)1.4248 (2)0.74216 (8)0.01304 (17)
C120.46196 (5)1.5490 (2)0.81314 (9)0.01721 (19)
H12A0.46861.49500.88650.021*
C130.42134 (5)1.7509 (2)0.77787 (10)0.0192 (2)
H13A0.39981.83210.82610.023*
C140.41298 (4)1.8308 (2)0.67104 (10)0.01754 (19)
C150.44432 (5)1.7160 (2)0.59957 (9)0.0181 (2)
H15A0.43861.77710.52700.022*
C160.48413 (4)1.5106 (2)0.63496 (8)0.01574 (18)
H16A0.50521.42840.58610.019*
O1W0.58492 (4)0.25083 (19)0.47297 (6)0.01780 (15)
H1W10.5989 (8)0.402 (4)0.5046 (15)0.026 (5)*
H2W10.5934 (10)0.127 (5)0.510 (2)0.044 (6)*
H1N10.6041 (8)0.820 (4)0.8315 (15)0.021 (4)*
U11U22U33U12U13U23
Cl10.01451 (11)0.01539 (10)0.03983 (16)0.00472 (8)−0.00296 (10)−0.00640 (11)
O10.0150 (3)0.0136 (3)0.0126 (3)0.0039 (2)0.0033 (3)0.0011 (2)
O20.0206 (4)0.0144 (3)0.0122 (3)0.0019 (3)0.0046 (3)0.0009 (3)
N10.0125 (4)0.0121 (3)0.0117 (3)0.0020 (3)0.0019 (3)0.0011 (3)
N20.0120 (4)0.0116 (3)0.0144 (4)0.0009 (3)0.0018 (3)0.0008 (3)
C10.0126 (4)0.0109 (4)0.0144 (4)0.0010 (3)0.0024 (3)−0.0005 (3)
C20.0175 (5)0.0169 (4)0.0137 (4)0.0026 (4)0.0024 (4)0.0009 (3)
C30.0179 (5)0.0170 (4)0.0164 (5)0.0023 (3)0.0004 (4)0.0019 (3)
C40.0165 (5)0.0183 (4)0.0207 (5)0.0060 (4)0.0034 (4)0.0012 (4)
C50.0186 (5)0.0187 (4)0.0185 (5)0.0062 (4)0.0060 (4)−0.0003 (4)
C60.0140 (4)0.0130 (4)0.0140 (4)0.0017 (3)0.0040 (3)0.0003 (3)
C70.0165 (4)0.0147 (4)0.0135 (4)0.0023 (3)0.0038 (3)0.0009 (3)
C80.0134 (4)0.0120 (4)0.0121 (4)0.0012 (3)0.0026 (3)0.0009 (3)
C90.0134 (4)0.0106 (4)0.0131 (4)−0.0003 (3)0.0034 (3)0.0003 (3)
C100.0140 (4)0.0127 (4)0.0129 (4)0.0007 (3)0.0029 (3)0.0007 (3)
C110.0124 (4)0.0122 (4)0.0150 (4)0.0002 (3)0.0039 (3)−0.0022 (3)
C120.0193 (5)0.0159 (4)0.0180 (4)0.0011 (4)0.0077 (4)−0.0020 (4)
C130.0169 (5)0.0166 (4)0.0257 (5)0.0017 (4)0.0080 (4)−0.0050 (4)
C140.0116 (4)0.0119 (4)0.0284 (5)0.0014 (3)0.0009 (4)−0.0040 (4)
C150.0175 (5)0.0170 (4)0.0187 (5)0.0039 (3)0.0000 (4)−0.0012 (4)
C160.0153 (4)0.0166 (4)0.0155 (4)0.0044 (3)0.0028 (3)−0.0007 (3)
O1W0.0256 (4)0.0159 (3)0.0116 (3)−0.0015 (3)0.0022 (3)0.0006 (3)
Cl1—C141.7407 (11)C6—C71.4371 (14)
O1—C11.3757 (12)C7—C81.3566 (14)
O1—C81.3785 (12)C7—H7A0.9500
O2—C91.2459 (12)C8—C91.4696 (13)
N1—C91.3505 (12)C10—C111.4690 (14)
N1—N21.3785 (12)C10—H10A0.9500
N1—H1N10.909 (18)C11—C161.3975 (14)
N2—C101.2848 (13)C11—C121.3984 (14)
C1—C21.3837 (14)C12—C131.3931 (16)
C1—C61.4049 (13)C12—H12A0.9500
C2—C31.3896 (15)C13—C141.3856 (18)
C2—H2A0.9500C13—H13A0.9500
C3—C41.4097 (16)C14—C151.3876 (16)
C3—H3A0.9500C15—C161.3916 (15)
C4—C51.3863 (16)C15—H15A0.9500
C4—H4A0.9500C16—H16A0.9500
C5—C61.4025 (14)O1W—H1W10.857 (19)
C5—H5A0.9500O1W—H2W10.75 (3)
C1—O1—C8105.55 (8)C7—C8—C9128.60 (9)
C9—N1—N2117.07 (8)O1—C8—C9118.87 (8)
C9—N1—H1N1117.6 (12)O2—C9—N1124.39 (9)
N2—N1—H1N1125.2 (12)O2—C9—C8119.11 (9)
C10—N2—N1115.70 (9)N1—C9—C8116.48 (8)
O1—C1—C2125.76 (9)N2—C10—C11119.81 (9)
O1—C1—C6110.21 (8)N2—C10—H10A120.1
C2—C1—C6124.03 (9)C11—C10—H10A120.1
C1—C2—C3115.97 (10)C16—C11—C12119.16 (10)
C1—C2—H2A122.0C16—C11—C10121.81 (9)
C3—C2—H2A122.0C12—C11—C10119.02 (9)
C2—C3—C4121.76 (10)C13—C12—C11120.95 (10)
C2—C3—H3A119.1C13—C12—H12A119.5
C4—C3—H3A119.1C11—C12—H12A119.5
C5—C4—C3121.07 (10)C14—C13—C12118.71 (10)
C5—C4—H4A119.5C14—C13—H13A120.6
C3—C4—H4A119.5C12—C13—H13A120.6
C4—C5—C6118.35 (10)C13—C14—C15121.45 (10)
C4—C5—H5A120.8C13—C14—Cl1119.90 (8)
C6—C5—H5A120.8C15—C14—Cl1118.65 (9)
C5—C6—C1118.81 (9)C14—C15—C16119.50 (10)
C5—C6—C7135.37 (10)C14—C15—H15A120.2
C1—C6—C7105.81 (9)C16—C15—H15A120.2
C8—C7—C6105.94 (9)C15—C16—C11120.20 (10)
C8—C7—H7A127.0C15—C16—H16A119.9
C6—C7—H7A127.0C11—C16—H16A119.9
C7—C8—O1112.48 (9)H1W1—O1W—H2W1107 (2)
C9—N1—N2—C10175.60 (9)N2—N1—C9—O20.48 (14)
C8—O1—C1—C2−179.09 (10)N2—N1—C9—C8179.00 (8)
C8—O1—C1—C60.46 (11)C7—C8—C9—O27.15 (16)
O1—C1—C2—C3−179.16 (10)O1—C8—C9—O2−175.52 (9)
C6—C1—C2—C31.35 (16)C7—C8—C9—N1−171.45 (10)
C1—C2—C3—C4−0.30 (16)O1—C8—C9—N15.88 (13)
C2—C3—C4—C5−0.69 (18)N1—N2—C10—C11−179.00 (8)
C3—C4—C5—C60.67 (17)N2—C10—C11—C16−2.28 (15)
C4—C5—C6—C10.32 (16)N2—C10—C11—C12176.82 (10)
C4—C5—C6—C7−179.70 (12)C16—C11—C12—C131.54 (16)
O1—C1—C6—C5179.05 (9)C10—C11—C12—C13−177.59 (10)
C2—C1—C6—C5−1.38 (16)C11—C12—C13—C14−1.15 (16)
O1—C1—C6—C7−0.94 (11)C12—C13—C14—C15−0.46 (17)
C2—C1—C6—C7178.62 (10)C12—C13—C14—Cl1179.76 (8)
C5—C6—C7—C8−178.95 (12)C13—C14—C15—C161.64 (17)
C1—C6—C7—C81.04 (11)Cl1—C14—C15—C16−178.57 (9)
C6—C7—C8—O1−0.81 (12)C14—C15—C16—C11−1.23 (16)
C6—C7—C8—C9176.66 (10)C12—C11—C16—C15−0.34 (16)
C1—O1—C8—C70.24 (11)C10—C11—C16—C15178.77 (10)
C1—O1—C8—C9−177.51 (9)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O20.855 (19)2.040 (19)2.8815 (11)168.1 (18)
O1W—H2W1···O2i0.75 (2)2.06 (2)2.8045 (11)173 (2)
N1—H1N1···O1Wii0.909 (19)1.952 (19)2.8083 (12)156.2 (18)
C2—H2A···O2ii0.952.573.3710 (14)142
C10—H10A···O1Wii0.952.543.3067 (13)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1W1⋯O20.855 (19)2.040 (19)2.8815 (11)168.1 (18)
O1W—H2W1⋯O2i 0.75 (2)2.06 (2)2.8045 (11)173 (2)
N1—H1N1⋯O1W ii 0.909 (19)1.952 (19)2.8083 (12)156.2 (18)
C2—H2A⋯O2ii 0.952.573.3710 (14)142
C10—H10A⋯O1W ii 0.952.543.3067 (13)138

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-(5-Bromo-1-benzofuran-2-yl)ethanone.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Hatem A Abdel-Aziz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-12

3.  N'-[(E)-3-Chloro-2-fluoro-benzyl-idene]-6-methyl-nicotinohydrazide monohydrate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; P C Shyma; Balakrishna Kalluraya; J H S Vidyashree
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

4.  N'-[(E)-4-Bromo-benzyl-idene]-1-benzofuran-2-carbohydrazide monohydrate.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Balakrishna Kalluraya; M Babu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.